FvH4_4g35724

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008103
Physical Location & Seq
Forward (+)
32940855 .. 32941668
814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35724.t1

Sequence Viewer

Length: 567 bp
ATGAGTTGTGCAGATACTTCACCACCTTTCCTTCCTCATGATTATACTGGCGACCACCTAAAGTTTGTCTTTAACTATCCAATCTCTTGGGATAGCAACAACAAACTAAGATTTCTAGCGAATATATATCAACTATGCACAACCGATGACCCACAATCCCAGTATAATCTGTTGAACCATCCAACATTTGAAGCATCTCTAGAACAGCACTACTGGAATTGGCCAGCAGAATTGACTCACGGAGCCCTTGCTCTCAACGAAGTGTGCCTATTTGGTTCTAGTAAAGGAATCTACAGGGAAGTGTACGACCCACATACCAGTCAAATGGTTATATCTCCGGCATCCATTGTGATCTTCGCACACAATTACGTTAGACACCGGCATATGGAGGCACAGAACTATAACAAGGTGCATGGTGTACGTCTGCGGGAGATGGAGGCAAGTAATATTCTTATTGAATTATATATACGATTTCCCTCTTTGATCGAACGAATCTACGAAGCCTTCTACATGCCGTGGTGTTTGGTGGCTACTCCCATTCCAAGTTCCCCATTGGCGATATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.86

Weight (kDa)

5.88

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 427
AcoI YGGCCR 1 cut(s) 221
AfaI GTAC 2 cut(s) 305, 420
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 3 cut(s) 175, 191, 458
AoxI GGCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 12
BalI TGGCCA 1 cut(s) 223
BanII GRGCYC 1 cut(s) 247
BccI CCATC 2 cut(s) 186, 427
BceAI ACGGC 1 cut(s) 499
BfaI CTAG 3 cut(s) 116, 200, 279
BfmI CTRYAG 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 2 cut(s) 203, 350
BmuI ACTGGG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 515
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 4 cut(s) 52, 160, 218, 318
BseDI CCNNGG 1 cut(s) 515
BseGI GGATG 2 cut(s) 178, 341
BseLI CCNNNNNNNGG 1 cut(s) 385
BseNI ACTGG 4 cut(s) 52, 160, 218, 318
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 223
BsiSI CCGG 2 cut(s) 338, 379
BslI CCNNNNNNNGG 1 cut(s) 385
BsnI GGCC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 351, 483
BspACI CCGC 1 cut(s) 427
BspANI GGCC 1 cut(s) 223
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 4 cut(s) 52, 160, 218, 318
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 2 cut(s) 351, 483
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 515
BstF5I GGATG 2 cut(s) 178, 341
BstKTI GATC 2 cut(s) 354, 486
BstMBI GATC 2 cut(s) 351, 483
BstNSI RCATGY 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 292
BstXI CCANNNNNNTGG 2 cut(s) 87, 325
BsuRI GGCC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 515
BtsCI GGATG 2 cut(s) 178, 341
Cac8I GCNNGC 1 cut(s) 225
CciI TCATGA 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 378
Csp6I GTAC 2 cut(s) 304, 419
CviAII CATG 3 cut(s) 38, 413, 511
CviJI RGCY 4 cut(s) 223, 245, 503, 530
CviKI_1 RGCY 4 cut(s) 223, 245, 503, 530
CviQI GTAC 2 cut(s) 304, 419
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 353, 485
DpnII GATC 2 cut(s) 351, 483
EaeI YGGCCR 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 247
FaeI CATG 3 cut(s) 41, 416, 514
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 3 cut(s) 37, 412, 510
FauI CCCGC 1 cut(s) 420
FauNDI CATATG 1 cut(s) 384
FokI GGATG 2 cut(s) 165, 328
FriOI GRGCYC 1 cut(s) 247
FspBI CTAG 3 cut(s) 116, 200, 279
HaeIII GGCC 1 cut(s) 223
HapII CCGG 2 cut(s) 338, 379
Hin1II CATG 3 cut(s) 41, 416, 514
HinfI GANTC 3 cut(s) 235, 288, 492
HpaII CCGG 2 cut(s) 338, 379
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 2 cut(s) 304, 419
Hpy188III TCNNGA 2 cut(s) 38, 200
Hpy8I GTNNAC 2 cut(s) 304, 419
HpyAV CCTTC 2 cut(s) 41, 514
HpyCH4IV ACGT 2 cut(s) 369, 421
HpyCH4V TGCA 3 cut(s) 11, 138, 412
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 2 cut(s) 369, 421
Hsp92II CATG 3 cut(s) 41, 416, 514
Kzo9I GATC 2 cut(s) 351, 483
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 8 cut(s) 33, 173, 199, 237, 280, 331, 351, 392
LweI GCATC 2 cut(s) 203, 350
MaeI CTAG 3 cut(s) 116, 200, 279
MaeII ACGT 2 cut(s) 369, 421
MalI GATC 2 cut(s) 353, 485
MboI GATC 2 cut(s) 351, 483
MboII GAAGA 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 223
MluCI AATT 4 cut(s) 217, 230, 364, 458
MluNI TGGCCA 1 cut(s) 223
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 4 cut(s) 45, 382, 430, 487
Mox20I TGGCCA 1 cut(s) 223
MscI TGGCCA 1 cut(s) 223
MseI TTAA 2 cut(s) 72, 565
Msp20I TGGCCA 1 cut(s) 223
MspI CCGG 2 cut(s) 338, 379
NdeI CATATG 1 cut(s) 384
NdeII GATC 2 cut(s) 351, 483
NlaIII CATG 3 cut(s) 41, 416, 514
NlaIV GGNNCC 1 cut(s) 244
NspI RCATGY 1 cut(s) 514
PagI TCATGA 1 cut(s) 37
PfeI GAWTC 2 cut(s) 288, 492
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 244
RsaI GTAC 2 cut(s) 305, 420
RsaNI GTAC 2 cut(s) 304, 419
SaqAI TTAA 2 cut(s) 72, 565
Sau3AI GATC 2 cut(s) 351, 483
SchI GAGTC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 247
SetI ASST 5 cut(s) 28, 60, 372, 411, 424
SfaNI GCATC 2 cut(s) 203, 350
SfcI CTRYAG 1 cut(s) 292
Sse9I AATT 4 cut(s) 217, 230, 364, 458
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 448
SspMI CTAG 3 cut(s) 116, 200, 279
TaiI ACGT 2 cut(s) 372, 424
TaqI TCGA 1 cut(s) 486
TasI AATT 4 cut(s) 217, 230, 364, 458
TfiI GAWTC 2 cut(s) 288, 492
Tru1I TTAA 2 cut(s) 72, 565
Tru9I TTAA 2 cut(s) 72, 565
TspGWI ACGGA 1 cut(s) 255
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 1 cut(s) 514
XspI CTAG 3 cut(s) 116, 200, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.