FvH4_4g35711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008103
Physical Location & Seq
Forward (+)
32926926 .. 32927964
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35711.t1

Sequence Viewer

Length: 771 bp
ATGGACAATGTATTTTTATTTTCTTTTGAGTATTTTGTTAAATTTTGGAAGCATACGAGTTTTGATCATAACCCAAAAGGTATAATGGTTTCGAATCCTTCATCAAGGCTTGAATCAAGGCTAGAAGAGGAGGGAAGGAGGGAAGTTTTTTACCGTGAACCTGTTAGGCCTCAACGATCTCTTGAAAGTTTCGAATATCTCATATACATCAAACGTCAAGACTTTATCGAGAAGTACAGTATTGCAACTGTACAAGTGTGCAACAGCGATGCTGAAGCTACAAGACATTGGGACACTCAAACGAGGCACGATGAAAAAGTTTTCATACATCCACAGCGTTGTAGGAAGATACAGGGAGGAACATACTGGCTGATTTTTCCAAAGGTCATCAGACACATCAAGGTGTGGATGGATGAACATACCAAGGGACAAGTTACGGATGAAGCAATGTGGAACATCTTGAGCAAAGTTGGGCAACACATGACATATTTGGTAGAAGTTGACCGGCCCCATGGCAATTTGTTTCAAGGTATAGGAGTGACTACTGATTTTCAGCCTCTCTTTTTAAATTTGGGGCGTGAAACAGGACCACTCGTATACCAAAGTGATGCCAAAGCCTTGCGTGATGACATTCTTGGAAAAGTTAAGTTGCGGGACGAGGACTCACAGAAGCATGTTGAGAATTGGTGGTCTTTTCTGTCCAAGAGTTGTGCAGATACTTCACCACGGCACCACCTTTCCTTCCTCATGATTATACTGGCGACCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

30.26

Weight (kDa)

