FvH4_1g02240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008103
Physical Location & Seq
Forward (+)
1210740 .. 1212305
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02240.t1

Sequence Viewer

Length: 897 bp
ATGTTGAAGATATTGAAGAAGATTGGGAAGAACATGAGGTATTTGTGCACAGAAGCACAGGCAAAACGACCTCATGGCAATCTTCGTAAAGGTGTAGGGGTAACACCCGAGCTTGAAGTTTTATTCAATAATTTGGGTCCTTCTAAACACGAAAAGTTGTACGAGGAAGACATTAAGGACTTGCATGAATTTCTTAACACAATCATACCTAAGTTGCAGGATAAGTCGATACAAGAACCAGTTAAGAGGTGGAAGAAGTTTTTGTCTGATACTTGTATACATGTTGAGAAAGATTTTACTGTAGTAGAAGCATCAGAGATACATCCTCCCTATCTTAAACTCAATCATGTTAGAATGATTGTCAATTATCCAACCTCCTGGGACGTTGACGAAGAACTCGAATTCTTGGCAAAGGTGCATAGCTTATGCAAGCGTGCCAATTTGTTGATAAATAAAGATTTTGAAAATCATCTCGTGAATTGTTATCCTAAGTGGAACGACTGCTTTGAAGCCTCGGCTACGGCCGGAAAAACTAGTGGCTTAAATGAAGTCTACCAATTTGGTGTTGGTCAAGGAAATTACGTCGACAGCTCTACTGGGGATCTATGTGTGCCAACCATTGTTATTTTTGCTCATAGTAGTGTCAAGCACTACATGGAAAGAGCACAAGATTATAACATTTTACATAAGTGTGAAAATGTTACAGATTCTGGTCATATGGACCCATACCTTACACCAGGTGAAATCCTTGCCGATGTACAGAATGAATTTCCCAATTTGATCGAGAATATTTATCAATCCTATTACAAAGCCGTAGCGAAAGGCTACAAACATCCCCGCTTCGGTATTGAGAAAATATTACCGCAAGTAGATAAAAGCGGGATAGGATACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

34.14

Weight (kDa)

