Rw6G042490

NADH dehydrogenase ubiquinone iron-sulfur protein 4, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002607
Physical Location & Seq
Forward (+)
65924237 .. 65926329
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042490.1

Sequence Viewer

Length: 465 bp
ATGGCAAGCTCTCTGCGACATGGATTCACCAAAGCCCGATCACCTATTCTCTCCCGGACCAGATGGTTGTCGTCGGAATCTCAGGCCCTGGTGGAGACCAGGATCCCCGACGTCGGAATCATATCTGGAATCCCCGAACAGCATCTCAAAAGAAGGGTCGTAATTTATTCTCCTGCTCGAACAGCATCACAGCAAGGTTCTGGGAAAGTTGGGAAATGGAAAATTAATTTCCTTTCTACGCAGAAGTGGGAAAATCCATTGATGGGTTGGACATCTACAGGTGATCCCTATGCCAATGTGGGTGAGGCAGCACTGACTTTCGAAAGTGAAGAAGCTGCAAGGGAATTTGCTGAGAAACATGGTTGGGATTATACGGTCAGGAAGCGTCACACACCACTTCTAAGGGCCAAGACTTATGCAGACAACTTCAAGTGGAAGGGGCTACCGAAGAGCGACGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
ETC_C1_NDUFA4

Protein Analysis

154

Amino Acids

17.45

Weight (kDa)

9.77

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDUS4 PF04800 52 - 146 2.6e-31 NADH dehydrogenase ubiquinone Fe-S protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
AclWI GGATC 3 cut(s) 97, 110, 278
AcsI RAATTY 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 113, 263
AgsI TTSAA 1 cut(s) 430
AjnI CCWGG 2 cut(s) 87, 98
AluBI AGCT 2 cut(s) 9, 335
AluI AGCT 2 cut(s) 9, 335
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 3 cut(s) 97, 110, 278
AlwNI CAGNNNCTG 1 cut(s) 88
AoxI GGCC 2 cut(s) 84, 405
ApeKI GCWGC 2 cut(s) 308, 335
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AseI ATTAAT 1 cut(s) 225
AspS9I GGNCC 3 cut(s) 57, 85, 405
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 4 cut(s) 19, 33, 293, 314
AsuII TTCGAA 1 cut(s) 321
AvaII GGWCC 1 cut(s) 57
BamHI GGATCC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 320, 322
BccI CCATC 2 cut(s) 57, 256
BciT130I CCWGG 2 cut(s) 89, 100
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 2 cut(s) 309, 336
BlsI GCNGC 2 cut(s) 310, 337
Bme1390I CCNGG 3 cut(s) 55, 89, 100
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 3 cut(s) 57, 85, 405
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 3 cut(s) 55, 89, 100
BmsI GCATC 2 cut(s) 151, 194
Bpu14I TTCGAA 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 263
BseBI CCWGG 2 cut(s) 89, 100
BseDI CCNNGG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 113, 263
BseMII CTCAG 2 cut(s) 95, 342
BseXI GCAGC 2 cut(s) 320, 322
BshFI GGCC 2 cut(s) 86, 407
BsiSI CCGG 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 113, 263
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 2 cut(s) 86, 407
Bso31I GGTCTC 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 38, 102, 283
BspANI GGCC 2 cut(s) 86, 407
BspCNI CTCAG 2 cut(s) 94, 343
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 3 cut(s) 97, 110, 278
BspQI GCTCTTC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 38, 102, 283
BssNI GRCGYC 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 89, 100
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 443
BstACI GRCGYC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 81, 351, 401
BstKTI GATC 3 cut(s) 41, 105, 286
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 38, 102, 283
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 89, 100
BstSCI CCNGG 3 cut(s) 53, 87, 98
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 320, 322
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 2 cut(s) 86, 407
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 88
Cfr13I GGNCC 3 cut(s) 57, 85, 405
CseI GACGC 1 cut(s) 374
CviAII CATG 2 cut(s) 20, 359
CviJI RGCY 6 cut(s) 9, 35, 86, 335, 407, 442
CviKI_1 RGCY 6 cut(s) 9, 35, 86, 335, 407, 442
DdeI CTNAG 3 cut(s) 81, 351, 401
DpnI GATC 3 cut(s) 40, 104, 285
DpnII GATC 3 cut(s) 38, 102, 283
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 87, 98
FaeI CATG 2 cut(s) 23, 362
FaiI YATR 6 cut(s) 21, 122, 291, 360, 372, 417
FatI CATG 2 cut(s) 19, 358
Fnu4HI GCNGC 2 cut(s) 309, 336
Fsp4HI GCNGC 2 cut(s) 309, 336
GluI GCNGC 2 cut(s) 309, 336
HaeIII GGCC 2 cut(s) 86, 407
HapII CCGG 1 cut(s) 55
HgaI GACGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 2 cut(s) 23, 362
HinfI GANTC 4 cut(s) 24, 77, 117, 129
HpaII CCGG 1 cut(s) 55
HphI GGTGA 4 cut(s) 19, 33, 293, 314
Hpy188I TCNGA 2 cut(s) 76, 116
Hpy188III TCNNGA 2 cut(s) 126, 379
Hpy99I CGWCG 4 cut(s) 76, 113, 116, 458
HpyAV CCTTC 2 cut(s) 147, 430
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 338, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 81, 351, 401
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 2 cut(s) 23, 362
Kzo9I GATC 3 cut(s) 38, 102, 283
LguI GCTCTTC 1 cut(s) 443
Lsp1109I GCAGC 2 cut(s) 320, 322
LweI GCATC 2 cut(s) 151, 194
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 40, 104, 285
MboI GATC 3 cut(s) 38, 102, 283
MboII GAAGA 2 cut(s) 341, 460
MflI RGATCY 1 cut(s) 102
MluCI AATT 4 cut(s) 162, 222, 226, 344
MmeI TCCRAC 3 cut(s) 54, 94, 248
MnlI CCTC 2 cut(s) 298, 451
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 3 cut(s) 55, 89, 100
MvaI CCWGG 2 cut(s) 89, 100
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 55
NdeII GATC 3 cut(s) 38, 102, 283
NlaIII CATG 2 cut(s) 23, 362
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 386
NspV TTCGAA 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 443
PfeI GAWTC 4 cut(s) 24, 77, 117, 129
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 2 cut(s) 310, 337
PshBI ATTAAT 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 87, 98
PspGI CCWGG 2 cut(s) 87, 98
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 3 cut(s) 57, 85, 405
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 309, 336
Sau3AI GATC 3 cut(s) 38, 102, 283
Sau96I GGNCC 3 cut(s) 57, 85, 405
ScrFI CCNGG 3 cut(s) 55, 89, 100
SetI ASST 6 cut(s) 11, 46, 114, 199, 283, 337
SfaNI GCATC 2 cut(s) 151, 194
SfcI CTRYAG 1 cut(s) 276
SfuI TTCGAA 1 cut(s) 321
SinI GGWCC 1 cut(s) 57
Sse9I AATT 4 cut(s) 162, 222, 226, 344
StyD4I CCNGG 3 cut(s) 53, 87, 98
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 178, 321
TasI AATT 4 cut(s) 162, 222, 226, 344
TfiI GAWTC 4 cut(s) 24, 77, 117, 129
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 308, 335
Tsp45I GTSAC 1 cut(s) 386
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 57
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.