Rh6AG487900

NADH dehydrogenase ubiquinone iron-sulfur protein 4, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002607
Physical Location & Seq
Forward (+)
66569006 .. 66573004
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG487900.1

Sequence Viewer

Length: 474 bp
ATGGCAAGCTCTCTACGACATGGATTCACCAAAGCCCGATCACCTATTCTCTCCCGGACCAGATGGTTGTCGTCGGAATCTCAGGCCCTGGTGGAGACCAGGATCCCCGACGTCGGAATCATATCTGGAATCCCCGAACAGCATCTCAAAAGAAGGGTCGTAATTTATTCTCCTGCTCGAACAGCATCACAGCAAGGTTCTGGGAAAGTTGGGAAATGGAAAATTAATTTCCTTTCTACGCAGAAGTGGGAAAATCCATTGATGGGTTGGACATCCACAGGTGATCCCTATGCCAATGTGGGTGAGGCAGCGCTGACTTTCGAAAGTGAAGAAGCTGCAAGGGAATTTGCTGAGAAACATGGTTGGGATTATACGGTGCGTGCCTACTCGAGTATTAATCTTTTTTGTGGCTATATAGACTTAACCCGAATTTTGTATCCTAAGAAAGTTCGTTCCTGTTTTGTTGTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
ETC_C1_NDUFA4

Protein Analysis

157

Amino Acids

17.74

Weight (kDa)

