Rmu_co8267141.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8267141.1
OG0008103
Physical Location & Seq
Reverse (-)
81 .. 803
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8267141.1_g000001.1.cds

Sequence Viewer

Length: 723 bp
atgtgggaggtcctgaagaagactgagaaagcaatgagatatttatcggtggaatcacactcacgtcgatcacatggaaatctcttgagaggcatcggtatagcagcggatcttaatgtatacttcttcaacttcggcgctgataaaaaaggatacaatactgatatccaagtgcttgatgatattctcacatccattgagcctaagttggtggatcctacaattcaacattgtgtcactcggtggaagtcctttctctctatggcttgttcactgtctcctcgtgctattacgccacctctttttcgtccctttgactctaaccatgtcagagttattcttcattatccggcatcttgggacgatgaagagaaacttcggttcttggcaaacattcataaattatgcacggacaagtgcaaccggcataattccaatttgatgaatgatatcacatttgatgctgagatggtgaaaaaatattctaactgggggaatctcataagtgccacaactaatgccttatctcaagtctaccaatttggttgccgccaaggaaattatttgagaactgatctagcgggaaacagggtcttatgggaggcatcagttgttgtgtttgctcacaatagtgttaagcactattctgagagggcgcaatggcataacaacaggctattaaacaatccttcttttacatatatggttagtttccttcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.76

Weight (kDa)