6.5

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AccI GTMKAC 3 cut(s) 277, 552, 585
AciI CCGC 3 cut(s) 838, 863, 879
AclWI GGATC 1 cut(s) 609
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 3 cut(s) 188, 401, 767
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 2 cut(s) 161, 759
AfiI CCNNNNNNNGG 1 cut(s) 842
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 6 cut(s) 7, 16, 116, 127, 464, 509
AhlI ACTAGT 1 cut(s) 533
AjnI CCWGG 2 cut(s) 377, 736
AluBI AGCT 3 cut(s) 112, 423, 591
AluI AGCT 3 cut(s) 112, 423, 591
Alw21I GWGCWC 2 cut(s) 50, 667
Alw44I GTGCAC 1 cut(s) 46
AlwI GGATC 1 cut(s) 609
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 1 cut(s) 522
ApaLI GTGCAC 1 cut(s) 46
ApoI RAATTY 3 cut(s) 188, 401, 767
AspS9I GGNCC 2 cut(s) 137, 721
AsuHPI GGTGA 1 cut(s) 752
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 2 cut(s) 137, 721
BaeGI GKGCMC 1 cut(s) 50
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 50, 667
BceAI ACGGC 2 cut(s) 537, 797
BciT130I CCWGG 2 cut(s) 379, 738
BciVI GTATCC 1 cut(s) 881
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 2 cut(s) 534, 895
BfmI CTRYAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 881
Bme1390I CCNGG 2 cut(s) 379, 738
Bme18I GGWCC 2 cut(s) 137, 721
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 137, 721
BmiI GGNNCC 2 cut(s) 138, 723
BmrFI CCNGG 2 cut(s) 379, 738
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 1 cut(s) 320
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 378, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 2 cut(s) 239, 601
BseBI CCWGG 2 cut(s) 379, 738
BseDI CCNNGG 2 cut(s) 378, 513
BseGI GGATG 2 cut(s) 322, 832
BseLI CCNNNNNNNGG 1 cut(s) 842
BseNI ACTGG 2 cut(s) 239, 601
BseSI GKGCMC 1 cut(s) 50
BseX3I CGGCCG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 1 cut(s) 524
BsiEI CGRYCG 1 cut(s) 525
BsiHKAI GWGCWC 2 cut(s) 50, 667
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 842
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 1 cut(s) 524
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 50, 667
Bsp1407I TGTACA 1 cut(s) 757
Bsp143I GATC 2 cut(s) 601, 780
BspACI CCGC 3 cut(s) 838, 863, 879
BspANI GGCC 1 cut(s) 524
BspLI GGNNCC 2 cut(s) 138, 723
BspPI GGATC 1 cut(s) 609
BsrGI TGTACA 1 cut(s) 757
BsrI ACTGG 2 cut(s) 239, 601
BssECI CCNNGG 2 cut(s) 378, 513
BssMI GATC 2 cut(s) 601, 780
BssNAI GTATAC 1 cut(s) 278
BssSI CACGAG 1 cut(s) 473
Bst1107I GTATAC 1 cut(s) 278
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 379, 738
Bst4CI ACNGT 1 cut(s) 301
BstAUI TGTACA 1 cut(s) 757
BstC8I GCNNGC 2 cut(s) 431, 435
BstDEI CTNAG 2 cut(s) 210, 489
BstF5I GGATG 2 cut(s) 322, 832
BstKTI GATC 2 cut(s) 604, 783
BstMBI GATC 2 cut(s) 601, 780
BstMCI CGRYCG 1 cut(s) 525
BstNI CCWGG 2 cut(s) 379, 738
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 377, 736
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 601
BstXI CCANNNNNNTGG 1 cut(s) 378
BstYI RGATCY 1 cut(s) 601
BstZ17I GTATAC 1 cut(s) 278
BstZI CGGCCG 1 cut(s) 522
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 1 cut(s) 524
BtsCI GGATG 2 cut(s) 322, 832
Cac8I GCNNGC 2 cut(s) 431, 435
CaiI CAGNNNCTG 1 cut(s) 710
Cfr13I GGNCC 2 cut(s) 137, 721
CsiI ACCWGGT 1 cut(s) 736
Csp6I GTAC 2 cut(s) 160, 758
CviAII CATG 6 cut(s) 34, 74, 185, 281, 347, 655
CviJI RGCY 9 cut(s) 112, 423, 512, 518, 524, 540, 591, 812, 825
CviKI_1 RGCY 9 cut(s) 112, 423, 512, 518, 524, 540, 591, 812, 825
CviQI GTAC 2 cut(s) 160, 758
DdeI CTNAG 2 cut(s) 210, 489
DpnI GATC 2 cut(s) 603, 782
