Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Reverse (-)

36419943 .. 36421838

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G421800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTGAGATCTCTACGACAGGGCTTGAACCTTGCTCGAGCTCAAATGCTATCGCGGCCAAGATGGCTCTCTTCACAATCAGAGGCGTTGGTGGAGACCAGAACCAATGACATCGGCATCATCTCTGGAATCCCTGAAGAACATCTACGACGAAGGGTTATAATCTATTCACCTGCTCGAACTGCAACCCAACAAGGTTCTGGGAAAGTCGGGAAATGGAAAATTAATTTTCTTTCTACACAAAAGTGGGAAAACCCATTGATGGGTTGGACTTCCACAGGTGATCCCTATGCCAATGTTGGTGAGGCAGGACTGACTTTTGAAAGTGAAGAAGCTGCAAAGGACTTCGCTGAGAGACATGGTTGGGACTATACGGTCAAGAAGCGCCACACACCACTTTTAAAGGTTAAGTCATATGCAGACAACTTCAAGTGGAAGGGCCCTGCAAAGAGTGAAAAGAGTGCAGCGGATGCTGCGCGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

162

Amino Acids

18.13

Weight (kDa)

9.94

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AarI	CACCTGC	1 cut(s)	181
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	181
AccII	CGCG	2 cut(s)	55, 478
AciI	CCGC	2 cut(s)	55, 467
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	262, 263
AgsI	TTSAA	3 cut(s)	28, 323, 430
AleI	CACNNNNGTG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	41, 335
AluI	AGCT	2 cut(s)	41, 335
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	2 cut(s)	89, 349
AlwI	GGATC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	56, 439
ApaI	GGGCCC	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	335, 464, 473
AseI	ATTAAT	1 cut(s)	225
AspLEI	GCGC	3 cut(s)	387, 478, 480
AspS9I	GGNCC	2 cut(s)	439, 440
AsuHPI	GGTGA	4 cut(s)	16, 162, 293, 314
AvaI	CYCGRG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	443
BanII	GRGCYC	2 cut(s)	43, 443
BarI	GAAGNNNNNNTAC	2 cut(s)	129, 161
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	322, 460, 476
BccI	CCATC	2 cut(s)	57, 256
BcoDI	GTCTC	2 cut(s)	89, 349
BfoI	RGCGCY	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	64
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	4 cut(s)	56, 336, 465, 474
BlsI	GCNGC	4 cut(s)	57, 337, 466, 475
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	439, 440
BmiI	GGNNCC	1 cut(s)	441
BmsI	GCATC	2 cut(s)	126, 460
BsaI	GGTCTC	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 263
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	262, 263
BseMII	CTCAG	1 cut(s)	342
BsePI	GCGCGC	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	322, 460, 476
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	55, 478
BshFI	GGCC	2 cut(s)	58, 441
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	262, 263
BsmAI	GTCTC	2 cut(s)	89, 349
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	58, 441
Bso31I	GGTCTC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	36
Bsp120I	GGGCCC	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	43, 443
Bsp143I	GATC	2 cut(s)	8, 283
BspACI	CCGC	2 cut(s)	55, 467
BspANI	GGCC	2 cut(s)	58, 441
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	2 cut(s)	55, 478
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	89
BssHII	GCGCGC	1 cut(s)	476
BssMI	GATC	2 cut(s)	8, 283
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	2 cut(s)	55, 478
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	3 cut(s)	387, 478, 480
BstKTI	GATC	2 cut(s)	11, 286
BstMAI	GTCTC	2 cut(s)	89, 349
BstMBI	GATC	2 cut(s)	8, 283
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 64, 182, 470, 473
BstSLI	GKGCMC	1 cut(s)	443
BstUI	CGCG	2 cut(s)	55, 478
BstV1I	GCAGC	3 cut(s)	322, 460, 476
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	58, 441
BtsCI	GGATG	1 cut(s)	475
