Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Forward (+)

2870394 .. 2875627

Gene Structure 5234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG030000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCTTCAAATCCTTCATCTAGACTCAGAGACACTTTAGCCAAGTTGTTTCCAGCTGAACCAGTAATGCTCGAACATCGGTACCATTTCTCTCGCACTCCTCCACCATGCCTTGATCTTACTATCGAACACCTTCGATATATTAAATATCAACCCTTGGAAGGTATAGATGACTACGCAACTATACAAGAATTCACAGATCTTGCCGATGCAGAGAGACATTGGGACACTCAGAAAATGTATGACTCAAGATTTCTCATACACCCAAAAAGTTGTGTGGTGCACCAAGACAAGTACATTCTGATTTTCCAAACAATTATGAGAGAATTCAACCTCTGGGTAAAAGTACATGCTCTAGGTGATGCCACAGATGCGGATATGTGGAAAATCTTCAAGGATATTGGTAAGAACATGAAATACTTGTCTACAGAAGATCGACCGCATGGCAATCTCCGAGAAGGTATTGGCATAACAACCGATCCTAAAGCTTTCTTTTTTAATTTAGGTGCTGATACACGCAGACAGATATTTGGTGACGATGTTCGAGCCTTGCATGGATTTCTTACAGTCACCGAACCTAGCCTGAAGGACTTGGAAATAAGGGAACATGTTAAAAGGTGGAGATCTTTTTTGTCCACAAGTTGTTTGCATCTTACTCCAGAATCTGATCCATTACTGCATTCAGATATCTATCCTCTCTATGATCCCAACCATGTGAAATTGGTTTTCTATTATCCAACCTCCTCAGACGTCAACGAGAAGCTCCGATTCTTGGAAAATATGCATAAACTATGCACAGACAGAGACAAATACCGTAACAGTTTGAAAAAGAATGGAGCATTTGTAAAATCTCTTGGTGTTCATTATCTTGATTGGCCCGCAAAGCTGAAGGGTAGAGTCACCCTAAATGAAGTGTACCAATATGGTTTTCAGCGAGGAAATTACAAAAAGCAAAATGCAAATACCAGTATAATTGTCGCATGTGAGGCCTCTATTGTTACCTTTGCCCACAATTGTGTTAAACACCACTGTCAGACAGCGCAAAACTATAACAATGCTAATAATGCACGCATGGAGGCAGTGGCAATGAAGAGATCGGAGCTCGTTGATCGTGCAGGGTGGGTGAATAATCTACTGCTTGGGTCGCTTCTACTTTGGTGGTGCGGCTTGGGGATCGGAGGGTCAGAGCGGTGCAGCGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

401

Amino Acids

46.31

Weight (kDa)

