Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Reverse (-)

14095263 .. 14101297

Gene Structure 6035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCAAATCAAATTCGAAACCCTTCTGCTGAACTCGAAGGCCTGTTAAGAGATCATACCTCGTATCAAAATCCGGAATTTTTGGCTGTATCAGGGCAACATAAGTACCATTTTTCTTCCAATCCTTCATACCCCGATGGCAGTGTTGAAAACCTTCGGTACATTAAATACGAACCAATCAGAGGGATAGAGTGCTTTGCCACGGGACAGATATTTGACAATTGTGGTGATGCTATTGAACATTGGAAGATTCAAAAAAGATATGACGCAAGATTTGTCATGCACCCACAGGAATGTGTAACGGTGAAACATGATTCGAAAGTTCTTTACATGTTGATTTTCCCCAAGGTTATCAGAGACATTAGCGTATGGATTGAAGAACATGCCAAAGGACAAGTTTCAGATGTGGATATGTGGGAGGTCCTGAAGAAGACTGAGAAAGCAATGAGATATTTATCGGTGGAATCACACTCACGTCGATCACATGGAAATCTCTTGAGAGGCATTGGTATAGCAGCGGATCTTAATGTTTACTTCTTCAACTTCGGCGCTGATAAAAAAGGATACAGTACTGATATCCAAGTTCTTGATGATATTCTCACATCCATTGAGCCTAAGTTGGTGGATCCTACAATTCAACATTGTGTCACTCGGTGGAAGTCCTTTCTCTCTGTGGCTTGTTCACTGTCTTCTTGTGCTACTACGCCACCTCTTTTTTGTCCCTTTGACTCTAACCATGTCAGAGTTATTCTTCATTATCCGGCATCTTGGGACGATGAAGAGAAACTTCGGTTCTTGGCAAACATTCATAAATTATGCACGGACAAGTGCCACCGGTATCCTTCCAATTTGATGAATGATAGCACATTTGATGCTGAGATGGCGAAAAAATATTCTAACTGGGGAAATCTCATAAGTGCCACAACTAATGCCTTATCCCAAGTTTACCAATTTGGTTGCCGCCAAGGAAATTATTTGAGAACTGATCGAGCGGGCAACTGGGTCTTATGGGAGGCATCAGTGGTTTTGTTTGCTCATAATAGTGTCAAGCACTATTCTGAGAGAGCCCAAGCGCATAACAATAAGCTATTAAACAATCCTTCTCTTACATATATGCCGGAGCTTATATCAAGTCAAGTTCTTGATGCATTATATCAAGAATTTTCCAAGTTTATTGAAGATATATATGAAGCTTTTTACAAGGCCTTGGAGAATGGATATAGGCATCACATGTTCAATCTTTCTCAGATATTGAGTGGAAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

48.65

Weight (kDa)