DpnII GATC 2 cut(s) 601, 780
DraIII CACNNNGTG 1 cut(s) 740
EaeI YGGCCR 1 cut(s) 522
EagI CGGCCG 1 cut(s) 522
EclXI CGGCCG 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 137, 721
Eco52I CGGCCG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 377, 736
FaeI CATG 6 cut(s) 37, 77, 188, 284, 350, 658
FaqI GGGAC 1 cut(s) 395
FatI CATG 6 cut(s) 33, 73, 184, 280, 346, 654
FauI CCCGC 2 cut(s) 845, 872
FauNDI CATATG 1 cut(s) 717
FblI GTMKAC 3 cut(s) 277, 552, 585
FokI GGATG 2 cut(s) 309, 819
FspBI CTAG 2 cut(s) 534, 895
HaeIII GGCC 1 cut(s) 524
HapII CCGG 1 cut(s) 525
Hin1II CATG 6 cut(s) 37, 77, 188, 284, 350, 658
HincII GTYRAC 2 cut(s) 388, 586
HindII GTYRAC 2 cut(s) 388, 586
HinfI GANTC 1 cut(s) 707
HpaII CCGG 1 cut(s) 525
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 5 cut(s) 48, 278, 388, 553, 586
Hpy188I TCNGA 2 cut(s) 268, 316
Hpy188III TCNNGA 2 cut(s) 475, 784
Hpy8I GTNNAC 5 cut(s) 48, 278, 388, 553, 586
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 2 cut(s) 384, 582
HpyCH4V TGCA 5 cut(s) 48, 184, 217, 418, 429
HpyF3I CTNAG 2 cut(s) 210, 489
HpySE526I ACGT 2 cut(s) 384, 582
Hsp92II CATG 6 cut(s) 37, 77, 188, 284, 350, 658
Kzo9I GATC 2 cut(s) 601, 780
LweI GCATC 1 cut(s) 320
MabI ACCWGGT 1 cut(s) 736
MaeI CTAG 2 cut(s) 534, 895
MaeII ACGT 2 cut(s) 384, 582
MaeIII GTNAC 2 cut(s) 100, 700
MalI GATC 2 cut(s) 603, 782
MboI GATC 2 cut(s) 601, 780
MboII GAAGA 8 cut(s) 19, 28, 31, 40, 74, 179, 265, 404
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 2 cut(s) 50, 667
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 7 cut(s) 30, 81, 157, 240, 336, 385, 523
MseI TTAA 5 cut(s) 174, 195, 243, 336, 542
MslI CAYNNNNRTG 2 cut(s) 639, 690
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 2 cut(s) 379, 738
MvaI CCWGG 2 cut(s) 379, 738
NdeI CATATG 1 cut(s) 717
NdeII GATC 2 cut(s) 601, 780
NlaIII CATG 6 cut(s) 37, 77, 188, 284, 350, 658
NlaIV GGNNCC 2 cut(s) 138, 723
NmeAIII GCCGAG 1 cut(s) 494
NspI RCATGY 1 cut(s) 284
PciI ACATGT 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PfeI GAWTC 1 cut(s) 707
PpuMI RGGWCCY 1 cut(s) 137
PscI ACATGT 1 cut(s) 280
PsiI TTATAA 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 377, 736
PspGI CCWGG 2 cut(s) 377, 736
PspN4I GGNNCC 2 cut(s) 138, 723
PspPI GGNCC 2 cut(s) 137, 721
PspPPI RGGWCCY 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 2 cut(s) 161, 759
RsaNI GTAC 2 cut(s) 160, 758
RseI CAYNNNNRTG 2 cut(s) 639, 690
SalI GTCGAC 1 cut(s) 584
SaqAI TTAA 5 cut(s) 174, 195, 243, 336, 542
Sau3AI GATC 2 cut(s) 601, 780
Sau96I GGNCC 2 cut(s) 137, 721
ScrFI CCNGG 2 cut(s) 379, 738
SduI GDGCHC 2 cut(s) 50, 667
SexAI ACCWGGT 1 cut(s) 736
SfaNI GCATC 1 cut(s) 320
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 2 cut(s) 137, 721
SmiMI CAYNNNNRTG 2 cut(s) 639, 690
SpeI ACTAGT 1 cut(s) 533
SsiI CCGC 3 cut(s) 838, 863, 879
SspI AATATT 2 cut(s) 790, 858
SspMI CTAG 2 cut(s) 534, 895
StyD4I CCNGG 2 cut(s) 377, 736
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 2 cut(s) 387, 585
TaqI TCGA 4 cut(s) 227, 399, 585, 783
TatI WGTACW 1 cut(s) 757
TfiI GAWTC 1 cut(s) 707
Tru1I TTAA 5 cut(s) 174, 195, 243, 336, 542
Tru9I TTAA 5 cut(s) 174, 195, 243, 336, 542
TspDTI ATGAA 3 cut(s) 201, 561, 780
VneI GTGCAC 1 cut(s) 46
VpaK11BI GGWCC 2 cut(s) 137, 721
XapI RAATTY 3 cut(s) 188, 401, 767
XceI RCATGY 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 2 cut(s) 246, 563
XmiI GTMKAC 3 cut(s) 277, 552, 585
XspI CTAG 2 cut(s) 534, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.