Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Reverse (-)

32961551 .. 32962439

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCAACGGAAATCCCTCTCTTAGCCTCCAAGAGAAATTAACGTTTCATCAACGTCGTGACAGATTTCATGATCAGTACACTATCTTATCCACTCCTTCACCATGTAGTAATCCAAATCTGGAGAATCTCCGATACATACGGTATCAACCCTACCAAGGACGAGACGGCTTCGGAACCGTTCAAGAATGCAAAAAGCACTCCGAAGCTGCTAGACACTGGGAGACTCAGAAGATGTACGACTCAGCAGTTCTCATACATCCCCAAGAATGTATCCGACACGAAAAAGGAAGGTATTTGCTGGTCTTCAATAAAGTTGTCACAGACTTCCAACACTGGAGAGAAGAACATGAACAAGGCAGAGTCACAGATGAGGAAATGTGGGAGATATTGAAGAAGATCGGGAATAATCTCATATACTTGTCAACTCAGTATCGACCGCATGGAAATTTTAAGGGAGGTGAGAGGAGCAGACTAACCCAGGCGAGAAGCAGCCAGCTTAGCCCAGCCCACACCACGTGGCTGACGTCAGCGCCCTGCCTCTGTTTCTTCGACGCGCCTGCTGCTTGCGTCTCTCCCACGGACGAACAAGCGCCAGCCCGTTGCGCGTGTCCAGCCATCTTTTGTCGCGACATGCGAGCTGCGTCTTCCCCACGACACGCGTCGTCACTTGCACGGCTTGACTCGTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

26.54

Weight (kDa)