8.44

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	753
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	1189
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	6 cut(s)	374, 440, 879, 1164, 1189, 1197
AclWI	GGATC	4 cut(s)	473, 662, 698, 1181
AcsI	RAATTY	2 cut(s)	191, 326
AcuI	CTGAAG	2 cut(s)	605, 908
AcyI	GRCGYC	1 cut(s)	750
AfaI	GTAC	4 cut(s)	83, 296, 348, 917
AfiI	CCNNNNNNNGG	2 cut(s)	161, 772
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	4 cut(s)	9, 331, 394, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	912, 944
AleI	CACNNNNGTG	1 cut(s)	1014
AluBI	AGCT	5 cut(s)	56, 488, 763, 886, 1102
AluI	AGCT	5 cut(s)	56, 488, 763, 886, 1102
Alw21I	GWGCWC	2 cut(s)	285, 1104
Alw26I	GTCTC	3 cut(s)	24, 211, 798
Alw44I	GTGCAC	1 cut(s)	281
AlwI	GGATC	4 cut(s)	473, 662, 698, 1181
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	2 cut(s)	875, 987
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	1194
ApoI	RAATTY	2 cut(s)	191, 326
Asp700I	GAANNNNTTC	2 cut(s)	132, 389
Asp718I	GGTACC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	1042
AspS9I	GGNCC	1 cut(s)	876
AsuHPI	GGTGA	5 cut(s)	371, 545, 562, 892, 1135
BaeGI	GKGCMC	1 cut(s)	285
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BanI	GGYRCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	1104
Bbv12I	GWGCWC	2 cut(s)	285, 1104
BcoDI	GTCTC	3 cut(s)	24, 211, 798
BfaI	CTAG	3 cut(s)	21, 356, 579
BfmI	CTRYAG	1 cut(s)	426
BglII	AGATCT	2 cut(s)	199, 623
BisI	GCNGC	2 cut(s)	1165, 1195
BlsI	GCNGC	2 cut(s)	1166, 1196
BmgT120I	GGNCC	1 cut(s)	876
BmiI	GGNNCC	1 cut(s)	83
BmsI	GCATC	4 cut(s)	199, 352, 361, 658
BpmI	CTGGAG	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	750
BsaJI	CCNNGG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 772
Bse1I	ACTGG	2 cut(s)	62, 966
Bse3DI	GCAATG	1 cut(s)	1092
Bse8I	GATNNNNATC	1 cut(s)	690
BseDI	CCNNGG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	2 cut(s)	161, 772
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	3 cut(s)	40, 245, 759
BseNI	ACTGG	2 cut(s)	62, 966
BseRI	GAGGAG	2 cut(s)	90, 733
BseSI	GKGCMC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	1134
Bsh1285I	CGRYCG	1 cut(s)	440
BshFI	GGCC	2 cut(s)	877, 989
BshNI	GGYRCC	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	440
BsiHKAI	GWGCWC	2 cut(s)	285, 1104
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	161, 772
BsmAI	GTCTC	3 cut(s)	24, 211, 798
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	2 cut(s)	877, 989
Bsp1286I	GDGCHC	2 cut(s)	285, 1104
BspACI	CCGC	6 cut(s)	374, 440, 879, 1164, 1189, 1197
BspANI	GGCC	2 cut(s)	877, 989
BspCNI	CTCAG	3 cut(s)	39, 244, 758
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	4 cut(s)	473, 662, 698, 1181
BspT107I	GGYRCC	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	1189
BsrDI	GCAATG	1 cut(s)	1092
BsrI	ACTGG	2 cut(s)	62, 966
BssECI	CCNNGG	1 cut(s)	156
BssNI	GRCGYC	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	4 cut(s)	568, 815, 821, 1031
Bst6I	CTCTTC	1 cut(s)	1085
BstACI	GRCGYC	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	879, 1069
BstDEI	CTNAG	3 cut(s)	26, 231, 745
BstHHI	GCGC	1 cut(s)	1042
BstMAI	GTCTC	3 cut(s)	24, 211, 798
BstMCI	CGRYCG	1 cut(s)	440
BstMWI	GCNNNNNNNGC	5 cut(s)	371, 883, 986, 1064, 1144
BstNSI	RCATGY	3 cut(s)	353, 611, 984
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	199, 623
BstYI	RGATCY	2 cut(s)	199, 623
BsuRI	GGCC	2 cut(s)	877, 989
BtsI	GCAGTG	1 cut(s)	1086
BtsIMutI	CAGTG	2 cut(s)	1027, 1086
Cac8I	GCNNGC	2 cut(s)	879, 1069
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	1 cut(s)	1042
Cfr13I	GGNCC	1 cut(s)	876
Csp6I	GTAC	4 cut(s)	82, 295, 347, 916
CviAII	CATG	9 cut(s)	108, 350, 412, 443, 554, 608, 713, 981, 1072
CviQI	GTAC	4 cut(s)	82, 295, 347, 916
DdeI	CTNAG	3 cut(s)	26, 231, 745
Eam1104I	CTCTTC	1 cut(s)	1085
EarI	CTCTTC	1 cut(s)	1085
Ecl136II	GAGCTC	1 cut(s)	1102
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	989
Eco24I	GRGCYC	1 cut(s)	1104
Eco32I	GATATC	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	1102
Eco57I	CTGAAG	2 cut(s)	605, 908
EcoICRI	GAGCTC	1 cut(s)	1102
EcoRI	GAATTC	2 cut(s)	191, 326
EcoRV	GATATC	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	1104
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	9 cut(s)	111, 353, 415, 446, 557, 611, 716, 984, 1075
