FvH4_1g02452

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008103
Physical Location & Seq
Forward (+)
1367732 .. 1369057
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02452.t1

Sequence Viewer

Length: 1224 bp
ATGGCTTCAAATCCTTCATCTAGACTCCGAGACGCTGTAGCCAATTGGCAAATACCTGAGCCACTTATGGTCGAAAAGCGGTACTATTTCACTCACGTACCTCCACCAATGATTGACAGGACTCTGGAGAAGCTTGGATATATCAAGCATGAGCCGTTTGTGGGAAAATTCGAGTACGCAACTATTCAAGAATATGCACAGCTAGCCGATGCAGAAATACAGTGGGATACTCAGAAGAGGTATGATTCGAGATTTCTCATACACCCGAAACGTTGTGTGAGATATTTGGACAAGTACGCCCTGATTTTCCATACAGTGATGAGAGAGTTCAGGTACTGGGTAAAAGCTCATGGTTCAGGCATGGTCACGGATGCGGACATGTGGAAAGTATTCACAGATATTGCGATGAACATGAAGTACTTGTCTAAAGAAGGACGTCCCCATGGAAATCTCCAAGAAGGGATTGGCGTAACAACCGAACCTAAAGCTTTGTTTTTCAATTTAGGCACTGATACAGACACACAGAGATTTGGTGACGATGTTGTAGCCTTGCACAAGTTTCTTAAAGACACCAAAACCAACTGGAAGGTAGACTTGGAAAAAGGAGAACATGTGAGGAGGTGGGAATCATTCTTGAACAAGAGCCGTTTACAACTTGATCCAGATTCTACTCCAGCACCGCATTCACATATCTATCCTCTCTATGGTCCCAACCATGTGAAACTGGTTTTCTACTATCCAATCTCCTCAAACAGCGACGAGAAGCTCCAACTCTTGGAAAATCTGCATAAACTGTGTACCTCTAGAGACCAGTTCCGTGTCACTTTGAAGAAGAATCCAGCTTTTGTGAAAGCTCTCGCTCAATATAAAGGTTGGCCCTCAGAGCTGAAGGGTAGATCGATCGCCCTAGATAAAGTGTACAACGATGGTTTCGAACTAGGAATTTACACAAAGCAAACAGGAAATATAACTGTCGTATGCGAGGCTTCTATTGTGACATTTGCGCACAATTGCGTAAGACATCGCCGTGTCGCAGCGCAAGTCTATAACAATGATCATGGTGCACGTCTGCCGAGGCTTGACCCGAGTGAAGTCCTTGCTGAGTTATATTCAATATTTCCCTATTTAATTGAAAACATCTACGAAGCTTTTCACTTGGCTTTAGCATCAGGCTACTACCATCCAGATTTCAGTGTTGCCCAAATATTGACTGGATCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

408

Amino Acids

47.11

Weight (kDa)

