Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Forward (+)

5095207 .. 5097004

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTGGACGATATTCAAGAAGATCGGGAGGAACATAAAGTACTTGTCTTCAGAGGCTAAAGCACAGAGACCTCATGGCAATCTCCTCAAAGGCACAGGCATTACACCCGATCTTCAAGCTTTGTTTCTTAATTTGGGTGCTGATGATACAGATCCAATGCTATATAAGAAGGACGTTAAAGACTTGCATCAATTGTTATCATCTTTCAAACTTAAGAAGGTGACGACGGCTAAGCTGACGAAGGAACAGCAGATTATCACAGATTGTGTTGATAGGTGGATAAGCTTCTTGTCAGACACTTGTTTGCAAGATCCAGTTCCAAAAAAATGGACTATAGTTTTGGGAACAGCTATCGATCCTCCCTATCTAAATCACGACCATGTTCGATTGATTTTTAATTATCCAGCCTCCTGGAGCAGTACAGAAGAACTCCGATTCCTCGCAAACATGTATAAGTTGTGCTCGGGGGAAAAGTCCGCTACCAACTTGGCTCGAAATGCAGACTTTGAAAAGCATCTCATGGAGTGCAACTATCAAAATTGGGATGCTTGCATTACGAGTCCTTTATTATACAATGTCTATGACTTTGGGAGGAAAACGTTATACTTGGACCACACTGGCAGGCTTATCATCAACTCATTTGTTCTTTTTGCATACAATTGCATCAAGCACTACGACGGAACAGCCCAAAAATCCCATACACAAGAAGAAATCCTTGCTGAGTTACATAAACAATTTCCCAATTTTACCGAGGTTATCTATCAGGCCTTTTACAAAGCAGTAGCGAAAGGCTACAAACATTCCGAATATAGTATTGAGCAAATATTGACAGAAAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

32.39

Weight (kDa)

