Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Forward (+)

1329747 .. 1331530

Gene Structure 1784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCTCGATATAATCCTTCATCTTCACTGGAGATTCAAAATTTAGCAAAACGTCCAAGGACGTATCCAACTCTCACAACGATGCAACATCCGTACTATCTCCCTGCCGCTCCTCCAGAAGATCTTAGCACTGATATCGAACAACTACGATACATCACGTATCAGCCCTTCATAGGAAGACATAGCATTGCGACTATTCAAGAATTCGAGAATCTTGAGGATGCTGAAGAACATTGGAAGACTCAAAGGAGGTATGACTCGACGGTTCTCATACACCCAGATGAGTGTATTATGCGTGAGGGTAAGCATGTTTTGATTTTTGAAGGAGTTATCAGAGAGTTCTTAGTCTGGGTGGAGAAAGCTGAAGTCACTGATGCGGACATGAATGAGATCTTGCATCAGATTGGGAAGAACCTCAAGTATTTGGTTTCAGTAAAGAGACCACATGGCAACCTTCGTAGAGGCATAGGCGTAACACCTGATCTTAAAGTTTATTTCTTCAATTTGGGTGCTGATGCCACTCGCACAGAGAAGAGGCGGAAGAGCTACAAGGATGATGTTCAAGCCTTGCACGATTTTCTTGTAACCATCGAATCTAAGCTGAAAGAGGGCTCGGAATATGTTACGAGGTGGAAAAAATTTCTGTCCACGAGTTGTCTAGATCCTCCTATATCCCCTCCAATTTGGTTATCACCTATCCATCCACGCTATTGCGACAACCATGTTATTGTAGCCTTCAACTATCCAGCCTCATGGGACGTCCAAGACAAGCTACGCTTCGTTGCAAACATGCATGCACTATGCACAGACAAAGCCAACAATTCAAATTCAAGTCCCAATTTGATCAAGCATCCAGAATTTGTAAAATATTTTGCTACTCGTTATGCTGATTGGCCAAGCAAGTTGACAGGTATGCTAAACCAAGTGTACCAATTCGGATATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.73

Weight (kDa)

