Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Forward (+)

1218576 .. 1223025

Gene Structure 4450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02270.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGACGTTAATCTTGAAGGCCATGTTCGATACGTCATGTATGAATTCTTCCCAGGGCAAGGTACCTTCACAACCGCTCAAGAGTTTGAAAATGTCGATGATGCTAAGAGACTACGATGTTCAGAACAGCCATGACTCAAGTTATCTCATGCCCATCGACCTATGTGAGAAACACGAAGACGAGCATGTTCTGATCTTCCCAAAACTTATGAGGCCGTTTGGTATCTGGGTGAAAGAACATGCTGAAGGTGAAGTTACAGACGCCGATATGTGGGTGTTACTGAAGAAGATTGGACAAAGCATGAGGTACTTGTCGTCGAAACGAGCTCACGGCAATCTCCGTAGAGGCATAGGAGTAACAGCGCAGGTTGGAAGTTACTTTTTTAATCTGGGTGATGCTAGACACTCTGGGAGGTACTGCAAAGACTTCAAGGAGTTGCATCGTTTGCTTAGAAGGATTTTGCCTAGCTTGGCGGACCCTTCCATAAAAAGAAAGGTTGAGATGTGGGCTACATTTCTGTCAGAAAGTTGTTTGCAGGATTCTGCCTGTCGTAATCCGAACCATGTTAGGTTGATAGCGAATTATCCGAGCTCCTGTGACATTGATGAGCACCTCCAGTTCTTGGCCAATATGAATAGCCTATGCTCAATTAAGTACATGGAAGGCAATTTGTTAAGAAACAGAGCTTTTAAAAAACATCTCATGGGTTTTTATTCTCAGTGGAACCAATGCTTTATTTCTGGTCAAAATACTGGAGGTTTAAACTTGGTGTATCAACACGGTCGTCGTCGAGGAAAGTATGTGGACAGGTCTGGGATACTATGCGTGCCGAGCATTGTTATATTTGCCCAGAGTGCTATTGAACGCTACATGCAGAGGGCAGAAAAATATAACATTAAACACAAATCAGAAAATCCTCAGCACCCTGACCATATCAACCCATATCTTCTTTCCAGTGAAATCCTTGCCGAATTGGAGATAGAGTTTCCTCATTTGATCGAGAACATCTATGGAGCATATTACAAAGCTGTAGCAAAGGGCTATAAACATACCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

40.59

Weight (kDa)

