Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Reverse (-)

5212556 .. 5214840

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06670.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTCCCAACTCCCGAAAGAAAAATAAAAAATAAAAAATGTTGTTTCCACCAAACACTCGTACTTACACGGTTGGGCTTTTCGTCACGGGAACCATTGTTGCGCTTTCGCCTGAGGCAACCTCGAAGCTTTTCGCTCCCACCAAAAATGGCCCGATCTCTACGACAGGGCTTCAACATCGCCCGAGCGCACGTGCTATCGCGGCCGCGATGGGCGTCGTCGCAGTCTTCGGAGGTGCTGGTGGAGGTCAATGCCCCCGACTTTGGCATGATCTCCGGAATCCCCGAACAGCATCTCCGGCGAAGGGTTATAATCTATTCGCCTGCTCGAACTGCGAGCCAACAAGGTTCTGGGAAAGTCGGGAGATGGAAAATTAATTTTCTTTCAACGCAGAAGTGGGAAAACCCATTGATGGGATGGACATCTACAGGTGATCCCTACGCCAATGTTGGTGAAGCAGGACTGAGTTTTGAGAGTGAAGAAGCTGCAAAGGCATTTGCTGAGAAACATGGCTGGGATTATACGGTCAGGAAGCGTCACACCCCACTTTTGAAGGTCAAGGCTTATGCAGACAACTTCAAGTGGAAGGGCCCTGAAAAGAGTGAGAAGACTGCAGCTGATGCTGCGAACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

212

Amino Acids

23.99

Weight (kDa)