8.57

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	530
AccII	CGCG	4 cut(s)	557, 608, 630, 662
AciI	CCGC	1 cut(s)	440
AclI	AACGTT	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	448
AcvI	CACGTG	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	519
AfaI	GTAC	2 cut(s)	80, 239
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	3 cut(s)	185, 310, 394
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	3 cut(s)	209, 499, 641
AluI	AGCT	3 cut(s)	209, 499, 641
Alw26I	GTCTC	3 cut(s)	159, 218, 577
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	209, 492, 563, 641
ApoI	RAATTY	1 cut(s)	448
AspLEI	GCGC	4 cut(s)	535, 559, 595, 608
AsuHPI	GGTGA	2 cut(s)	93, 473
BalI	TGGCCA	1 cut(s)	5
BbrPI	CACGTG	1 cut(s)	519
BbsI	GAAGAC	2 cut(s)	298, 639
BbvI	GCAGC	4 cut(s)	196, 504, 550, 628
BccI	CCATC	1 cut(s)	626
BceAI	ACGGC	2 cut(s)	184, 692
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciT130I	CCWGG	1 cut(s)	482
BciVI	GTATCC	1 cut(s)	284
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	3 cut(s)	159, 218, 577
BfaI	CTAG	1 cut(s)	213
BfoI	RGCGCY	2 cut(s)	536, 596
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	4 cut(s)	210, 493, 564, 642
BlpI	GCTNAGC	1 cut(s)	500
BlsI	GCNGC	4 cut(s)	211, 494, 565, 643
Bme1390I	CCNGG	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	482
BmrI	ACTGGG	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	229
BoxI	GACNNNNGTC	1 cut(s)	661
BpiI	GAAGAC	2 cut(s)	298, 639
BpmI	CTGGAG	2 cut(s)	143, 358
Bpu1102I	GCTNAGC	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	3 cut(s)	157, 480, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	224, 341
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	3 cut(s)	157, 480, 579
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	3 cut(s)	242, 258, 443
BseNI	ACTGG	2 cut(s)	224, 341
BseRI	GAGGAG	1 cut(s)	481
BseXI	GCAGC	4 cut(s)	196, 504, 550, 628
BseYI	CCCAGC	1 cut(s)	505
Bsh1236I	CGCG	4 cut(s)	557, 608, 630, 662
Bsh1285I	CGRYCG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	3 cut(s)	159, 218, 577
BsmBI	CGTCTC	2 cut(s)	159, 577
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	73, 399
Bsp1720I	GCTNAGC	1 cut(s)	500
Bsp68I	TCGCGA	1 cut(s)	630
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	241, 257, 442
BspFNI	CGCG	4 cut(s)	557, 608, 630, 662
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	224, 341
BssECI	CCNNGG	3 cut(s)	157, 480, 579
BssMI	GATC	2 cut(s)	73, 399
BssNI	GRCGYC	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	144, 181
BstACI	GRCGYC	1 cut(s)	527
BstBAI	YACGTR	1 cut(s)	519
BstC8I	GCNNGC	5 cut(s)	497, 561, 568, 597, 639
BstDEI	CTNAG	5 cut(s)	23, 228, 244, 429, 500
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	4 cut(s)	557, 608, 630, 662
BstH2I	RGCGCY	2 cut(s)	536, 596
BstHHI	GCGC	4 cut(s)	535, 559, 595, 608
BstKTI	GATC	2 cut(s)	76, 402
BstMAI	GTCTC	3 cut(s)	159, 218, 577
BstMBI	GATC	2 cut(s)	73, 399
BstMCI	CGRYCG	1 cut(s)	440
BstMWI	GCNNNNNNNGC	4 cut(s)	501, 563, 605, 614
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	637
BstPAI	GACNNNNGTC	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	480
BstUI	CGCG	4 cut(s)	557, 608, 630, 662
BstV1I	GCAGC	4 cut(s)	196, 504, 550, 628
BstV2I	GAAGAC	2 cut(s)	298, 639
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	217, 334
BtuMI	TCGCGA	1 cut(s)	630
Cac8I	GCNNGC	5 cut(s)	497, 561, 568, 597, 639
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	4 cut(s)	535, 559, 595, 608
CseI	GACGC	4 cut(s)	559, 563, 633, 651
Csp6I	GTAC	2 cut(s)	79, 238
CviAII	CATG	5 cut(s)	71, 105, 350, 443, 634
CviQI	GTAC	2 cut(s)	79, 238
DdeI	CTNAG	5 cut(s)	23, 228, 244, 429, 500
DpnI	GATC	2 cut(s)	75, 401
DpnII	GATC	2 cut(s)	73, 399
DraIII	CACNNNGTG	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	157
Eco72I	CACGTG	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	2 cut(s)	159, 577
FaeI	CATG	5 cut(s)	74, 108, 353, 446, 637
FaiI	YATR	9 cut(s)	72, 106, 140, 257, 351, 416, 418, 444, 635