9.73

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDUS4 PF04800 52 - 128 3e-25 NADH dehydrogenase ubiquinone Fe-S protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
AclWI GGATC 3 cut(s) 97, 110, 278
AcsI RAATTY 2 cut(s) 344, 429
AcyI GRCGYC 1 cut(s) 111
AfeI AGCGCT 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 113, 263
AjnI CCWGG 2 cut(s) 87, 98
AluBI AGCT 2 cut(s) 9, 335
AluI AGCT 2 cut(s) 9, 335
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 3 cut(s) 97, 110, 278
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 388
Aor51HI AGCGCT 1 cut(s) 312
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 308, 335
ApoI RAATTY 2 cut(s) 344, 429
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AseI ATTAAT 2 cut(s) 225, 396
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 57, 85
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 4 cut(s) 19, 33, 293, 314
AsuII TTCGAA 1 cut(s) 321
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 1 cut(s) 57
BamHI GGATCC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 320, 322
BccI CCATC 2 cut(s) 57, 256
BciT130I CCWGG 2 cut(s) 89, 100
BciVI GTATCC 1 cut(s) 447
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 314
BfuI GTATCC 1 cut(s) 447
BisI GCNGC 2 cut(s) 309, 336
BlsI GCNGC 2 cut(s) 310, 337
Bme1390I CCNGG 3 cut(s) 55, 89, 100
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 2 cut(s) 57, 85
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 3 cut(s) 55, 89, 100
BmsI GCATC 2 cut(s) 151, 194
Bpu14I TTCGAA 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 263
BseBI CCWGG 2 cut(s) 89, 100
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 2 cut(s) 113, 263
BseMII CTCAG 2 cut(s) 95, 342
BseXI GCAGC 2 cut(s) 320, 322
BshFI GGCC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 113, 263
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 388
Bsp119I TTCGAA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 38, 102, 283
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 94, 343
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 3 cut(s) 97, 110, 278
BspT104I TTCGAA 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 38, 102, 283
BssNI GRCGYC 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 89, 100
Bst4CI ACNGT 1 cut(s) 376
BstACI GRCGYC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 7, 381
BstDEI CTNAG 3 cut(s) 81, 351, 441
BstF5I GGATG 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 3 cut(s) 41, 105, 286
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 38, 102, 283
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 89, 100
BstSCI CCNGG 3 cut(s) 53, 87, 98
BstV1I GCAGC 2 cut(s) 320, 322
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuI GTATCC 1 cut(s) 447
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 272
Cac8I GCNNGC 2 cut(s) 7, 381
CaiI CAGNNNCTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 57, 85
CviAII CATG 2 cut(s) 20, 359
CviJI RGCY 5 cut(s) 9, 35, 86, 335, 411
CviKI_1 RGCY 5 cut(s) 9, 35, 86, 335, 411
DdeI CTNAG 3 cut(s) 81, 351, 441
DpnI GATC 3 cut(s) 40, 104, 285
DpnII GATC 3 cut(s) 38, 102, 283
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 57
Eco47III AGCGCT 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 87, 98
FaeI CATG 2 cut(s) 23, 362
FaiI YATR 7 cut(s) 21, 122, 291, 360, 372, 414, 416
FatI CATG 2 cut(s) 19, 358
Fnu4HI GCNGC 2 cut(s) 309, 336
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 309, 336
GlaI GCGC 1 cut(s) 312
GluI GCNGC 2 cut(s) 309, 336
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 55
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 2 cut(s) 23, 362
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HinfI GANTC 4 cut(s) 24, 77, 117, 129
HpaII CCGG 1 cut(s) 55
HphI GGTGA 4 cut(s) 19, 33, 293, 314
Hpy188I TCNGA 2 cut(s) 76, 116
Hpy188III TCNNGA 1 cut(s) 126
Hpy99I CGWCG 3 cut(s) 76, 113, 116
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 81, 351, 441
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 2 cut(s) 23, 362
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 3 cut(s) 38, 102, 283
Lsp1109I GCAGC 2 cut(s) 320, 322
LweI GCATC 2 cut(s) 151, 194
MaeII ACGT 1 cut(s) 111
MalI GATC 3 cut(s) 40, 104, 285
MboI GATC 3 cut(s) 38, 102, 283
MboII GAAGA 1 cut(s) 341
MflI RGATCY 1 cut(s) 102
MluCI AATT 5 cut(s) 162, 222, 226, 344, 429
MmeI TCCRAC 3 cut(s) 54, 94, 248
MnlI CCTC 1 cut(s) 298
MseI TTAA 3 cut(s) 225, 396, 422
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 3 cut(s) 55, 89, 100
MvaI CCWGG 2 cut(s) 89, 100
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 55
NdeII GATC 3 cut(s) 38, 102, 283
NlaIII CATG 2 cut(s) 23, 362
NlaIV GGNNCC 1 cut(s) 104
NspV TTCGAA 1 cut(s) 321
PaeR7I CTCGAG 1 cut(s) 388
PfeI GAWTC 4 cut(s) 24, 77, 117, 129
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 2 cut(s) 310, 337
PshBI ATTAAT 2 cut(s) 225, 396
Psp6I CCWGG 2 cut(s) 87, 98
PspGI CCWGG 2 cut(s) 87, 98
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 2 cut(s) 57, 85
PspXI VCTCGAGB 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 102
SaqAI TTAA 3 cut(s) 225, 396, 422
SatI GCNGC 2 cut(s) 309, 336
Sau3AI GATC 3 cut(s) 38, 102, 283
Sau96I GGNCC 2 cut(s) 57, 85
ScrFI CCNGG 3 cut(s) 55, 89, 100
SetI ASST 6 cut(s) 11, 46, 114, 199, 283, 337
SfaNI GCATC 2 cut(s) 151, 194
Sfr274I CTCGAG 1 cut(s) 388
SfuI TTCGAA 1 cut(s) 321
SinI GGWCC 1 cut(s) 57
SlaI CTCGAG 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 5 cut(s) 162, 222, 226, 344, 429
StyD4I CCNGG 3 cut(s) 53, 87, 98
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 114
TaqI TCGA 3 cut(s) 178, 321, 389
TasI AATT 5 cut(s) 162, 222, 226, 344, 429
TfiI GAWTC 4 cut(s) 24, 77, 117, 129
Tru1I TTAA 3 cut(s) 225, 396, 422
Tru9I TTAA 3 cut(s) 225, 396, 422
TseI GCWGC 2 cut(s) 308, 335
VpaK11BI GGWCC 1 cut(s) 57
VspI ATTAAT 2 cut(s) 225, 396
XapI RAATTY 2 cut(s) 344, 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
XhoI CTCGAG 1 cut(s) 388
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.