7.21

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 729
AccI GTMKAC 1 cut(s) 597
AciI CCGC 1 cut(s) 652
AcsI RAATTY 2 cut(s) 41, 568
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 2 cut(s) 236, 252
AgsI TTSAA 3 cut(s) 113, 185, 527
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AoxI GGCC 2 cut(s) 167, 506
ApoI RAATTY 2 cut(s) 41, 568
AspS9I GGNCC 2 cut(s) 507, 587
AsuHPI GGTGA 1 cut(s) 714
AsuII TTCGAA 2 cut(s) 92, 192
AvaII GGWCC 1 cut(s) 587
BanI GGYRCC 1 cut(s) 729
BccI CCATC 1 cut(s) 403
BceAI ACGGC 1 cut(s) 743
BclI TGATCA 1 cut(s) 64
BfaI CTAG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 2 cut(s) 507, 587
BmiI GGNNCC 2 cut(s) 509, 731
BmsI GCATC 2 cut(s) 259, 598
Bpu14I TTCGAA 2 cut(s) 92, 192
BpuEI CTTGAG 1 cut(s) 481
BsaJI CCNNGG 3 cut(s) 423, 511, 725
Bse118I RCCGGY 1 cut(s) 504
Bse1I ACTGG 2 cut(s) 371, 762
Bse3DI GCAATG 1 cut(s) 453
BseDI CCNNGG 3 cut(s) 423, 511, 725
BseGI GGATG 4 cut(s) 328, 414, 418, 445
BseMI GCAATG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 371, 762
BseRI GAGGAG 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 732
BshFI GGCC 2 cut(s) 169, 508
BshNI GGYRCC 1 cut(s) 729
BsiSI CCGG 1 cut(s) 505
BslFI GGGAC 3 cut(s) 305, 441, 668
BsmFI GGGAC 3 cut(s) 305, 441, 668
BsnI GGCC 2 cut(s) 169, 508
Bsp119I TTCGAA 2 cut(s) 92, 192
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 2 cut(s) 64, 176
Bsp19I CCATGG 1 cut(s) 511
BspACI CCGC 1 cut(s) 652
BspANI GGCC 2 cut(s) 169, 508
BspHI TCATGA 1 cut(s) 747
BspLI GGNNCC 2 cut(s) 509, 731
BspT104I TTCGAA 2 cut(s) 92, 192
BspT107I GGYRCC 1 cut(s) 729
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 504
BsrGI TGTACA 1 cut(s) 250
BsrI ACTGG 2 cut(s) 371, 762
BssAI RCCGGY 1 cut(s) 504
BssECI CCNNGG 3 cut(s) 423, 511, 725
BssMI GATC 2 cut(s) 64, 176
BssNAI GTATAC 1 cut(s) 598
BssT1I CCWWGG 2 cut(s) 423, 511
Bst1107I GTATAC 1 cut(s) 598
Bst4CI ACNGT 3 cut(s) 155, 239, 250
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 250
BstBI TTCGAA 2 cut(s) 92, 192
BstDSI CCRYGG 2 cut(s) 511, 725
BstF5I GGATG 4 cut(s) 328, 414, 418, 445
BstKTI GATC 2 cut(s) 67, 179
BstMBI GATC 2 cut(s) 64, 176
BstNSI RCATGY 1 cut(s) 677
BstZ17I GTATAC 1 cut(s) 598
BsuRI GGCC 2 cut(s) 169, 508
BtgI CCRYGG 2 cut(s) 511, 725
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 4 cut(s) 328, 414, 418, 445
CciI TCATGA 1 cut(s) 747
Cfr10I RCCGGY 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 507, 587
Csp6I GTAC 2 cut(s) 235, 251
CviAII CATG 4 cut(s) 481, 512, 674, 748
CviJI RGCY 8 cut(s) 109, 121, 169, 278, 370, 508, 556, 617
CviKI_1 RGCY 8 cut(s) 109, 121, 169, 278, 370, 508, 556, 617
CviQI GTAC 2 cut(s) 235, 251
DpnI GATC 2 cut(s) 66, 178
DpnII GATC 2 cut(s) 64, 176
DraI TTTAAA 1 cut(s) 567
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 423, 511
Eco147I AGGCCT 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 423, 511
ErhI CCWWGG 2 cut(s) 423, 511
FaeI CATG 4 cut(s) 484, 515, 677, 751
FaqI GGGAC 3 cut(s) 305, 441, 668
FatI CATG 4 cut(s) 480, 511, 673, 747
FauI CCCGC 1 cut(s) 645
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 1 cut(s) 597
FokI GGATG 4 cut(s) 315, 421, 425, 452
FspBI CTAG 1 cut(s) 122
HaeIII GGCC 2 cut(s) 169, 508
HapII CCGG 1 cut(s) 505
Hin1II CATG 4 cut(s) 484, 515, 677, 751
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 3 cut(s) 94, 113, 662
HpaII CCGG 1 cut(s) 505
HphI GGTGA 1 cut(s) 714
Hpy166II GTNNAC 3 cut(s) 158, 502, 598
Hpy188I TCNGA 1 cut(s) 392
Hpy188III TCNNGA 5 cut(s) 182, 218, 229, 460, 748
Hpy8I GTNNAC 3 cut(s) 158, 502, 598
HpyAV CCTTC 3 cut(s) 108, 129, 751
HpyCH4III ACNGT 3 cut(s) 155, 239, 250
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 245, 261, 713
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 4 cut(s) 484, 515, 677, 751
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 64, 176
LpnPI CCDG 6 cut(s) 174, 338, 352, 518, 570, 743
LweI GCATC 2 cut(s) 259, 598
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 2 cut(s) 433, 538
MalI GATC 2 cut(s) 66, 178
MboI GATC 2 cut(s) 64, 176
MboII GAAGA 2 cut(s) 137, 358
MluCI AATT 4 cut(s) 41, 517, 568, 682
MlyI GAGTC 1 cut(s) 656
MnlI CCTC 9 cut(s) 121, 124, 132, 180, 297, 350, 567, 652, 755
MseI TTAA 3 cut(s) 39, 566, 645
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 1 cut(s) 505
NcoI CCATGG 1 cut(s) 511
NdeII GATC 2 cut(s) 64, 176
NlaIII CATG 4 cut(s) 484, 515, 677, 751
NlaIV GGNNCC 2 cut(s) 509, 731
NmuCI GTSAC 1 cut(s) 538
NspI RCATGY 1 cut(s) 677
NspV TTCGAA 2 cut(s) 92, 192
PagI TCATGA 1 cut(s) 747
PceI AGGCCT 1 cut(s) 169
PfeI GAWTC 2 cut(s) 94, 113
PleI GAGTC 1 cut(s) 656
PpsI GAGTC 1 cut(s) 656
PspN4I GGNNCC 2 cut(s) 509, 731
PspPI GGNCC 2 cut(s) 507, 587
RsaI GTAC 2 cut(s) 236, 252
RsaNI GTAC 2 cut(s) 235, 251
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 3 cut(s) 39, 566, 645
Sau3AI GATC 2 cut(s) 64, 176
Sau96I GGNCC 2 cut(s) 507, 587
SchI GAGTC 1 cut(s) 656
SetI ASST 9 cut(s) 82, 163, 217, 280, 387, 405, 532, 738, 770
SfaNI GCATC 2 cut(s) 259, 598
SfuI TTCGAA 2 cut(s) 92, 192
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 4 cut(s) 41, 517, 568, 682
SseBI AGGCCT 1 cut(s) 169
SsiI CCGC 1 cut(s) 652
SspMI CTAG 1 cut(s) 122
StuI AGGCCT 1 cut(s) 169
StyI CCWWGG 2 cut(s) 423, 511
TaaI ACNGT 3 cut(s) 155, 239, 250
TaiI ACGT 1 cut(s) 217
TaqI TCGA 3 cut(s) 92, 192, 228
TasI AATT 4 cut(s) 41, 517, 568, 682
TatI WGTACW 2 cut(s) 234, 250
TfiI GAWTC 2 cut(s) 94, 113
Tru1I TTAA 3 cut(s) 39, 566, 645
Tru9I TTAA 3 cut(s) 39, 566, 645
TseFI GTSAC 1 cut(s) 538
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 5 cut(s) 90, 313, 327, 429, 456
TspGWI ACGGA 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 2 cut(s) 41, 568
XceI RCATGY 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.