Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Forward (+)

1855765 .. 1856340

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG027800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATATACTATGAAGATGTTAAGGACTTGCATGGATTTCTTACGGTCATTTTACCTAGTTTGAGGGACTTGTCAATAAGAAGACATGTTGAGAGGTGGATGACATTTTTGTCCGATAGTTGTTTACAAGTTACACCATATTCAACTCTAGTAGATGATTCAGATATGCATCCTCCCTATCATAATCTCCACCATGTTAGATTGATTGTCAATTATCCAAGCTCCTGGGACGTCGATGATGAACTCCAATTCTTGGCAAATATGCATAAACTATGGACGGACCTGAGCAAGTTCAATCCTGCCAATTTGTTAATAAGTGAAACTTTTGAAAATCATCTCGTGAATTGTTATTCTCAGTGGAACGAGTGCTTTACTACGGGCAAAAATATTAGTGGCTTAAACGAAGTCTATCAAACTGGTGTTCGTGAAGGGAATTACGTGGACAAGTCTACTGGGATACTATGCTTGCTAACCATTGTTATTTTGCCCACAATTGTGTCGAACACTACATGGAAAAAGTGCAAGAGCATAACATTAGACATCATTCTGAAGATGTTAGGCATCTTGACCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

22.08

Weight (kDa)

5.69

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
AatII	GACGTC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	253
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	144, 295, 329
AjnI	CCWGG	1 cut(s)	224
AleI	CACNNNNGTG	1 cut(s)	494
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	280
BauI	CACGAG	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	450
BfaI	CTAG	2 cut(s)	57, 149
BfuI	GTATCC	1 cut(s)	450
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	178, 570
BmuI	ACTGGG	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	421, 457
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	105, 169
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	275, 368
BseNI	ACTGG	2 cut(s)	421, 457
BslFI	GGGAC	2 cut(s)	80, 242
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmFI	GGGAC	2 cut(s)	80, 242
BspCNI	CTCAG	2 cut(s)	276, 367
BsrI	ACTGG	2 cut(s)	421, 457
BssECI	CCNNGG	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	2 cut(s)	284, 354
BstF5I	GGATG	2 cut(s)	105, 169
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	105, 169
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	4 cut(s)	32, 86, 194, 510
CviJI	RGCY	2 cut(s)	222, 396
CviKI_1	RGCY	2 cut(s)	222, 396
DdeI	CTNAG	2 cut(s)	284, 354
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	224
EcoT22I	ATGCAT	2 cut(s)	171, 267
FaeI	CATG	4 cut(s)	35, 89, 197, 513
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	2 cut(s)	80, 242
FatI	CATG	4 cut(s)	31, 85, 193, 509
FauNDI	CATATG	1 cut(s)	572
FblI	GTMKAC	1 cut(s)	449
FokI	GGATG	2 cut(s)	112, 156
FspBI	CTAG	2 cut(s)	57, 149
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	35, 89, 197, 513
HinfI	GANTC	1 cut(s)	158
Hpy166II	GTNNAC	3 cut(s)	125, 442, 450
Hpy188I	TCNGA	3 cut(s)	115, 163, 549
Hpy188III	TCNNGA	3 cut(s)	340, 425, 565
Hpy8I	GTNNAC	3 cut(s)	125, 442, 450
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	2 cut(s)	231, 438
HpyCH4V	TGCA	4 cut(s)	31, 169, 265, 522
HpyF3I	CTNAG	2 cut(s)	284, 354
HpySE526I	ACGT	2 cut(s)	231, 438
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	35, 89, 197, 513
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	6 cut(s)	211, 238, 296, 312, 402, 438
LweI	GCATC	2 cut(s)	178, 570
MaeI	CTAG	2 cut(s)	57, 149
MaeII	ACGT	2 cut(s)	231, 438
MaeIII	GTNAC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	26, 93, 562
MfeI	CAATTG	1 cut(s)	492
MluCI	AATT	6 cut(s)	211, 248, 304, 343, 433, 492
MnlI	CCTC	3 cut(s)	57, 87, 183
Mph1103I	ATGCAT	2 cut(s)	171, 267
MseI	TTAA	3 cut(s)	21, 311, 398
MslI	CAYNNNNRTG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	572
NlaIII	CATG	4 cut(s)	35, 89, 197, 513
NsiI	ATGCAT	2 cut(s)	171, 267
NspI	RCATGY	1 cut(s)	89
OliI	CACNNNNGTG	1 cut(s)	494
PciI	ACATGT	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	439
PscI	ACATGT	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	3 cut(s)	21, 311, 398
Sau96I	GGNCC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	6 cut(s)	58, 98, 224, 234, 285, 441
SfaNI	GCATC	2 cut(s)	178, 570
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	6 cut(s)	211, 248, 304, 343, 433, 492
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	2 cut(s)	57, 149
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	2 cut(s)	234, 441
TaqI	TCGA	2 cut(s)	234, 500
TasI	AATT	6 cut(s)	211, 248, 304, 343, 433, 492
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	3 cut(s)	21, 311, 398
Tru9I	TTAA	3 cut(s)	21, 311, 398
TscAI	CASTG	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	27, 255
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	280
XceI	RCATGY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	449
XspI	CTAG	2 cut(s)	57, 149
ZraI	GACGTC	1 cut(s)	232
Zsp2I	ATGCAT	2 cut(s)	171, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.