Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Forward (+)

17020357 .. 17023744

Gene Structure 3388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1187000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGAGCTCTCTGCAGCGCATATCAAGCCACGCTCGTCTTCTCCGAGCCTCTGTTGCCTCAGGATCCAGTCCGTTCTCGACGGACGCTCTAGTCGAGTACATGCCCGGTGAGATCGGAAAGGTCGCCGGCATTCCCGACGAACATCTTCGCCGGAGGGTTATAATATACTCACCTGCAAGAACTGCATCTCAGCAAGGATCGGGGAAAGTTGGGAAGTGGAAAATCAACTTTGTGTCAACACAAAAGTGGGAGAATCCATTGATGGGATGGACTTCCACTGGGGACCCATATGCACACGTTGGTGATTCGACACTGGGTTTTGACAGTGAAGATGCTGCAAAGTCCTTTGCAGAGAGACATGGTTGGGATTATGTGGTTAAAAGGCGGCAAACGCCATTGTTGAGGGTGAAGGCATATGCAGATAACTTCAAGTTTAAAGGCCTCCCCAAAACTGAGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

156

Amino Acids

17.19

Weight (kDa)

9.65

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUS4	PF04800	54 - 147	1.4e-29	NADH dehydrogenase ubiquinone Fe-S protein 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AarI	CACCTGC	1 cut(s)	184
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	184
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	3 cut(s)	60, 73, 208
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	433
AleI	CACNNNNGTG	2 cut(s)	247, 303
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	3 cut(s)	60, 73, 208
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	2 cut(s)	16, 338
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	4 cut(s)	122, 165, 317, 421
AvaII	GGWCC	1 cut(s)	286
AxyI	CCTNAGG	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	28, 325
BccI	CCATC	2 cut(s)	259, 264
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	17, 339, 389
BlsI	GCNGC	3 cut(s)	18, 340, 390
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	3 cut(s)	67, 287, 288
BmrFI	CCNGG	1 cut(s)	108
BmrI	ACTGGG	2 cut(s)	291, 326
BmsI	GCATC	2 cut(s)	197, 325
BmuI	ACTGGG	2 cut(s)	291, 326
BpiI	GAAGAC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	3 cut(s)	69, 286, 321
Bse21I	CCTNAGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	3 cut(s)	75, 206, 447
BseNI	ACTGG	3 cut(s)	69, 286, 321
BseXI	GCAGC	2 cut(s)	28, 325
BshFI	GGCC	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	3 cut(s)	108, 129, 154
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	65, 114, 200
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	3 cut(s)	74, 205, 448
BspLI	GGNNCC	3 cut(s)	67, 287, 288
BspMAI	CTGCAG	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	3 cut(s)	60, 73, 208
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	69, 286, 321
BssAI	RCCGGY	1 cut(s)	128
BssMI	GATC	3 cut(s)	65, 114, 200
Bst4CI	ACNGT	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	7, 130
BstDEI	CTNAG	3 cut(s)	61, 192, 456
BstF5I	GGATG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	3 cut(s)	68, 117, 203
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	3 cut(s)	65, 114, 200
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 56, 185, 394
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	28, 325
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
Bsu36I	CCTNAGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	3 cut(s)	279, 314, 334
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	7, 130
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	2 cut(s)	103, 362
CviJI	RGCY	4 cut(s)	9, 30, 50, 444
CviKI_1	RGCY	4 cut(s)	9, 30, 50, 444
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	3 cut(s)	61, 192, 456
DpnI	GATC	3 cut(s)	67, 116, 202
DpnII	GATC	3 cut(s)	65, 114, 200
DraI	TTTAAA	1 cut(s)	439
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	9
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	2 cut(s)	106, 365
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	102, 361
FauNDI	CATATG	2 cut(s)	292, 418
Fnu4HI	GCNGC	3 cut(s)	17, 339, 389
FokI	GGATG	1 cut(s)	282
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	3 cut(s)	17, 339, 389
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	3 cut(s)	17, 339, 389
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	3 cut(s)	108, 129, 154
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	106, 365
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	256, 308
HpaII	CCGG	3 cut(s)	108, 129, 154
HphI	GGTGA	4 cut(s)	122, 165, 317, 421
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	47, 119
Hpy188III	TCNNGA	3 cut(s)	63, 79, 137
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	2 cut(s)	85, 143
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	7 cut(s)	16, 179, 188, 296, 341, 353, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 56, 185, 394
HpyF3I	CTNAG	3 cut(s)	61, 192, 456
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	106, 365
HspAI	GCGC	1 cut(s)	19
KflI	GGGWCCC	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	65, 114, 200
LpnPI	CCDG	8 cut(s)	48, 82, 121, 142, 167, 189, 267, 302
Lsp1109I	GCAGC	2 cut(s)	28, 325
LweI	GCATC	2 cut(s)	197, 325
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	300
MalI	GATC	3 cut(s)	67, 116, 202
MboI	GATC	3 cut(s)	65, 114, 200
MboII	GAAGA	3 cut(s)	32, 140, 344
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	463
MnlI	CCTC	6 cut(s)	61, 70, 150, 399, 451, 455
MroNI	GCCGGC	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	2 cut(s)	381, 438
MslI	CAYNNNNRTG	2 cut(s)	247, 303
MspI	CCGG	3 cut(s)	108, 129, 154
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	27, 56, 185, 394
NaeI	GCCGGC	1 cut(s)	130
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	2 cut(s)	292, 418
NdeII	GATC	3 cut(s)	65, 114, 200
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	106, 365
NlaIV	GGNNCC	3 cut(s)	67, 287, 288
NspI	RCATGY	1 cut(s)	106
OliI	CACNNNNGTG	2 cut(s)	247, 303
PaqCI	CACCTGC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	2 cut(s)	43, 93
PctI	GAATGC	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	256, 308
PkrI	GCNGC	3 cut(s)	18, 340, 390
PpuMI	RGGWCCY	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	67, 287, 288
PspPI	GGNCC	1 cut(s)	286
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	2 cut(s)	247, 303
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	381, 438
SatI	GCNGC	3 cut(s)	17, 339, 389
Sau3AI	GATC	3 cut(s)	65, 114, 200
Sau96I	GGNCC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	4 cut(s)	11, 126, 178, 303
SfaNI	GCATC	2 cut(s)	197, 325
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	2 cut(s)	247, 303
Sse9I	AATT	1 cut(s)	463
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	1 cut(s)	388
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	3 cut(s)	80, 96, 311
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	256, 308
Tru1I	TTAA	2 cut(s)	381, 438
Tru9I	TTAA	2 cut(s)	381, 438
TscAI	CASTG	3 cut(s)	286, 321, 334
TseI	GCWGC	2 cut(s)	16, 338
TspGWI	ACGGA	2 cut(s)	63, 98
TspRI	CASTG	3 cut(s)	286, 321, 334
VpaK11BI	GGWCC	1 cut(s)	286
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.