FatI	CATG	5 cut(s)	70, 104, 349, 442, 633
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	210, 493, 564, 642
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	210, 493, 564, 642
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	4 cut(s)	534, 558, 594, 607
GluI	GCNGC	4 cut(s)	210, 493, 564, 642
GsaI	CCCAGC	1 cut(s)	509
GsuI	CTGGAG	2 cut(s)	143, 358
HaeII	RGCGCY	2 cut(s)	536, 596
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	4 cut(s)	559, 563, 633, 651
HhaI	GCGC	4 cut(s)	535, 559, 595, 608
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	5 cut(s)	74, 108, 353, 446, 637
Hin6I	GCGC	4 cut(s)	533, 557, 593, 606
HinP1I	GCGC	4 cut(s)	533, 557, 593, 606
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	5 cut(s)	127, 226, 242, 363, 683
HphI	GGTGA	2 cut(s)	93, 473
Hpy166II	GTNNAC	2 cut(s)	81, 426
Hpy188I	TCNGA	5 cut(s)	134, 176, 205, 231, 278
Hpy188III	TCNNGA	6 cut(s)	59, 71, 122, 185, 403, 629
Hpy8I	GTNNAC	2 cut(s)	81, 426
Hpy99I	CGWCG	3 cut(s)	60, 557, 667
HpyAV	CCTTC	2 cut(s)	108, 285
HpyCH4III	ACNGT	2 cut(s)	144, 181
HpyCH4IV	ACGT	4 cut(s)	44, 55, 518, 527
HpyCH4V	TGCA	2 cut(s)	192, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	501, 563, 605, 614
HpyF3I	CTNAG	5 cut(s)	23, 228, 244, 429, 500
HpySE526I	ACGT	4 cut(s)	44, 55, 518, 527
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	5 cut(s)	74, 108, 353, 446, 637
HspAI	GCGC	4 cut(s)	533, 557, 593, 606
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	73, 399
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	4 cut(s)	196, 504, 550, 628
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	4 cut(s)	44, 55, 518, 527
MaeIII	GTNAC	4 cut(s)	59, 319, 364, 666
MalI	GATC	2 cut(s)	75, 401
MboI	GATC	2 cut(s)	73, 399
MboII	GAAGA	7 cut(s)	244, 298, 356, 406, 409, 541, 639
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	38, 448
MluI	ACGCGT	1 cut(s)	660
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	220, 236, 372, 677
MmeI	TCCRAC	2 cut(s)	301, 355
MnlI	CCTC	6 cut(s)	28, 38, 367, 452, 459, 551
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	41, 453
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	4 cut(s)	557, 608, 630, 662
MwoI	GCNNNNNNNGC	4 cut(s)	501, 563, 605, 614
NdeII	GATC	2 cut(s)	73, 399
NlaIII	CATG	5 cut(s)	74, 108, 353, 446, 637
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	4 cut(s)	59, 319, 364, 666
NruI	TCGCGA	1 cut(s)	630
NspI	RCATGY	1 cut(s)	637
PagI	TCATGA	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	2 cut(s)	524, 634
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	4 cut(s)	211, 494, 565, 643
PleI	GAGTC	4 cut(s)	220, 236, 371, 677
PmaCI	CACGTG	1 cut(s)	519
PmlI	CACGTG	1 cut(s)	519
PpsI	GAGTC	4 cut(s)	220, 236, 371, 677
Ppu21I	YACGTR	1 cut(s)	519
PshAI	GACNNNNGTC	1 cut(s)	661
Psp1406I	AACGTT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	480
PspCI	CACGTG	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	178
RruI	TCGCGA	1 cut(s)	630
RsaI	GTAC	2 cut(s)	80, 239
RsaNI	GTAC	2 cut(s)	79, 238
SaqAI	TTAA	2 cut(s)	41, 453
SatI	GCNGC	4 cut(s)	210, 493, 564, 642
Sau3AI	GATC	2 cut(s)	73, 399
SchI	GAGTC	4 cut(s)	220, 236, 372, 677
ScrFI	CCNGG	1 cut(s)	482
SetI	ASST	9 cut(s)	47, 58, 211, 296, 463, 501, 521, 530, 643
Sse9I	AATT	2 cut(s)	38, 448
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	144, 181
TaiI	ACGT	4 cut(s)	47, 58, 521, 530
TaqI	TCGA	2 cut(s)	436, 552
TasI	AATT	2 cut(s)	38, 448
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	41, 453
Tru9I	TTAA	2 cut(s)	41, 453
TscAI	CASTG	2 cut(s)	224, 341
TseFI	GTSAC	4 cut(s)	59, 319, 364, 666
TseI	GCWGC	4 cut(s)	209, 492, 563, 641
Tsp45I	GTSAC	4 cut(s)	59, 319, 364, 666
TspDTI	ATGAA	3 cut(s)	38, 59, 366
TspGWI	ACGGA	2 cut(s)	24, 596
TspRI	CASTG	2 cut(s)	224, 341
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	1 cut(s)	637
XspI	CTAG	1 cut(s)	213
ZraI	GACGTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.