7.72

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	762
AccBSI	CCGCTC	1 cut(s)	110
AciI	CCGC	3 cut(s)	108, 377, 538
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	893
AcsI	RAATTY	5 cut(s)	40, 203, 638, 826, 857
AcuI	CTGAAG	2 cut(s)	246, 384
AcyI	GRCGYC	1 cut(s)	759
AfaI	GTAC	2 cut(s)	95, 929
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	8 cut(s)	38, 200, 323, 502, 563, 739, 825, 831
AluBI	AGCT	4 cut(s)	362, 546, 601, 772
AluI	AGCT	4 cut(s)	362, 546, 601, 772
Alw26I	GTCTC	2 cut(s)	9, 433
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	1 cut(s)	893
ApoI	RAATTY	5 cut(s)	40, 203, 638, 826, 857
AsuHPI	GGTGA	1 cut(s)	684
BalI	TGGCCA	1 cut(s)	895
BanII	GRGCYC	1 cut(s)	614
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
BauI	CACGAG	1 cut(s)	649
BbsI	GAAGAC	2 cut(s)	184, 245
BccI	CCATC	2 cut(s)	596, 708
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciVI	GTATCC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	2 cut(s)	9, 433
BfaI	CTAG	1 cut(s)	659
BfuI	GTATCC	1 cut(s)	75
BglII	AGATCT	2 cut(s)	121, 390
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmsI	GCATC	6 cut(s)	72, 211, 364, 406, 505, 859
BpiI	GAAGAC	2 cut(s)	184, 245
BpmI	CTGGAG	2 cut(s)	50, 99
BpuEI	CTTGAG	2 cut(s)	236, 401
BsaAI	YACGTR	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	5 cut(s)	88, 226, 559, 700, 850
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	895
BslFI	GGGAC	2 cut(s)	770, 819
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	9, 433
BsmFI	GGGAC	2 cut(s)	770, 819
BsnI	GGCC	1 cut(s)	895
Bso31I	GGTCTC	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp143I	GATC	5 cut(s)	121, 390, 481, 661, 843
BspACI	CCGC	3 cut(s)	108, 377, 538
BspANI	GGCC	1 cut(s)	895
BspPI	GGATC	1 cut(s)	656
BspQI	GCTCTTC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	433
BsrBI	CCGCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	5 cut(s)	121, 390, 481, 661, 843
BssNI	GRCGYC	1 cut(s)	759
BssSI	CACGAG	1 cut(s)	649
BssT1I	CCWWGG	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	649
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	527, 536
BstACI	GRCGYC	1 cut(s)	759
BstBAI	YACGTR	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	3 cut(s)	125, 343, 597
BstF5I	GGATG	5 cut(s)	88, 226, 559, 700, 850
BstKTI	GATC	5 cut(s)	124, 393, 484, 664, 846
BstMAI	GTCTC	2 cut(s)	9, 433
BstMBI	GATC	5 cut(s)	121, 390, 481, 661, 843
BstNSI	RCATGY	3 cut(s)	311, 793, 797
BstV2I	GAAGAC	2 cut(s)	184, 245
BstX2I	RGATCY	3 cut(s)	121, 390, 661
BstXI	CCANNNNNNTGG	1 cut(s)	753
BstYI	RGATCY	3 cut(s)	121, 390, 661
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	895
BtsCI	GGATG	5 cut(s)	88, 226, 559, 700, 850
BtsIMutI	CAGTG	3 cut(s)	26, 129, 369
Cac8I	GCNNGC	1 cut(s)	795
Csp6I	GTAC	2 cut(s)	94, 928
CviAII	CATG	7 cut(s)	308, 382, 446, 722, 753, 790, 794
CviQI	GTAC	2 cut(s)	94, 928
DdeI	CTNAG	3 cut(s)	125, 343, 597
DpnI	GATC	5 cut(s)	123, 392, 483, 663, 845
DpnII	GATC	5 cut(s)	121, 390, 481, 661, 843
EaeI	YGGCCR	1 cut(s)	893
Eam1104I	CTCTTC	2 cut(s)	527, 536
EarI	CTCTTC	2 cut(s)	527, 536
EciI	GGCGGA	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	614
Eco31I	GGTCTC	1 cut(s)	433
Eco32I	GATATC	2 cut(s)	136, 941
Eco57I	CTGAAG	2 cut(s)	246, 384
EcoRI	GAATTC	1 cut(s)	203
EcoRV	GATATC	2 cut(s)	136, 941
EcoT14I	CCWWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	795
EcoT38I	GRGCYC	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	7 cut(s)	311, 385, 449, 725, 756, 793, 797
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	2 cut(s)	770, 819
FatI	CATG	7 cut(s)	307, 381, 445, 721, 752, 789, 793
FbaI	TGATCA	1 cut(s)	843
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	5 cut(s)	75, 233, 566, 687, 837
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	2 cut(s)	50, 99
HaeIII	GGCC	1 cut(s)	895
Hin1I	GRCGYC	1 cut(s)	759
Hin1II	CATG	7 cut(s)	311, 385, 449, 725, 756, 793, 797
HincII	GTYRAC	1 cut(s)	906
HindII	GTYRAC	1 cut(s)	906
HinfI	GANTC	5 cut(s)	34, 211, 241, 257, 593
HphI	GGTGA	1 cut(s)	684
Hpy166II	GTNNAC	3 cut(s)	648, 906, 928
Hpy188I	TCNGA	4 cut(s)	335, 402, 616, 938
Hpy188III	TCNNGA	7 cut(s)	6, 116, 200, 208, 215, 659, 854
Hpy8I	GTNNAC	3 cut(s)	648, 906, 928
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	5 cut(s)	27, 178, 317, 464, 745
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	4 cut(s)	52, 62, 158, 759
HpyCH4V	TGCA	7 cut(s)	85, 397, 571, 785, 793, 797, 804
HpyF3I	CTNAG	3 cut(s)	125, 343, 597
HpySE526I	ACGT	4 cut(s)	52, 62, 158, 759
Hsp92I	GRCGYC	1 cut(s)	759
Hsp92II	CATG	7 cut(s)	311, 385, 449, 725, 756, 793, 797
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	5 cut(s)	121, 390, 481, 661, 843
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	9 cut(s)	14, 117, 129, 291, 334, 492, 759, 867, 894
LweI	GCATC	6 cut(s)	72, 211, 364, 406, 505, 859
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	4 cut(s)	52, 62, 158, 759
MaeIII	GTNAC	4 cut(s)	367, 472, 583, 622
MalI	GATC	5 cut(s)	123, 392, 483, 663, 845
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	5 cut(s)	121, 390, 481, 661, 843
MboII	GAAGA	9 cut(s)	15, 131, 189, 239, 250, 421, 490, 544, 553
MflI	RGATCY	3 cut(s)	121, 390, 661
MhlI	GDGCHC	1 cut(s)	614
MlsI	TGGCCA	1 cut(s)	895
MluNI	TGGCCA	1 cut(s)	895
MlyI	GAGTC	2 cut(s)	235, 251
MmeI	TCCRAC	1 cut(s)	92
Mox20I	TGGCCA	1 cut(s)	895
Mph1103I	ATGCAT	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	895
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	2 cut(s)	80, 279
Msp20I	TGGCCA	1 cut(s)	895
NdeII	GATC	5 cut(s)	121, 390, 481, 661, 843
NlaIII	CATG	7 cut(s)	311, 385, 449, 725, 756, 793, 797
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	3 cut(s)	311, 793, 797
PaeI	GCATGC	1 cut(s)	797
PciSI	GCTCTTC	1 cut(s)	536
PfeI	GAWTC	3 cut(s)	34, 211, 593
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	235, 251
PpsI	GAGTC	2 cut(s)	235, 251
Ppu21I	YACGTR	1 cut(s)	159
PsuI	RGATCY	3 cut(s)	121, 390, 661
RsaI	GTAC	2 cut(s)	95, 929
RsaNI	GTAC	2 cut(s)	94, 928
RseI	CAYNNNNRTG	2 cut(s)	80, 279
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	5 cut(s)	121, 390, 481, 661, 843
SchI	GAGTC	2 cut(s)	235, 251
SduI	GDGCHC	1 cut(s)	614
SfaNI	GCATC	6 cut(s)	72, 211, 364, 406, 505, 859
SmiMI	CAYNNNNRTG	2 cut(s)	80, 279
SmlI	CTYRAG	2 cut(s)	215, 416
SmoI	CTYRAG	2 cut(s)	215, 416
SphI	GCATGC	1 cut(s)	797
SsiI	CCGC	3 cut(s)	108, 377, 538
SspI	AATATT	1 cut(s)	869
SspMI	CTAG	1 cut(s)	659
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	4 cut(s)	55, 65, 161, 762
TaqI	TCGA	5 cut(s)	7, 138, 207, 260, 591
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	34, 211, 593
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	3 cut(s)	33, 136, 376
TseFI	GTSAC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	9, 160, 398
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	3 cut(s)	33, 136, 376
XapI	RAATTY	5 cut(s)	40, 203, 638, 826, 857
XbaI	TCTAGA	1 cut(s)	658
XceI	RCATGY	3 cut(s)	311, 793, 797
XspI	CTAG	1 cut(s)	659
ZraI	GACGTC	1 cut(s)	760
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.