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	9 cut(s)	107, 349, 411, 442, 553, 607, 712, 980, 1071
FauI	CCCGC	1 cut(s)	886
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	2 cut(s)	1165, 1195
FriOI	GRGCYC	1 cut(s)	1104
Fsp4HI	GCNGC	2 cut(s)	1165, 1195
FspBI	CTAG	3 cut(s)	21, 356, 579
GlaI	GCGC	1 cut(s)	1041
GluI	GCNGC	2 cut(s)	1165, 1195
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	2 cut(s)	877, 989
HhaI	GCGC	1 cut(s)	1042
Hin1I	GRCGYC	1 cut(s)	750
Hin1II	CATG	9 cut(s)	111, 353, 415, 446, 557, 611, 716, 984, 1075
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	5 cut(s)	24, 245, 662, 768, 897
HphI	GGTGA	5 cut(s)	371, 545, 562, 892, 1135
Hpy166II	GTNNAC	5 cut(s)	283, 426, 636, 754, 916
Hpy188III	TCNNGA	4 cut(s)	21, 249, 659, 869
Hpy8I	GTNNAC	5 cut(s)	283, 426, 636, 754, 916
HpyAV	CCTTC	6 cut(s)	24, 143, 155, 452, 580, 883
HpyCH4III	ACNGT	4 cut(s)	568, 815, 821, 1031
HpyCH4IV	ACGT	1 cut(s)	750
HpyF10VI	GCNNNNNNNGC	5 cut(s)	371, 883, 986, 1064, 1144
HpyF3I	CTNAG	3 cut(s)	26, 231, 745
HpySE526I	ACGT	1 cut(s)	750
Hsp92I	GRCGYC	1 cut(s)	750
Hsp92II	CATG	9 cut(s)	111, 353, 415, 446, 557, 611, 716, 984, 1075
HspAI	GCGC	1 cut(s)	1040
KpnI	GGTACC	1 cut(s)	85
LmnI	GCTCC	3 cut(s)	768, 836, 1099
LpnPI	CCDG	7 cut(s)	66, 75, 322, 596, 672, 979, 1101
LweI	GCATC	4 cut(s)	199, 352, 361, 658
MaeI	CTAG	3 cut(s)	21, 356, 579
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	5 cut(s)	533, 568, 815, 898, 997
MbiI	CCGCTC	1 cut(s)	1189
MboII	GAAGA	3 cut(s)	382, 443, 1102
MfeI	CAATTG	1 cut(s)	1012
MflI	RGATCY	2 cut(s)	199, 623
MhlI	GDGCHC	2 cut(s)	285, 1104
MluCI	AATT	8 cut(s)	191, 315, 326, 499, 719, 940, 972, 1012
MlyI	GAGTC	3 cut(s)	18, 239, 906
MmeI	TCCRAC	1 cut(s)	761
Mph1103I	ATGCAT	1 cut(s)	786
MroXI	GAANNNNTTC	2 cut(s)	132, 389
MseI	TTAA	4 cut(s)	144, 498, 612, 1020
MslI	CAYNNNNRTG	1 cut(s)	1014
MspA1I	CMGCKG	2 cut(s)	56, 1197
MunI	CAATTG	1 cut(s)	1012
Mva1269I	GAATGC	1 cut(s)	679
MwoI	GCNNNNNNNGC	5 cut(s)	371, 883, 986, 1064, 1144
NlaIII	CATG	9 cut(s)	111, 353, 415, 446, 557, 611, 716, 984, 1075
NlaIV	GGNNCC	1 cut(s)	83
NmuCI	GTSAC	3 cut(s)	533, 568, 898
NsiI	ATGCAT	1 cut(s)	786
NspI	RCATGY	3 cut(s)	353, 611, 984
OliI	CACNNNNGTG	1 cut(s)	1014
PceI	AGGCCT	1 cut(s)	989
PciI	ACATGT	1 cut(s)	607
PctI	GAATGC	1 cut(s)	679
PdmI	GAANNNNTTC	2 cut(s)	132, 389
PfeI	GAWTC	2 cut(s)	662, 768
PkrI	GCNGC	2 cut(s)	1166, 1196
PleI	GAGTC	3 cut(s)	18, 239, 905
PpsI	GAGTC	3 cut(s)	18, 239, 905
PscI	ACATGT	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	1104
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	876
PsrI	GAACNNNNNNTAC	2 cut(s)	401, 433
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	199, 623
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	4 cut(s)	83, 296, 348, 917
RsaNI	GTAC	4 cut(s)	82, 295, 347, 916
RseI	CAYNNNNRTG	1 cut(s)	1014
SacI	GAGCTC	1 cut(s)	1104
SaqAI	TTAA	4 cut(s)	144, 498, 612, 1020
SatI	GCNGC	2 cut(s)	1165, 1195
Sau96I	GGNCC	1 cut(s)	876
SchI	GAGTC	3 cut(s)	18, 239, 906
SduI	GDGCHC	2 cut(s)	285, 1104
SfaNI	GCATC	4 cut(s)	199, 352, 361, 658
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	1014
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	8 cut(s)	191, 315, 326, 499, 719, 940, 972, 1012
SseBI	AGGCCT	1 cut(s)	989
SsiI	CCGC	6 cut(s)	374, 440, 879, 1164, 1189, 1197
SspMI	CTAG	3 cut(s)	21, 356, 579
SstI	GAGCTC	1 cut(s)	1104
StuI	AGGCCT	1 cut(s)	989
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	568, 815, 821, 1031
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	5 cut(s)	72, 126, 136, 436, 544
TasI	AATT	8 cut(s)	191, 315, 326, 499, 719, 940, 972, 1012
TatI	WGTACW	2 cut(s)	294, 346
TauI	GCSGC	1 cut(s)	1167
TfiI	GAWTC	2 cut(s)	662, 768
Tru1I	TTAA	4 cut(s)	144, 498, 612, 1020
Tru9I	TTAA	4 cut(s)	144, 498, 612, 1020
TscAI	CASTG	2 cut(s)	1034, 1086
TseFI	GTSAC	3 cut(s)	533, 568, 898
TseI	GCWGC	1 cut(s)	1194
Tsp45I	GTSAC	3 cut(s)	533, 568, 898
TspDTI	ATGAA	5 cut(s)	6, 428, 851, 924, 1103
TspRI	CASTG	2 cut(s)	1034, 1086
VneI	GTGCAC	1 cut(s)	281
XapI	RAATTY	2 cut(s)	191, 326
XbaI	TCTAGA	1 cut(s)	20
XceI	RCATGY	3 cut(s)	353, 611, 984
XmiI	GTMKAC	1 cut(s)	425
XmnI	GAANNNNTTC	2 cut(s)	132, 389
XspI	CTAG	3 cut(s)	21, 356, 579
ZraI	GACGTC	1 cut(s)	751
Zsp2I	ATGCAT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.