Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Forward (+)

19944188 .. 19948250

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG204700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATCCGAGTAAAACTACGTAAGCTCTTTCTCTGTTTACCAGAAACGAAAAGTACACCCTCTGTTTTCACTATTGAGTTTCACATATTCACAGAGCGCGCGAGTTTGGGTTCCTCCGTTGGTTCGTCAAAATCGGCGATGGCGAGCTCCCTGCAACGCATCTCGAGCCACGCTCGTCTTCTCCGGACCGCTATCGCTTCTGGGTCCAGACCATTCTCGGCCGACGCTTTGGTCGAGTACAGGCCCGGCGAGATCGGAAGAGTCTCCGGCATCCCCGATGAACATCTCCGCAGAAAGGTTGTGATATACTCACCTGCAAGAACTGCGAGTCAACAAGGATCAGGGAAAGTTGGCAAGTGGAAGATTAACTTTGTGTCCACACAGAAGTATGTTTTCGGTTTCGAATTCGAGTGTAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

140

Amino Acids

15.54

Weight (kDa)

10.43

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
AasI	GACNNNNNNGTC	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	322
AccII	CGCG	2 cut(s)	99, 101
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	2 cut(s)	189, 289
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	404
AfaI	GTAC	2 cut(s)	55, 239
AfiI	CCNNNNNNNGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	25, 147
AluI	AGCT	2 cut(s)	25, 147
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	163
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	2 cut(s)	219, 242
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	99, 101
AspS9I	GGNCC	3 cut(s)	186, 204, 243
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	303
AsuII	TTCGAA	1 cut(s)	402
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	2 cut(s)	186, 204
BanII	GRGCYC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	149
BccI	CCATC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	2 cut(s)	186, 204
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	186, 204, 243
BmiI	GGNNCC	2 cut(s)	112, 205
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	168, 279
BpiI	GAAGAC	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu14I	TTCGAA	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	183
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	295
BsePI	GCGCGC	1 cut(s)	97
BseX3I	CGGCCG	1 cut(s)	219
Bsh1236I	CGCG	2 cut(s)	99, 101
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	221, 244
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	184, 246, 267
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	221, 244
BsoBI	CYCGRG	1 cut(s)	163
Bsp119I	TTCGAA	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	3, 252, 338
BspACI	CCGC	2 cut(s)	189, 289
BspANI	GGCC	2 cut(s)	221, 244
BspEI	TCCGGA	1 cut(s)	183
BspFNI	CGCG	2 cut(s)	99, 101
BspLI	GGNNCC	2 cut(s)	112, 205
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	346
BspT104I	TTCGAA	1 cut(s)	402
BssHII	GCGCGC	1 cut(s)	97
BssMI	GATC	3 cut(s)	3, 252, 338
Bst6I	CTCTTC	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	99, 145
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	2 cut(s)	99, 101
BstHHI	GCGC	2 cut(s)	99, 101
BstKTI	GATC	3 cut(s)	6, 255, 341
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	3 cut(s)	3, 252, 338
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 323
BstSCI	CCNGG	1 cut(s)	244
BstSNI	TACGTA	1 cut(s)	20
BstUI	CGCG	2 cut(s)	99, 101
BstV2I	GAAGAC	1 cut(s)	170
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	221, 244
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	99, 145
CfoI	GCGC	2 cut(s)	99, 101
Cfr13I	GGNCC	3 cut(s)	186, 204, 243
CpoI	CGGWCCG	1 cut(s)	186