9.13

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
Acc65I	GGTACC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	61
AccB7I	CCANNNNNTGG	1 cut(s)	622
AccBSI	CCGCTC	1 cut(s)	76
AciI	CCGC	2 cut(s)	74, 473
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	2 cut(s)	264, 302
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	4 cut(s)	63, 308, 416, 656
AfiI	CCNNNNNNNGG	3 cut(s)	58, 270, 622
AgsI	TTSAA	4 cut(s)	16, 88, 430, 863
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	6 cut(s)	326, 468, 591, 686, 1028, 1056
AluI	AGCT	6 cut(s)	326, 468, 591, 686, 1028, 1056
Alw21I	GWGCWC	3 cut(s)	328, 593, 612
Alw26I	GTCTC	1 cut(s)	102
AoxI	GGCC	3 cut(s)	18, 212, 624
ApoI	RAATTY	1 cut(s)	43
Asp718I	GGTACC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	3 cut(s)	241, 260, 404
AvaII	GGWCC	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	61
BanII	GRGCYC	2 cut(s)	328, 593
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	3 cut(s)	328, 593, 612
BbvCI	CCTCAGC	1 cut(s)	918
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	2 cut(s)	199, 346
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	810
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	3 cut(s)	399, 465, 1057
BfmI	CTRYAG	1 cut(s)	1029
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	810
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	3 cut(s)	63, 477, 725
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	3 cut(s)	90, 385, 448
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	2 cut(s)	599, 774
Bpu10I	CCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	2 cut(s)	62, 121
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	51, 52
BsaXI	ACNNNNNCTCC	2 cut(s)	968, 998
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 270, 622
Bse1I	ACTGG	3 cut(s)	616, 757, 954
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	51, 52
BseLI	CCNNNNNNNGG	3 cut(s)	58, 270, 622
BseMII	CTCAG	2 cut(s)	731, 932
BseNI	ACTGG	3 cut(s)	616, 757, 954
Bsh1285I	CGRYCG	1 cut(s)	784
BshFI	GGCC	3 cut(s)	20, 214, 626
BshNI	GGYRCC	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	784
BsiHKAI	GWGCWC	3 cut(s)	328, 593, 612
BslI	CCNNNNNNNGG	3 cut(s)	58, 270, 622
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	20, 214, 626
Bsp1286I	GDGCHC	3 cut(s)	328, 593, 612
Bsp143I	GATC	2 cut(s)	192, 996
BspACI	CCGC	2 cut(s)	74, 473
BspANI	GGCC	3 cut(s)	20, 214, 626
BspCNI	CTCAG	2 cut(s)	730, 931
BspLI	GGNNCC	3 cut(s)	63, 477, 725
BspMI	ACCTGC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	616, 757, 954
BssECI	CCNNGG	2 cut(s)	51, 52
BssMI	GATC	2 cut(s)	192, 996
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	782
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	827
BstDEI	CTNAG	4 cut(s)	104, 449, 717, 918
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	2 cut(s)	195, 999
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	192, 996
BstMCI	CGRYCG	1 cut(s)	784
BstMWI	GCNNNNNNNGC	3 cut(s)	445, 831, 854
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	3 cut(s)	188, 242, 874
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	1029
BstV2I	GAAGAC	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	20, 214, 626
BtsIMutI	CAGTG	2 cut(s)	725, 961
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	827
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	4 cut(s)	62, 307, 415, 655
CviQI	GTAC	4 cut(s)	62, 307, 415, 655
DdeI	CTNAG	4 cut(s)	104, 449, 717, 918
DpnI	GATC	2 cut(s)	194, 998
DpnII	GATC	2 cut(s)	192, 996
DraI	TTTAAA	2 cut(s)	691, 762
EaeI	YGGCCR	1 cut(s)	624
EciI	GGCGGA	1 cut(s)	488
Ecl136II	GAGCTC	2 cut(s)	326, 591
Eco24I	GRGCYC	2 cut(s)	328, 593
Eco47I	GGWCC	1 cut(s)	475
Eco53kI	GAGCTC	2 cut(s)	326, 591
Eco57I	CTGAAG	2 cut(s)	264, 302
EcoICRI	GAGCTC	2 cut(s)	326, 591
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	328, 593
FriOI	GRGCYC	2 cut(s)	328, 593
FspBI	CTAG	3 cut(s)	399, 465, 1057
GlaI	GCGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	599, 774
HaeIII	GGCC	3 cut(s)	20, 214, 626
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	261
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HinfI	GANTC	2 cut(s)	134, 539
HphI	GGTGA	3 cut(s)	241, 260, 404
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	6 cut(s)	123, 192, 523, 558, 588, 910
Hpy188III	TCNNGA	3 cut(s)	13, 79, 1000
Hpy8I	GTNNAC	1 cut(s)	805
Hpy99I	CGWCG	3 cut(s)	319, 789, 792
HpyAV	CCTTC	6 cut(s)	10, 75, 239, 447, 489, 656
HpyCH4III	ACNGT	1 cut(s)	782
HpyCH4IV	ACGT	2 cut(s)	5, 32
HpyCH4V	TGCA	4 cut(s)	420, 439, 535, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	445, 831, 854
HpyF3I	CTNAG	4 cut(s)	104, 449, 717, 918
HpySE526I	ACGT	2 cut(s)	5, 32
Hsp92I	GRCGYC	1 cut(s)	261
HspAI	GCGC	1 cut(s)	362
KpnI	GGTACC	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	192, 996
LmnI	GCTCC	2 cut(s)	596, 1013
LweI	GCATC	3 cut(s)	90, 385, 448
MaeI	CTAG	3 cut(s)	399, 465, 1057
MaeII	ACGT	2 cut(s)	5, 32
MaeIII	GTNAC	5 cut(s)	253, 276, 355, 374, 596
MalI	GATC	2 cut(s)	194, 998
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	2 cut(s)	192, 996
MboII	GAAGA	6 cut(s)	39, 187, 188, 295, 298, 938
MhlI	GDGCHC	3 cut(s)	328, 593, 612
MlsI	TGGCCA	1 cut(s)	626
MluCI	AATT	5 cut(s)	43, 580, 648, 667, 971
MluNI	TGGCCA	1 cut(s)	626
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	349
Mox20I	TGGCCA	1 cut(s)	626
MscI	TGGCCA	1 cut(s)	626
MseI	TTAA	7 cut(s)	8, 384, 651, 674, 690, 761, 897
Msp20I	TGGCCA	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	53
MssI	GTTTAAAC	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	445, 831, 854
NdeII	GATC	2 cut(s)	192, 996
NlaIV	GGNNCC	3 cut(s)	63, 477, 725
NmeAIII	GCCGAG	1 cut(s)	855
NmuCI	GTSAC	1 cut(s)	596
NspI	RCATGY	3 cut(s)	188, 242, 874
PasI	CCCWGGG	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	622
PleI	GAGTC	1 cut(s)	128
PmeI	GTTTAAAC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	128
Psp124BI	GAGCTC	2 cut(s)	328, 593
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	63, 477, 725
PspPI	GGNCC	1 cut(s)	475
RsaI	GTAC	4 cut(s)	63, 308, 416, 656
RsaNI	GTAC	4 cut(s)	62, 307, 415, 655
SacI	GAGCTC	2 cut(s)	328, 593
SaqAI	TTAA	7 cut(s)	8, 384, 651, 674, 690, 761, 897
Sau3AI	GATC	2 cut(s)	192, 996
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	3 cut(s)	328, 593, 612
SfaNI	GCATC	3 cut(s)	90, 385, 448
SfcI	CTRYAG	1 cut(s)	1029
SinI	GGWCC	1 cut(s)	475
SmlI	CTYRAG	2 cut(s)	77, 136
SmoI	CTYRAG	2 cut(s)	77, 136
Sse9I	AATT	5 cut(s)	43, 580, 648, 667, 971
SsiI	CCGC	2 cut(s)	74, 473
SspMI	CTAG	3 cut(s)	399, 465, 1057
SstI	GAGCTC	2 cut(s)	328, 593
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	782
TaiI	ACGT	2 cut(s)	8, 35
TaqI	TCGA	6 cut(s)	27, 95, 156, 317, 790, 999
TasI	AATT	5 cut(s)	43, 580, 648, 667, 971
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	7 cut(s)	8, 384, 651, 674, 690, 761, 897
Tru9I	TTAA	7 cut(s)	8, 384, 651, 674, 690, 761, 897
TscAI	CASTG	2 cut(s)	725, 961
TseFI	GTSAC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	56, 647
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	2 cut(s)	725, 961
Van91I	CCANNNNNTGG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	3 cut(s)	188, 242, 874
XspI	CTAG	3 cut(s)	399, 465, 1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.