8.38

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	477
AclI	AACGTT	1 cut(s)	599
AclWI	GGATC	3 cut(s)	146, 305, 350
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	2 cut(s)	41, 421
AflII	CTTAAG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	4 cut(s)	16, 116, 208, 509
AjnI	CCWGG	1 cut(s)	410
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	4 cut(s)	119, 235, 285, 350
AluI	AGCT	4 cut(s)	119, 235, 285, 350
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	3 cut(s)	146, 305, 350
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	765
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
AspS9I	GGNCC	1 cut(s)	610
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	464
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	61
BfmI	CTRYAG	1 cut(s)	333
BfrI	CTTAAG	1 cut(s)	212
BlpI	GCTNAGC	1 cut(s)	231
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	412
BmsI	GCATC	4 cut(s)	196, 523, 535, 672
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	433
Bpu1102I	GCTNAGC	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	750
Bse1I	ACTGG	2 cut(s)	314, 622
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	412
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	2 cut(s)	314, 622
BseRI	GAGGAG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	767
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	463
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	767
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	5 cut(s)	21, 109, 151, 310, 355
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	767
BspCNI	CTCAG	1 cut(s)	712
BspDI	ATCGAT	1 cut(s)	354
BspPI	GGATC	3 cut(s)	146, 305, 350
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	314, 622
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	5 cut(s)	21, 109, 151, 310, 355
Bst2UI	CCWGG	1 cut(s)	412
BstAFI	CTTAAG	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	550, 623
BstDEI	CTNAG	2 cut(s)	231, 720
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	5 cut(s)	24, 112, 154, 313, 358
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	21, 109, 151, 310, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	151, 310
BstXI	CCANNNNNNTGG	2 cut(s)	327, 411
BstYI	RGATCY	2 cut(s)	151, 310
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	767
BsuTUI	ATCGAT	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	2 cut(s)	550, 623
Cfr13I	GGNCC	1 cut(s)	610
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	40, 420
CviAII	CATG	4 cut(s)	74, 380, 448, 520
CviQI	GTAC	2 cut(s)	40, 420
DdeI	CTNAG	2 cut(s)	231, 720
DpnI	GATC	5 cut(s)	23, 111, 153, 312, 357
DpnII	GATC	5 cut(s)	21, 109, 151, 310, 355
Eco147I	AGGCCT	1 cut(s)	767
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	410
FaeI	CATG	4 cut(s)	77, 383, 451, 523
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FatI	CATG	4 cut(s)	73, 379, 447, 519
FokI	GGATG	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	767
Hin1II	CATG	4 cut(s)	77, 383, 451, 523
HindIII	AAGCTT	2 cut(s)	117, 283
HinfI	GANTC	2 cut(s)	435, 559
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	52, 295, 434, 805
Hpy188III	TCNNGA	3 cut(s)	16, 25, 374
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	229, 680
HpyAV	CCTTC	3 cut(s)	163, 211, 235
HpyCH4IV	ACGT	2 cut(s)	174, 599
HpyCH4V	TGCA	7 cut(s)	187, 307, 500, 528, 552, 653, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	231, 720
HpySE526I	ACGT	2 cut(s)	174, 599
Hsp92II	CATG	4 cut(s)	77, 383, 451, 523
Kzo9I	GATC	5 cut(s)	21, 109, 151, 310, 355
LmnI	GCTCC	1 cut(s)	414
LpnPI	CCDG	8 cut(s)	81, 327, 397, 417, 424, 603, 607, 749
LweI	GCATC	4 cut(s)	196, 523, 535, 672
MaeII	ACGT	2 cut(s)	174, 599
MaeIII	GTNAC	2 cut(s)	220, 723
MalI	GATC	5 cut(s)	23, 111, 153, 312, 357
MboI	GATC	5 cut(s)	21, 109, 151, 310, 355
MboII	GAAGA	5 cut(s)	31, 39, 104, 437, 719
MfeI	CAATTG	2 cut(s)	191, 658
MflI	RGATCY	2 cut(s)	151, 310
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	7 cut(s)	130, 191, 397, 538, 658, 734, 742
MlyI	GAGTC	1 cut(s)	568
MnlI	CCTC	9 cut(s)	21, 46, 81, 95, 369, 418, 449, 585, 745
MseI	TTAA	4 cut(s)	129, 177, 213, 396
MslI	CAYNNNNRTG	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	412
MunI	CAATTG	2 cut(s)	191, 658
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	5 cut(s)	21, 109, 151, 310, 355
NlaIII	CATG	4 cut(s)	77, 383, 451, 523
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	767
PciI	ACATGT	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	435
PfoI	TCCNGGA	1 cut(s)	410
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
PscI	ACATGT	1 cut(s)	447
Psp1406I	AACGTT	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PspPI	GGNCC	1 cut(s)	610
PsrI	GAACNNNNNNTAC	2 cut(s)	23, 55
PsuI	RGATCY	2 cut(s)	151, 310
RsaI	GTAC	2 cut(s)	41, 421
RsaNI	GTAC	2 cut(s)	40, 420
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	4 cut(s)	129, 177, 213, 396
Sau3AI	GATC	5 cut(s)	21, 109, 151, 310, 355
Sau96I	GGNCC	1 cut(s)	610
ScaI	AGTACT	1 cut(s)	41
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	4 cut(s)	196, 523, 535, 672
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	7 cut(s)	130, 191, 397, 538, 658, 734, 742
SseBI	AGGCCT	1 cut(s)	767
SsiI	CCGC	1 cut(s)	477
SspI	AATATT	1 cut(s)	825
StuI	AGGCCT	1 cut(s)	767
StyD4I	CCNGG	1 cut(s)	410
TaiI	ACGT	2 cut(s)	177, 602
TaqI	TCGA	3 cut(s)	354, 385, 493
TasI	AATT	7 cut(s)	130, 191, 397, 538, 658, 734, 742
TatI	WGTACW	2 cut(s)	39, 419
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	4 cut(s)	129, 177, 213, 396
Tru9I	TTAA	4 cut(s)	129, 177, 213, 396
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	1 cut(s)	622
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	610
XceI	RCATGY	1 cut(s)	451
ZrmI	AGTACT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.