8.59

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 439
Acc16I TGCGCA 1 cut(s) 1005
AccB7I CCANNNNNTGG 1 cut(s) 775
AccI GTMKAC 1 cut(s) 591
AciI CCGC 3 cut(s) 79, 374, 680
AclI AACGTT 1 cut(s) 271
AclWI GGATC 2 cut(s) 653, 1222
AcsI RAATTY 2 cut(s) 167, 942
AcuI CTGAAG 1 cut(s) 908
AcyI GRCGYC 1 cut(s) 436
AfaI GTAC 8 cut(s) 83, 99, 176, 296, 335, 419, 799, 920
AfiI CCNNNNNNNGG 3 cut(s) 161, 704, 775
AflIII ACRYGT 2 cut(s) 378, 610
AgsI TTSAA 7 cut(s) 9, 188, 499, 637, 829, 1113, 1133
AjiI CACGTC 1 cut(s) 1067
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AluBI AGCT 9 cut(s) 133, 202, 347, 488, 766, 842, 854, 886, 1148
AluI AGCT 9 cut(s) 133, 202, 347, 488, 766, 842, 854, 886, 1148
Alw21I GWGCWC 1 cut(s) 1066
Alw26I GTCTC 2 cut(s) 24, 801
Alw44I GTGCAC 1 cut(s) 1062
AlwI GGATC 2 cut(s) 653, 1222
AlwNI CAGNNNCTG 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 1084
AoxI GGCC 1 cut(s) 875
ApaLI GTGCAC 1 cut(s) 1062
ApeKI GCWGC 1 cut(s) 1034
ApoI RAATTY 2 cut(s) 167, 942
Asp700I GAANNNNTTC 2 cut(s) 389, 1149
AspLEI GCGC 2 cut(s) 1006, 1039
AspS9I GGNCC 2 cut(s) 707, 876
AsuHPI GGTGA 1 cut(s) 545
AsuII TTCGAA 1 cut(s) 933
AsuNHI GCTAGC 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 1084
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 1066
BaeI ACNNNNGTAYC 2 cut(s) 81, 114
Bbv12I GWGCWC 1 cut(s) 1066
BbvI GCAGC 1 cut(s) 1046
BccI CCATC 2 cut(s) 920, 1188
BceAI ACGGC 3 cut(s) 139, 630, 1011
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 1054
BcoDI GTCTC 2 cut(s) 24, 801
BfaI CTAG 5 cut(s) 21, 203, 804, 908, 938
BfmI CTRYAG 1 cut(s) 36
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 1 cut(s) 1035
BlsI GCNGC 1 cut(s) 1036
BmcAI AGTACT 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 707
BmeT110I CYCGRG 1 cut(s) 1084
BmgBI CACGTC 1 cut(s) 1067
BmgT120I GGNCC 2 cut(s) 707, 876
BmiI GGNNCC 1 cut(s) 709
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 3 cut(s) 199, 361, 1175
BmtI GCTAGC 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 346
BpmI CTGGAG 2 cut(s) 146, 657
Bpu10I CCTNAGC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 933
Bsa29I ATCGAT 1 cut(s) 899
BsaAI YACGTR 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 436
BsaI GGTCTC 1 cut(s) 801
BsaJI CCNNGG 2 cut(s) 442, 1073
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 704, 775
Bse1I ACTGG 5 cut(s) 341, 587, 729, 811, 1216
BseCI ATCGAT 1 cut(s) 899
BseDI CCNNGG 2 cut(s) 442, 1073
BseGI GGATG 2 cut(s) 376, 1180
BseLI CCNNNNNNNGG 3 cut(s) 161, 704, 775
BseMII CTCAG 4 cut(s) 48, 245, 894, 1092
BseNI ACTGG 5 cut(s) 341, 587, 729, 811, 1216
BseRI GAGGAG 2 cut(s) 631, 736
BseSI GKGCMC 1 cut(s) 1066
BseXI GCAGC 1 cut(s) 1046
Bsh1285I CGRYCG 1 cut(s) 903
BshFI GGCC 1 cut(s) 877
BshVI ATCGAT 1 cut(s) 899
BsiEI CGRYCG 1 cut(s) 903
BsiHKAI GWGCWC 1 cut(s) 1066
BsiHKCI CYCGRG 1 cut(s) 1084
BslFI GGGAC 2 cut(s) 423, 693
BslI CCNNNNNNNGG 3 cut(s) 161, 704, 775
BsmAI GTCTC 2 cut(s) 24, 801
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 2 cut(s) 423, 693
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 1 cut(s) 877
Bso31I GGTCTC 1 cut(s) 801
BsoBI CYCGRG 1 cut(s) 1084
Bsp119I TTCGAA 1 cut(s) 933
Bsp1286I GDGCHC 1 cut(s) 1066
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 5 cut(s) 658, 896, 900, 1054, 1214
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 3 cut(s) 79, 374, 680
BspANI GGCC 1 cut(s) 877
BspCNI CTCAG 4 cut(s) 49, 244, 893, 1093