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	54, 238
CspI	CGGWCCG	1 cut(s)	186
CviJI	RGCY	5 cut(s)	25, 147, 168, 221, 244
CviKI_1	RGCY	5 cut(s)	25, 147, 168, 221, 244
CviQI	GTAC	2 cut(s)	54, 238
DpnI	GATC	3 cut(s)	5, 254, 340
DpnII	GATC	3 cut(s)	3, 252, 338
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	147
EclXI	CGGCCG	1 cut(s)	219
Eco105I	TACGTA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	186, 204
Eco52I	CGGCCG	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	404
EcoT38I	GRGCYC	1 cut(s)	149
FaiI	YATR	3 cut(s)	86, 307, 390
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	149
GlaI	GCGC	2 cut(s)	98, 100
HaeIII	GGCC	2 cut(s)	221, 244
HapII	CCGG	3 cut(s)	184, 246, 267
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	2 cut(s)	99, 101
Hin6I	GCGC	2 cut(s)	97, 99
HinP1I	GCGC	2 cut(s)	97, 99
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HinfI	GANTC	2 cut(s)	261, 328
HpaII	CCGG	3 cut(s)	184, 246, 267
HphI	GGTGA	1 cut(s)	303
Hpy166II	GTNNAC	4 cut(s)	38, 56, 332, 378
Hpy188I	TCNGA	2 cut(s)	8, 257
Hpy188III	TCNNGA	3 cut(s)	163, 184, 207
Hpy8I	GTNNAC	4 cut(s)	38, 56, 332, 378
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	154, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 323
HpySE526I	ACGT	1 cut(s)	19
HspAI	GCGC	2 cut(s)	97, 99
Kpn2I	TCCGGA	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	3, 252, 338
LmnI	GCTCC	1 cut(s)	152
LweI	GCATC	2 cut(s)	168, 279
MaeII	ACGT	1 cut(s)	19
MalI	GATC	3 cut(s)	5, 254, 340
MboI	GATC	3 cut(s)	3, 252, 338
MboII	GAAGA	3 cut(s)	170, 270, 373
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	2 cut(s)	404, 418
MlyI	GAGTC	2 cut(s)	270, 337
MnlI	CCTC	2 cut(s)	70, 124
MroI	TCCGGA	1 cut(s)	183
MseI	TTAA	1 cut(s)	366
MspI	CCGG	3 cut(s)	184, 246, 267
MspR9I	CCNGG	1 cut(s)	246
MvnI	CGCG	2 cut(s)	99, 101
MwoI	GCNNNNNNNGC	2 cut(s)	165, 323
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	3 cut(s)	3, 252, 338
NlaIV	GGNNCC	2 cut(s)	112, 205
NmeAIII	GCCGAG	1 cut(s)	197
NspV	TTCGAA	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	163
PaqCI	CACCTGC	1 cut(s)	322
PauI	GCGCGC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	2 cut(s)	140, 231
PleI	GAGTC	2 cut(s)	269, 336
PpsI	GAGTC	2 cut(s)	269, 336
Ppu21I	YACGTR	1 cut(s)	20
Psp124BI	GAGCTC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	112, 205
PspPI	GGNCC	3 cut(s)	186, 204, 243
PteI	GCGCGC	1 cut(s)	97
RsaI	GTAC	2 cut(s)	55, 239
RsaNI	GTAC	2 cut(s)	54, 238
Rsr2I	CGGWCCG	1 cut(s)	186
RsrII	CGGWCCG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	366
Sau3AI	GATC	3 cut(s)	3, 252, 338
Sau96I	GGNCC	3 cut(s)	186, 204, 243
SchI	GAGTC	2 cut(s)	270, 337
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	5 cut(s)	22, 27, 149, 300, 316
SfaNI	GCATC	2 cut(s)	168, 279
Sfr274I	CTCGAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	402
SinI	GGWCC	2 cut(s)	186, 204
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SnaBI	TACGTA	1 cut(s)	20
Sse9I	AATT	2 cut(s)	404, 418
SsiI	CCGC	2 cut(s)	189, 289
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	244
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	4 cut(s)	164, 234, 402, 408
TasI	AATT	2 cut(s)	404, 418
TatI	WGTACW	2 cut(s)	53, 237
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	1 cut(s)	106
VpaK11BI	GGWCC	2 cut(s)	186, 204
XapI	RAATTY	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.