Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000373.1

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Reverse (-)

56476 .. 57608

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000373.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggcaagctctctacgacatggattcagcaaagcccgatcacctattctctcccggaccagatggttgtcgtcggaatctcaggccctggtggagaccaggatccccgacgtcggaatcatatctggaatccccgaacagcatctcaaaagaagggtcgtaatttattctcctgctcgaacagcatcacagcaaggttctgggaaagttgggaaatggaaaattaatttcctttctacgcagaagtgggaaaatccattgatgggttggacatccacaggtgatccctatgccaatgtgggtgaggcagcactgactttcgaaagtgaagaagctgcaagggaatttgctgagaaacatggttgggattatacggtcaggaagcgtcacacaccacttctaagggccaagacttatgcagacaacttcaagtggaaggggctaccgaagagcgacgaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

154

Amino Acids

17.43

Weight (kDa)

9.77

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AclWI	GGATC	3 cut(s)	97, 110, 278
AcsI	RAATTY	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	113, 263
AgsI	TTSAA	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	87, 98
AluBI	AGCT	2 cut(s)	9, 335
AluI	AGCT	2 cut(s)	9, 335
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	3 cut(s)	97, 110, 278
AlwNI	CAGNNNCTG	1 cut(s)	88
AoxI	GGCC	2 cut(s)	84, 405
ApeKI	GCWGC	2 cut(s)	308, 335
ApoI	RAATTY	1 cut(s)	344
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AseI	ATTAAT	1 cut(s)	225
AspS9I	GGNCC	3 cut(s)	57, 85, 405
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	33, 293, 314
AsuII	TTCGAA	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	320, 322
BccI	CCATC	2 cut(s)	57, 256
BciT130I	CCWGG	2 cut(s)	89, 100
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	309, 336
BlsI	GCNGC	2 cut(s)	310, 337
Bme1390I	CCNGG	3 cut(s)	55, 89, 100
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	3 cut(s)	57, 85, 405
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	3 cut(s)	55, 89, 100
BmsI	GCATC	2 cut(s)	151, 194
Bpu14I	TTCGAA	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 263
BseBI	CCWGG	2 cut(s)	89, 100
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	113, 263
BseMII	CTCAG	2 cut(s)	95, 342
BseXI	GCAGC	2 cut(s)	320, 322
BshFI	GGCC	2 cut(s)	86, 407
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	113, 263
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	86, 407
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	38, 102, 283
BspANI	GGCC	2 cut(s)	86, 407
BspCNI	CTCAG	2 cut(s)	94, 343
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	3 cut(s)	97, 110, 278
BspQI	GCTCTTC	1 cut(s)	443
BspT104I	TTCGAA	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	38, 102, 283
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	89, 100
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	443
BstACI	GRCGYC	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	81, 351, 401
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	3 cut(s)	41, 105, 286
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	38, 102, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	2 cut(s)	89, 100
BstSCI	CCNGG	3 cut(s)	53, 87, 98
BstV1I	GCAGC	2 cut(s)	320, 322
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	86, 407
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	88
Cfr13I	GGNCC	3 cut(s)	57, 85, 405
CseI	GACGC	1 cut(s)	374
CviAII	CATG	2 cut(s)	20, 359
CviJI	RGCY	6 cut(s)	9, 35, 86, 335, 407, 442
CviKI_1	RGCY	6 cut(s)	9, 35, 86, 335, 407, 442
DdeI	CTNAG	3 cut(s)	81, 351, 401
DpnI	GATC	3 cut(s)	40, 104, 285
DpnII	GATC	3 cut(s)	38, 102, 283
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	87, 98
FaeI	CATG	2 cut(s)	23, 362
FaiI	YATR	6 cut(s)	21, 122, 291, 360, 372, 417
FatI	CATG	2 cut(s)	19, 358
Fnu4HI	GCNGC	2 cut(s)	309, 336
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	309, 336
GluI	GCNGC	2 cut(s)	309, 336
HaeIII	GGCC	2 cut(s)	86, 407
HapII	CCGG	1 cut(s)	55
HgaI	GACGC	1 cut(s)	374
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	23, 362
HinfI	GANTC	4 cut(s)	24, 77, 117, 129
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	3 cut(s)	33, 293, 314
Hpy188I	TCNGA	2 cut(s)	76, 116
Hpy188III	TCNNGA	2 cut(s)	126, 379
Hpy99I	CGWCG	4 cut(s)	76, 113, 116, 458
HpyAV	CCTTC	2 cut(s)	147, 430
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	338, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	3 cut(s)	81, 351, 401
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	23, 362
Kzo9I	GATC	3 cut(s)	38, 102, 283
LguI	GCTCTTC	1 cut(s)	443
Lsp1109I	GCAGC	2 cut(s)	320, 322
LweI	GCATC	2 cut(s)	151, 194
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	3 cut(s)	40, 104, 285
MboI	GATC	3 cut(s)	38, 102, 283
MboII	GAAGA	2 cut(s)	341, 460
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	4 cut(s)	162, 222, 226, 344
MmeI	TCCRAC	3 cut(s)	54, 94, 248
MnlI	CCTC	2 cut(s)	298, 451
MseI	TTAA	1 cut(s)	225
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	3 cut(s)	55, 89, 100
MvaI	CCWGG	2 cut(s)	89, 100
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	3 cut(s)	38, 102, 283
NlaIII	CATG	2 cut(s)	23, 362
NlaIV	GGNNCC	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	443
PfeI	GAWTC	4 cut(s)	24, 77, 117, 129
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	310, 337
PshBI	ATTAAT	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	87, 98
PspGI	CCWGG	2 cut(s)	87, 98
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	3 cut(s)	57, 85, 405
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	309, 336
Sau3AI	GATC	3 cut(s)	38, 102, 283
Sau96I	GGNCC	3 cut(s)	57, 85, 405
ScrFI	CCNGG	3 cut(s)	55, 89, 100
SetI	ASST	6 cut(s)	11, 46, 114, 199, 283, 337
SfaNI	GCATC	2 cut(s)	151, 194
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	4 cut(s)	162, 222, 226, 344
StyD4I	CCNGG	3 cut(s)	53, 87, 98
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	178, 321
TasI	AATT	4 cut(s)	162, 222, 226, 344
TfiI	GAWTC	4 cut(s)	24, 77, 117, 129
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	308, 335
Tsp45I	GTSAC	1 cut(s)	386
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.