BspDI ATCGAT 1 cut(s) 899
BspLI GGNNCC 1 cut(s) 709
BspOI GCTAGC 1 cut(s) 206
BspPI GGATC 2 cut(s) 653, 1222
BspT104I TTCGAA 1 cut(s) 933
BspTNI GGTCTC 1 cut(s) 801
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 5 cut(s) 341, 587, 729, 811, 1216
BssECI CCNNGG 2 cut(s) 442, 1073
BssMI GATC 5 cut(s) 658, 896, 900, 1054, 1214
BssNI GRCGYC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 442
Bst4CI ACNGT 4 cut(s) 222, 316, 795, 973
Bst6I CTCTTC 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 436
BstAUI TGTACA 1 cut(s) 918
BstBAI YACGTR 1 cut(s) 97
BstBI TTCGAA 1 cut(s) 933
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 4 cut(s) 57, 231, 880, 1101
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 2 cut(s) 376, 1180
BstHHI GCGC 2 cut(s) 1006, 1039
BstKTI GATC 5 cut(s) 661, 899, 903, 1057, 1217
BstMAI GTCTC 2 cut(s) 24, 801
BstMBI GATC 5 cut(s) 658, 896, 900, 1054, 1214
BstMCI CGRYCG 1 cut(s) 903
BstMWI GCNNNNNNNGC 2 cut(s) 203, 883
BstNSI RCATGY 2 cut(s) 382, 614
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 1066
BstV1I GCAGC 1 cut(s) 1046
Bsu15I ATCGAT 1 cut(s) 899
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 877
BsuTUI ATCGAT 1 cut(s) 899
BtgI CCRYGG 1 cut(s) 442
BtgZI GCGATG 2 cut(s) 419, 1007
BtrI CACGTC 1 cut(s) 1067
BtsCI GGATG 2 cut(s) 376, 1180
BtsIMutI CAGTG 4 cut(s) 227, 321, 507, 1198
Cac8I GCNNGC 1 cut(s) 204
CaiI CAGNNNCTG 1 cut(s) 336
CfoI GCGC 2 cut(s) 1006, 1039
Cfr13I GGNCC 2 cut(s) 707, 876
ClaI ATCGAT 1 cut(s) 899
CseI GACGC 1 cut(s) 41
Csp6I GTAC 8 cut(s) 82, 98, 175, 295, 334, 418, 798, 919
CviAII CATG 9 cut(s) 149, 350, 361, 379, 412, 443, 611, 716, 1058
CviQI GTAC 8 cut(s) 82, 98, 175, 295, 334, 418, 798, 919
DdeI CTNAG 4 cut(s) 57, 231, 880, 1101
DpnI GATC 5 cut(s) 660, 898, 902, 1056, 1216
DpnII GATC 5 cut(s) 658, 896, 900, 1054, 1214
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 801
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 908
Eco88I CYCGRG 1 cut(s) 1084
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 9 cut(s) 152, 353, 364, 382, 415, 446, 614, 719, 1061
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FaqI GGGAC 2 cut(s) 423, 693
FatI CATG 9 cut(s) 148, 349, 360, 378, 411, 442, 610, 715, 1057
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 1 cut(s) 1035
FokI GGATG 2 cut(s) 383, 1167
Fsp4HI GCNGC 1 cut(s) 1035
FspBI CTAG 5 cut(s) 21, 203, 804, 908, 938
FspI TGCGCA 1 cut(s) 1005
GlaI GCGC 2 cut(s) 1005, 1038
GluI GCNGC 1 cut(s) 1035
GsuI CTGGAG 2 cut(s) 146, 657
HaeIII GGCC 1 cut(s) 877
HgaI GACGC 1 cut(s) 41
HhaI GCGC 2 cut(s) 1006, 1039
Hin1I GRCGYC 1 cut(s) 436
Hin1II CATG 9 cut(s) 152, 353, 364, 382, 415, 446, 614, 719, 1061
Hin6I GCGC 2 cut(s) 1004, 1037
HinP1I GCGC 2 cut(s) 1004, 1037
HindIII AAGCTT 3 cut(s) 131, 486, 1146
HinfI GANTC 6 cut(s) 24, 121, 245, 626, 665, 835
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 5 cut(s) 592, 650, 798, 919, 1064
Hpy188I TCNGA 3 cut(s) 29, 234, 883
Hpy188III TCNNGA 8 cut(s) 21, 125, 188, 249, 634, 662, 804, 1184
Hpy8I GTNNAC 5 cut(s) 592, 650, 798, 919, 1064
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 5 cut(s) 24, 425, 452, 580, 883
HpyCH4III ACNGT 4 cut(s) 222, 316, 795, 973
HpyCH4IV ACGT 4 cut(s) 96, 271, 436, 1066
HpyCH4V TGCA 5 cut(s) 197, 212, 553, 787, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 883
HpyF3I CTNAG 4 cut(s) 57, 231, 880, 1101
HpySE526I ACGT 4 cut(s) 96, 271, 436, 1066
Hsp92I GRCGYC 1 cut(s) 436