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	478
CfoI	GCGC	3 cut(s)	387, 478, 480
Cfr13I	GGNCC	2 cut(s)	439, 440
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	6 cut(s)	24, 41, 58, 67, 335, 441
CviKI_1	RGCY	6 cut(s)	24, 41, 58, 67, 335, 441
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	10, 285
DpnII	GATC	2 cut(s)	8, 283
DraI	TTTAAA	1 cut(s)	402
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	41
Eco24I	GRGCYC	2 cut(s)	43, 443
Eco31I	GGTCTC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	41
EcoO109I	RGGNCCY	2 cut(s)	439, 440
EcoT38I	GRGCYC	2 cut(s)	43, 443
FaeI	CATG	1 cut(s)	362
FaiI	YATR	8 cut(s)	161, 291, 360, 372, 415, 417, 482, 484
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	1 cut(s)	358
FauNDI	CATATG	2 cut(s)	415, 482
Fnu4HI	GCNGC	4 cut(s)	56, 336, 465, 474
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	2 cut(s)	43, 443
Fsp4HI	GCNGC	4 cut(s)	56, 336, 465, 474
GlaI	GCGC	3 cut(s)	386, 477, 479
GluI	GCNGC	4 cut(s)	56, 336, 465, 474
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	58, 441
HhaI	GCGC	3 cut(s)	387, 478, 480
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	3 cut(s)	385, 476, 478
HinP1I	GCGC	3 cut(s)	385, 476, 478
HinfI	GANTC	1 cut(s)	129
HphI	GGTGA	4 cut(s)	16, 162, 293, 314
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	3 cut(s)	126, 211, 379
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	2 cut(s)	147, 430
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	5 cut(s)	185, 338, 419, 446, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 64, 182, 470, 473
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	3 cut(s)	385, 476, 478
Kzo9I	GATC	2 cut(s)	8, 283
LpnPI	CCDG	9 cut(s)	5, 111, 112, 147, 186, 186, 264, 294, 456
Lsp1109I	GCAGC	3 cut(s)	322, 460, 476
LweI	GCATC	2 cut(s)	126, 460
MalI	GATC	2 cut(s)	10, 285
MboI	GATC	2 cut(s)	8, 283
MboII	GAAGA	3 cut(s)	63, 149, 341
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	43, 443
MluCI	AATT	2 cut(s)	222, 226
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	2 cut(s)	76, 298
MseI	TTAA	3 cut(s)	225, 401, 408
MslI	CAYNNNNRTG	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	467
MvnI	CGCG	2 cut(s)	55, 478
MwoI	GCNNNNNNNGC	5 cut(s)	55, 64, 182, 470, 473
NdeI	CATATG	2 cut(s)	415, 482
NdeII	GATC	2 cut(s)	8, 283
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	441
OliI	CACNNNNGTG	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	181
PauI	GCGCGC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	57, 337, 466, 475
PshBI	ATTAAT	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	441
PspOMI	GGGCCC	1 cut(s)	439
PspPI	GGNCC	2 cut(s)	439, 440
PspXI	VCTCGAGB	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	8
PteI	GCGCGC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	225, 401, 408
SatI	GCNGC	4 cut(s)	56, 336, 465, 474
Sau3AI	GATC	2 cut(s)	8, 283
Sau96I	GGNCC	2 cut(s)	439, 440
SduI	GDGCHC	2 cut(s)	43, 443
SetI	ASST	7 cut(s)	33, 43, 175, 199, 283, 337, 408
SfaNI	GCATC	2 cut(s)	126, 460
Sfr274I	CTCGAG	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	2 cut(s)	222, 226
SsiI	CCGC	2 cut(s)	55, 467
SstI	GAGCTC	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	37, 178
TasI	AATT	2 cut(s)	222, 226
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	3 cut(s)	225, 401, 408
Tru9I	TTAA	3 cut(s)	225, 401, 408
TseI	GCWGC	3 cut(s)	335, 464, 473
VspI	ATTAAT	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	2 cut(s)	197, 264
XhoI	CTCGAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.