9.07

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 120, 534
AciI CCGC 3 cut(s) 107, 550, 581
AclWI GGATC 3 cut(s) 117, 209, 222
AcuI CTGAAG 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 243
AgsI TTSAA 2 cut(s) 130, 227
AjiI CACGTC 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 630
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 3 cut(s) 117, 209, 222
ApeKI GCWGC 1 cut(s) 104
AspLEI GCGC 2 cut(s) 140, 658
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 484
AvaII GGWCC 1 cut(s) 10
BamHI GGATCC 1 cut(s) 214
BauI CACGAG 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 463
BciVI GTATCC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 578
BfoI RGCGCY 1 cut(s) 141
BfuI GTATCC 1 cut(s) 146
BisI GCNGC 2 cut(s) 105, 550
BlsI GCNGC 2 cut(s) 106, 551
Bme18I GGWCC 1 cut(s) 10
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 4 cut(s) 102, 362, 451, 614
BmuI ACTGGG 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 26
BpuEI CTTGAG 2 cut(s) 106, 513
BsaBI GATNNNNATC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 553
Bse118I RCCGGY 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 2 cut(s) 39, 665
Bse8I GATNNNNATC 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 1 cut(s) 191
BseJI GATNNNNATC 1 cut(s) 43
BseMI GCAATG 2 cut(s) 39, 665
BseMII CTCAG 3 cut(s) 15, 456, 639
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 116
BsiSI CCGG 2 cut(s) 350, 424
BslFI GGGAC 2 cut(s) 294, 374
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 2 cut(s) 294, 374
Bsp143I GATC 4 cut(s) 68, 109, 214, 574
BspACI CCGC 3 cut(s) 107, 550, 581
BspCNI CTCAG 3 cut(s) 16, 457, 640
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 3 cut(s) 117, 209, 222
BsrDI GCAATG 2 cut(s) 39, 665
BsrFI RCCGGY 1 cut(s) 423
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 423
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 4 cut(s) 68, 109, 214, 574
BssNAI GTATAC 1 cut(s) 121
BssSI CACGAG 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 553
Bst1107I GTATAC 1 cut(s) 121
Bst2BI CACGAG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 4 cut(s) 24, 204, 465, 648
BstF5I GGATG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 658
BstKTI GATC 4 cut(s) 71, 112, 217, 577
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 4 cut(s) 68, 109, 214, 574
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 109, 214
BstYI RGATCY 2 cut(s) 109, 214
BstZ17I GTATAC 1 cut(s) 121
BsuI GTATCC 1 cut(s) 146
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 272
CfoI GCGC 2 cut(s) 140, 658
Cfr10I RCCGGY 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 10
CviAII CATG 2 cut(s) 74, 326
CviJI RGCY 3 cut(s) 202, 266, 676
CviKI_1 RGCY 3 cut(s) 202, 266, 676
DdeI CTNAG 4 cut(s) 24, 204, 465, 648
DpnI GATC 4 cut(s) 70, 111, 216, 576
DpnII GATC 4 cut(s) 68, 109, 214, 574
DraIII CACNNNGTG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 553
Eco32I GATATC 2 cut(s) 166, 451
Eco47I GGWCC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 10
EcoRV GATATC 2 cut(s) 166, 451
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 2 cut(s) 77, 329
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FaqI GGGAC 2 cut(s) 294, 374
FatI CATG 2 cut(s) 73, 325
FauI CCCGC 1 cut(s) 574
FblI GTMKAC 2 cut(s) 120, 534
Fnu4HI GCNGC 2 cut(s) 105, 550
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 105, 550
FspBI CTAG 1 cut(s) 578
GlaI GCGC 2 cut(s) 139, 657
GluI GCNGC 2 cut(s) 105, 550
HaeII RGCGCY 1 cut(s) 141
HapII CCGG 2 cut(s) 350, 424
HhaI GCGC 2 cut(s) 140, 658
Hin1II CATG 2 cut(s) 77, 329
Hin6I GCGC 2 cut(s) 138, 656
HinP1I GCGC 2 cut(s) 138, 656
HinfI GANTC 3 cut(s) 53, 317, 496
HpaII CCGG 2 cut(s) 350, 424
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 3 cut(s) 121, 272, 535
Hpy188I TCNGA 2 cut(s) 332, 649
Hpy188III TCNNGA 2 cut(s) 13, 85
Hpy8I GTNNAC 3 cut(s) 121, 272, 535
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 699
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 408, 420
HpyF3I CTNAG 4 cut(s) 24, 204, 465, 648
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 2 cut(s) 77, 329
HspAI GCGC 2 cut(s) 138, 656
Kzo9I GATC 4 cut(s) 68, 109, 214, 574
LpnPI CCDG 6 cut(s) 26, 363, 437, 475, 574, 658
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 4 cut(s) 102, 362, 451, 614
MaeI CTAG 1 cut(s) 578
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 235
MalI GATC 4 cut(s) 70, 111, 216, 576
MboI GATC 4 cut(s) 68, 109, 214, 574
MboII GAAGA 5 cut(s) 28, 31, 118, 332, 380
MflI RGATCY 2 cut(s) 109, 214
MluCI AATT 6 cut(s) 222, 401, 430, 436, 539, 559
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 5 cut(s) 83, 291, 309, 595, 645
MseI TTAA 3 cut(s) 114, 636, 680
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 2 cut(s) 350, 424
NdeII GATC 4 cut(s) 68, 109, 214, 574
NlaIII CATG 2 cut(s) 77, 329
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 630
PfeI GAWTC 2 cut(s) 53, 496
PkrI GCNGC 2 cut(s) 106, 551
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 10
PspPPI RGGWCCY 1 cut(s) 10
PsuI RGATCY 2 cut(s) 109, 214
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 3 cut(s) 114, 636, 680
SatI GCNGC 2 cut(s) 105, 550
Sau3AI GATC 4 cut(s) 68, 109, 214, 574
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 1 cut(s) 311
SetI ASST 3 cut(s) 12, 67, 301
SfaNI GCATC 4 cut(s) 102, 362, 451, 614
SinI GGWCC 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 85, 528
SmoI CTYRAG 2 cut(s) 85, 528
Sse9I AATT 6 cut(s) 222, 401, 430, 436, 539, 559
SsiI CCGC 3 cut(s) 107, 550, 581
SspI AATATT 1 cut(s) 482
SspMI CTAG 1 cut(s) 578
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 67
TasI AATT 6 cut(s) 222, 401, 430, 436, 539, 559
TauI GCSGC 1 cut(s) 552
TfiI GAWTC 2 cut(s) 53, 496
Tru1I TTAA 3 cut(s) 114, 636, 680
Tru9I TTAA 3 cut(s) 114, 636, 680
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 5 cut(s) 332, 381, 386, 458, 707
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 10
XmiI GTMKAC 2 cut(s) 120, 534
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.