Hsp92II CATG 9 cut(s) 152, 353, 364, 382, 415, 446, 614, 719, 1061
HspAI GCGC 2 cut(s) 1004, 1037
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 5 cut(s) 658, 896, 900, 1054, 1214
LmnI GCTCC 1 cut(s) 771
Lsp1109I GCAGC 1 cut(s) 1046
LweI GCATC 3 cut(s) 199, 361, 1175
MaeI CTAG 5 cut(s) 21, 203, 804, 908, 938
MaeII ACGT 4 cut(s) 96, 271, 436, 1066
MaeIII GTNAC 5 cut(s) 364, 469, 533, 820, 994
MalI GATC 5 cut(s) 660, 898, 902, 1056, 1216
MboI GATC 5 cut(s) 658, 896, 900, 1054, 1214
MboII GAAGA 3 cut(s) 247, 841, 844
MfeI CAATTG 2 cut(s) 43, 1009
MhlI GDGCHC 1 cut(s) 1066
MluCI AATT 6 cut(s) 43, 167, 499, 942, 1009, 1128
MlyI GAGTC 2 cut(s) 18, 115
MmeI TCCRAC 1 cut(s) 793
MroXI GAANNNNTTC 2 cut(s) 389, 1149
MseI TTAA 2 cut(s) 564, 1127
MslI CAYNNNNRTG 1 cut(s) 1026
MunI CAATTG 2 cut(s) 43, 1009
Mva1269I GAATGC 1 cut(s) 682
MwoI GCNNNNNNNGC 2 cut(s) 203, 883
NcoI CCATGG 1 cut(s) 442
NdeII GATC 5 cut(s) 658, 896, 900, 1054, 1214
NheI GCTAGC 1 cut(s) 202
NlaIII CATG 9 cut(s) 152, 353, 364, 382, 415, 446, 614, 719, 1061
NlaIV GGNNCC 1 cut(s) 709
NmeAIII GCCGAG 1 cut(s) 1098
NmuCI GTSAC 4 cut(s) 364, 533, 820, 994
NsbI TGCGCA 1 cut(s) 1005
NspI RCATGY 2 cut(s) 382, 614
NspV TTCGAA 1 cut(s) 933
PciI ACATGT 2 cut(s) 378, 610
PcsI WCGNNNNNNNCGW 1 cut(s) 930
PctI GAATGC 1 cut(s) 682
PdmI GAANNNNTTC 2 cut(s) 389, 1149
PfeI GAWTC 4 cut(s) 245, 626, 665, 835
PflMI CCANNNNNTGG 1 cut(s) 775
PkrI GCNGC 1 cut(s) 1036
Ple19I CGATCG 1 cut(s) 903
PleI GAGTC 2 cut(s) 18, 115
PpsI GAGTC 2 cut(s) 18, 115
Ppu21I YACGTR 1 cut(s) 97
PscI ACATGT 2 cut(s) 378, 610
Psp1406I AACGTT 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 2 cut(s) 707, 876
PsrI GAACNNNNNNTAC 2 cut(s) 401, 433
PstNI CAGNNNCTG 1 cut(s) 336
PvuI CGATCG 1 cut(s) 903
RsaI GTAC 8 cut(s) 83, 99, 176, 296, 335, 419, 799, 920
RsaNI GTAC 8 cut(s) 82, 98, 175, 295, 334, 418, 798, 919
RseI CAYNNNNRTG 1 cut(s) 1026
SaqAI TTAA 2 cut(s) 564, 1127
SatI GCNGC 1 cut(s) 1035
Sau3AI GATC 5 cut(s) 658, 896, 900, 1054, 1214
Sau96I GGNCC 2 cut(s) 707, 876
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 2 cut(s) 18, 115
SduI GDGCHC 1 cut(s) 1066
SfaNI GCATC 3 cut(s) 199, 361, 1175
SfcI CTRYAG 1 cut(s) 36
SfuI TTCGAA 1 cut(s) 933
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 1 cut(s) 1026
Sse9I AATT 6 cut(s) 43, 167, 499, 942, 1009, 1128
SsiI CCGC 3 cut(s) 79, 374, 680
SspI AATATT 2 cut(s) 1116, 1206
SspMI CTAG 5 cut(s) 21, 203, 804, 908, 938
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 4 cut(s) 222, 316, 795, 973
TaiI ACGT 4 cut(s) 99, 274, 439, 1069
TaqI TCGA 5 cut(s) 72, 171, 248, 899, 933
TasI AATT 6 cut(s) 43, 167, 499, 942, 1009, 1128
TatI WGTACW 2 cut(s) 417, 918
TfiI GAWTC 4 cut(s) 245, 626, 665, 835
Tru1I TTAA 2 cut(s) 564, 1127
Tru9I TTAA 2 cut(s) 564, 1127
TscAI CASTG 4 cut(s) 227, 321, 514, 1198
TseFI GTSAC 4 cut(s) 364, 533, 820, 994
TseI GCWGC 1 cut(s) 1034
Tsp45I GTSAC 4 cut(s) 364, 533, 820, 994
TspDTI ATGAA 3 cut(s) 6, 422, 428
TspGWI ACGGA 2 cut(s) 383, 806
TspRI CASTG 4 cut(s) 227, 321, 514, 1198
Van91I CCANNNNNTGG 1 cut(s) 775
VneI GTGCAC 1 cut(s) 1062
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 2 cut(s) 167, 942
XbaI TCTAGA 2 cut(s) 20, 803
XceI RCATGY 2 cut(s) 382, 614
XcmI CCANNNNNNNNNTGG 2 cut(s) 461, 1208
XmiI GTMKAC 1 cut(s) 591
XmnI GAANNNNTTC 2 cut(s) 389, 1149
XspI CTAG 5 cut(s) 21, 203, 804, 908, 938
ZraI GACGTC 1 cut(s) 437
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.