Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Forward (+)

19485536 .. 19487574

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCGAGCTCCCTGCAACGCATCTCGAGCCACGCTCGTCTTCTCCGGACCGCTATCGCTTCTGGGTCCAGACCATTCTCGGCGGACGCTTTGGTCGAGTACCGGCCCGGCGAGATCGGAAGAGTCTCCGGCATCCCCGATGAACATCTCCGCAGAAAGGTTGTGATATACTCACCTGCAAGAACTGCGAGTCAACAAGGATCAGGGAAAGTTGGCAAGTGGAAGATTAACTTTGTGTCCACACAGAATTCCTCTCTTGCATTTCGATCAAAATATTTCAAGCGGCACACGCCATTGTTGAAGGTGAAGTTATATGCTGACAACTTCAAGTGGAAGGGCCTCCCTAAAACTGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

10.87

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	184
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	4 cut(s)	51, 83, 151, 283
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	280, 301, 328
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	2 cut(s)	104, 337
ApoI	RAATTY	1 cut(s)	247
AspS9I	GGNCC	4 cut(s)	48, 66, 105, 337
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	165, 316
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	48, 66
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	11
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	2 cut(s)	48, 66
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	4 cut(s)	48, 66, 105, 337
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	30, 141
BpiI	GAAGAC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuMI	CCSGG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	144
BseAI	TCCGGA	1 cut(s)	45
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	106, 339
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	4 cut(s)	46, 103, 108, 129
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	106, 339
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	114, 200, 266
BspACI	CCGC	4 cut(s)	51, 83, 151, 283
BspANI	GGCC	2 cut(s)	106, 339
BspCNI	CTCAG	1 cut(s)	343
BspEI	TCCGGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	102
BssMI	GATC	3 cut(s)	114, 200, 266
Bst6I	CTCTTC	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	3 cut(s)	117, 203, 269
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	3 cut(s)	114, 200, 266
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 185, 289
BstSCI	CCNGG	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	106, 339
BtsCI	GGATG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	4 cut(s)	48, 66, 105, 337
CpoI	CGGWCCG	1 cut(s)	48
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	100
CspI	CGGWCCG	1 cut(s)	48
CviAII	CATG	1 cut(s)	357
CviJI	RGCY	4 cut(s)	9, 30, 106, 339
CviKI_1	RGCY	4 cut(s)	9, 30, 106, 339
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	116, 202, 268
DpnII	GATC	3 cut(s)	114, 200, 266
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	48, 66
Eco53kI	GAGCTC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	1 cut(s)	360
FaiI	YATR	4 cut(s)	169, 313, 315, 358
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	1 cut(s)	356
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	284
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	106, 339
HapII	CCGG	4 cut(s)	46, 103, 108, 129
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	360
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	2 cut(s)	123, 190
HpaII	CCGG	4 cut(s)	46, 103, 108, 129
HphI	GGTGA	2 cut(s)	165, 316
Hpy166II	GTNNAC	2 cut(s)	194, 240
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	3 cut(s)	25, 46, 69
Hpy8I	GTNNAC	2 cut(s)	194, 240
HpyAV	CCTTC	2 cut(s)	295, 328
HpyCH4V	TGCA	3 cut(s)	16, 179, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 185, 289
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	360
Kpn2I	TCCGGA	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	114, 200, 266
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	9 cut(s)	26, 48, 59, 82, 116, 121, 142, 189, 189
LweI	GCATC	2 cut(s)	30, 141
MalI	GATC	3 cut(s)	116, 202, 268
MboI	GATC	3 cut(s)	114, 200, 266
MboII	GAAGA	3 cut(s)	32, 132, 235
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	247
MlyI	GAGTC	2 cut(s)	132, 199
MnlI	CCTC	3 cut(s)	262, 346, 350
MroI	TCCGGA	1 cut(s)	45
MseI	TTAA	1 cut(s)	228
MspI	CCGG	4 cut(s)	46, 103, 108, 129
MspR9I	CCNGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	27, 185, 289
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	3 cut(s)	114, 200, 266
NlaIII	CATG	1 cut(s)	360
NlaIV	GGNNCC	1 cut(s)	67
NmeAIII	GCCGAG	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	2 cut(s)	131, 198
PpsI	GAGTC	2 cut(s)	131, 198
Psp124BI	GAGCTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	4 cut(s)	48, 66, 105, 337
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	3 cut(s)	114, 200, 266
Sau96I	GGNCC	4 cut(s)	48, 66, 105, 337
SchI	GAGTC	2 cut(s)	132, 199
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	4 cut(s)	11, 162, 178, 306
SfaNI	GCATC	2 cut(s)	30, 141
Sfr274I	CTCGAG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	48, 66
SlaI	CTCGAG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	4 cut(s)	51, 83, 151, 283
SspI	AATATT	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	106
TaqI	TCGA	3 cut(s)	26, 96, 265
TasI	AATT	1 cut(s)	247
TauI	GCSGC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	156
VpaK11BI	GGWCC	2 cut(s)	48, 66
XapI	RAATTY	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.