10.36

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccII	CGCG	2 cut(s)	202, 208
AccIII	TCCGGA	1 cut(s)	275
AciI	CCGC	2 cut(s)	202, 206
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	203
AcvI	CACGTG	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	4 cut(s)	263, 304, 412, 413
AgsI	TTSAA	4 cut(s)	175, 387, 553, 580
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AluBI	AGCT	3 cut(s)	129, 485, 617
AluI	AGCT	3 cut(s)	129, 485, 617
AlwI	GGATC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	183
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	3 cut(s)	150, 203, 589
ApaI	GGGCCC	1 cut(s)	593
ApeKI	GCWGC	3 cut(s)	485, 614, 623
AseI	ATTAAT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	105, 190
AspS9I	GGNCC	3 cut(s)	151, 589, 590
AsuHPI	GGTGA	2 cut(s)	443, 464
AvaI	CYCGRG	1 cut(s)	183
AxyI	CCTNAGG	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	593
BbrPI	CACGTG	1 cut(s)	193
BbsI	GAAGAC	2 cut(s)	219, 614
BbvI	GCAGC	3 cut(s)	472, 610, 626
BccI	CCATC	4 cut(s)	204, 360, 406, 411
BfmI	CTRYAG	2 cut(s)	426, 612
BisI	GCNGC	5 cut(s)	203, 206, 486, 615, 624
BlsI	GCNGC	5 cut(s)	204, 207, 487, 616, 625
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	151, 589, 590
BmiI	GGNNCC	2 cut(s)	93, 591
BmsI	GCATC	2 cut(s)	301, 610
BpiI	GAAGAC	2 cut(s)	219, 614
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BsaAI	YACGTR	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 304, 412, 413
Bse21I	CCTNAGG	1 cut(s)	113
Bse8I	GATNNNNATC	1 cut(s)	421
BseAI	TCCGGA	1 cut(s)	275
BseGI	GGATG	1 cut(s)	422
BseJI	GATNNNNATC	1 cut(s)	421
BseLI	CCNNNNNNNGG	4 cut(s)	263, 304, 412, 413
BseMII	CTCAG	3 cut(s)	104, 455, 492
BseSI	GKGCMC	1 cut(s)	593
BseX3I	CGGCCG	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	472, 610, 626
BseYI	CCCAGC	1 cut(s)	513
Bsh1236I	CGCG	2 cut(s)	202, 208
Bsh1285I	CGRYCG	1 cut(s)	206
BshFI	GGCC	3 cut(s)	152, 205, 591
BsiEI	CGRYCG	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	2 cut(s)	276, 298
BslI	CCNNNNNNNGG	4 cut(s)	263, 304, 412, 413
BsnI	GGCC	3 cut(s)	152, 205, 591
BsoBI	CYCGRG	1 cut(s)	183
Bsp120I	GGGCCC	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	3 cut(s)	155, 270, 433
BspACI	CCGC	2 cut(s)	202, 206
BspANI	GGCC	3 cut(s)	152, 205, 591
BspCNI	CTCAG	3 cut(s)	105, 456, 493
BspEI	TCCGGA	1 cut(s)	275
BspFNI	CGCG	2 cut(s)	202, 208
BspLI	GGNNCC	2 cut(s)	93, 591
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	1 cut(s)	428
BssMI	GATC	3 cut(s)	155, 270, 433
BssNI	GRCGYC	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	72, 526
BstACI	GRCGYC	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	324, 337
BstDEI	CTNAG	3 cut(s)	113, 464, 501
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	2 cut(s)	202, 208
BstHHI	GCGC	2 cut(s)	105, 190
BstKTI	GATC	3 cut(s)	158, 273, 436
BstMBI	GATC	3 cut(s)	155, 270, 433
BstMCI	CGRYCG	1 cut(s)	206
BstMWI	GCNNNNNNNGC	6 cut(s)	202, 298, 332, 491, 620, 623
BstSFI	CTRYAG	2 cut(s)	426, 612
BstSLI	GKGCMC	1 cut(s)	593
BstUI	CGCG	2 cut(s)	202, 208
BstV1I	GCAGC	3 cut(s)	472, 610, 626
BstV2I	GAAGAC	2 cut(s)	219, 614
BstZI	CGGCCG	1 cut(s)	203
Bsu36I	CCTNAGG	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	152, 205, 591
BtgZI	GCGATG	2 cut(s)	163, 223
BtsCI	GGATG	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	324, 337
CciNI	GCGGCCGC	1 cut(s)	203
CfoI	GCGC	2 cut(s)	105, 190
Cfr13I	GGNCC	3 cut(s)	151, 589, 590
CseI	GACGC	2 cut(s)	204, 524
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	2 cut(s)	268, 509
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	3 cut(s)	113, 464, 501
DpnI	GATC	3 cut(s)	157, 272, 435
DpnII	GATC	3 cut(s)	155, 270, 433
EaeI	YGGCCR	1 cut(s)	203
EagI	CGGCCG	1 cut(s)	203
EclXI	CGGCCG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	593
Eco52I	CGGCCG	1 cut(s)	203
Eco72I	CACGTG	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	589, 590
EcoT38I	GRGCYC	1 cut(s)	593
FaeI	CATG	2 cut(s)	271, 512
FaiI	YATR	5 cut(s)	269, 311, 510, 522, 567
FatI	CATG	2 cut(s)	267, 508
Fnu4HI	GCNGC	5 cut(s)	203, 206, 486, 615, 624
FokI	GGATG	1 cut(s)	429
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	5 cut(s)	203, 206, 486, 615, 624
GlaI	GCGC	2 cut(s)	104, 189
GluI	GCNGC	5 cut(s)	203, 206, 486, 615, 624
GsaI	CCCAGC	1 cut(s)	517
HaeIII	GGCC	3 cut(s)	152, 205, 591
HapII	CCGG	2 cut(s)	276, 298
HgaI	GACGC	2 cut(s)	204, 524
HhaI	GCGC	2 cut(s)	105, 190
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	271, 512
Hin6I	GCGC	2 cut(s)	103, 188
HinP1I	GCGC	2 cut(s)	103, 188
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	1 cut(s)	279
HpaII	CCGG	2 cut(s)	276, 298
HphI	GGTGA	2 cut(s)	443, 464
Hpy188I	TCNGA	2 cut(s)	232, 635
Hpy188III	TCNNGA	4 cut(s)	14, 276, 361, 529
Hpy99I	CGWCG	2 cut(s)	220, 223
HpyAV	CCTTC	3 cut(s)	297, 547, 580
HpyCH4III	ACNGT	2 cut(s)	72, 526
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	488, 569, 614
HpyF10VI	GCNNNNNNNGC	6 cut(s)	202, 298, 332, 491, 620, 623
HpyF3I	CTNAG	3 cut(s)	113, 464, 501
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	271, 512
HspAI	GCGC	2 cut(s)	103, 188
Kpn2I	TCCGGA	1 cut(s)	275
Kzo9I	GATC	3 cut(s)	155, 270, 433
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	3 cut(s)	472, 610, 626
LweI	GCATC	2 cut(s)	301, 610
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	84, 536
MalI	GATC	3 cut(s)	157, 272, 435
MboI	GATC	3 cut(s)	155, 270, 433
MboII	GAAGA	3 cut(s)	219, 491, 619
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	2 cut(s)	372, 376
MnlI	CCTC	4 cut(s)	108, 132, 226, 238
MroI	TCCGGA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	2 cut(s)	276, 298
MvnI	CGCG	2 cut(s)	202, 208
MwoI	GCNNNNNNNGC	6 cut(s)	202, 298, 332, 491, 620, 623
NdeII	GATC	3 cut(s)	155, 270, 433
NlaIII	CATG	2 cut(s)	271, 512
NlaIV	GGNNCC	2 cut(s)	93, 591
NmuCI	GTSAC	2 cut(s)	84, 536
NotI	GCGGCCGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	279
PkrI	GCNGC	5 cut(s)	204, 207, 487, 616, 625
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	193
PshBI	ATTAAT	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	311
PspCI	CACGTG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	93, 591
PspOMI	GGGCCC	1 cut(s)	589
PspPI	GGNCC	3 cut(s)	151, 589, 590
PstI	CTGCAG	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	5 cut(s)	203, 206, 486, 615, 624
Sau3AI	GATC	3 cut(s)	155, 270, 433
Sau96I	GGNCC	3 cut(s)	151, 589, 590
SduI	GDGCHC	1 cut(s)	593
SfaNI	GCATC	2 cut(s)	301, 610
SfcI	CTRYAG	2 cut(s)	426, 612
Sse9I	AATT	2 cut(s)	372, 376
SsiI	CCGC	2 cut(s)	202, 206
TaaI	ACNGT	2 cut(s)	72, 526
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	124, 328
TasI	AATT	2 cut(s)	372, 376
TauI	GCSGC	2 cut(s)	205, 208
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TseFI	GTSAC	2 cut(s)	84, 536
TseI	GCWGC	3 cut(s)	485, 614, 623
Tsp45I	GTSAC	2 cut(s)	84, 536
VspI	ATTAAT	1 cut(s)	375
XcmI	CCANNNNNNNNNTGG	2 cut(s)	347, 414
XmnI	GAANNNNTTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.