6.68

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1267
AccBSI	CCGCTC	1 cut(s)	992
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	3 cut(s)	518, 961, 992
AclWI	GGATC	3 cut(s)	528, 620, 633
AcsI	RAATTY	3 cut(s)	12, 77, 1160
AcuI	CTGAAG	1 cut(s)	446
AdeI	CACNNNGTG	1 cut(s)	654
AfaI	GTAC	3 cut(s)	107, 161, 571
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	2 cut(s)	330, 1230
AgeI	ACCGGT	1 cut(s)	834
AgsI	TTSAA	8 cut(s)	149, 239, 254, 377, 541, 638, 1178, 1237
AjiI	CACGTC	1 cut(s)	476
AluBI	AGCT	3 cut(s)	1087, 1123, 1193
AluI	AGCT	3 cut(s)	1087, 1123, 1193
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	528, 620, 633
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	2 cut(s)	40, 1203
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	12, 77, 1160
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AsiGI	ACCGGT	1 cut(s)	834
Asp700I	GAANNNNTTC	2 cut(s)	22, 153
AspLEI	GCGC	2 cut(s)	551, 1075
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	239, 316
AsuII	TTCGAA	2 cut(s)	16, 317
AvaII	GGWCC	1 cut(s)	421
BaeI	ACNNNNGTAYC	2 cut(s)	89, 122
BamHI	GGATCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	1069
BbsI	GAAGAC	2 cut(s)	437, 681
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	2 cut(s)	131, 874
BciVI	GTATCC	2 cut(s)	557, 849
BcoDI	GTCTC	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	552
BfuI	GTATCC	2 cut(s)	557, 849
BisI	GCNGC	2 cut(s)	516, 961
BlsI	GCNGC	2 cut(s)	517, 962
BmcAI	AGTACT	1 cut(s)	571
Bme18I	GGWCC	1 cut(s)	421
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	627
BmrI	ACTGGG	2 cut(s)	910, 1009
BmsI	GCATC	6 cut(s)	220, 773, 862, 1025, 1135, 1234
BmuI	ACTGGG	2 cut(s)	910, 1009
BpiI	GAAGAC	2 cut(s)	437, 681
Bpu14I	TTCGAA	2 cut(s)	16, 317
BpuEI	CTTGAG	1 cut(s)	517
BsaBI	GATNNNNATC	1 cut(s)	454
BsaJI	CCNNGG	4 cut(s)	201, 345, 964, 1206
BsaWI	WCCGGW	2 cut(s)	73, 834
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	834
Bse1I	ACTGG	2 cut(s)	905, 1004
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	454
BseAI	TCCGGA	1 cut(s)	73
BseDI	CCNNGG	4 cut(s)	201, 345, 964, 1206
BseGI	GGATG	1 cut(s)	602
BseJI	GATNNNNATC	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	4 cut(s)	426, 867, 1050, 1259
BseNI	ACTGG	2 cut(s)	905, 1004
BseXI	GCAGC	1 cut(s)	527
BshFI	GGCC	2 cut(s)	42, 1205
BshTI	ACCGGT	1 cut(s)	834
BsiSI	CCGG	4 cut(s)	74, 761, 835, 1118
BslFI	GGGAC	3 cut(s)	219, 705, 785
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	3 cut(s)	219, 705, 785
BsnI	GGCC	2 cut(s)	42, 1205
Bsp119I	TTCGAA	2 cut(s)	16, 317
Bsp1286I	GDGCHC	1 cut(s)	1069
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	5 cut(s)	52, 479, 520, 625, 985
BspACI	CCGC	3 cut(s)	518, 961, 992
BspANI	GGCC	2 cut(s)	42, 1205
BspCNI	CTCAG	4 cut(s)	427, 868, 1051, 1258
BspEI	TCCGGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	627
BspPI	GGATC	3 cut(s)	528, 620, 633
BspT104I	TTCGAA	2 cut(s)	16, 317
BsrBI	CCGCTC	1 cut(s)	992
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	905, 1004
BssAI	RCCGGY	1 cut(s)	834
BssECI	CCNNGG	4 cut(s)	201, 345, 964, 1206
BssMI	GATC	5 cut(s)	52, 479, 520, 625, 985
BssT1I	CCWWGG	3 cut(s)	345, 964, 1206
Bst4CI	ACNGT	3 cut(s)	304, 569, 687
Bst6I	CTCTTC	1 cut(s)	774
BstBI	TTCGAA	2 cut(s)	16, 317
BstC8I	GCNNGC	1 cut(s)	994
BstDEI	CTNAG	5 cut(s)	435, 615, 876, 1059, 1245
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	602
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	2 cut(s)	551, 1075
BstKTI	GATC	5 cut(s)	55, 482, 523, 628, 988
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	5 cut(s)	52, 479, 520, 625, 985
BstMWI	GCNNNNNNNGC	1 cut(s)	881
BstNSI	RCATGY	3 cut(s)	334, 386, 1234
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	2 cut(s)	437, 681
BstX2I	RGATCY	2 cut(s)	520, 625
BstYI	RGATCY	2 cut(s)	520, 625
BsuI	GTATCC	2 cut(s)	557, 849
BsuRI	GGCC	2 cut(s)	42, 1205
BtgI	CCRYGG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	3 cut(s)	148, 683, 1026
Cac8I	GCNNGC	1 cut(s)	994
CfoI	GCGC	2 cut(s)	551, 1075
Cfr10I	RCCGGY	1 cut(s)	834
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	3 cut(s)	106, 160, 570
CspAI	ACCGGT	1 cut(s)	834
CviAII	CATG	7 cut(s)	280, 311, 331, 383, 485, 737, 1231
CviJI	RGCY	9 cut(s)	42, 86, 613, 677, 1067, 1087, 1123, 1193, 1205
CviKI_1	RGCY	9 cut(s)	42, 86, 613, 677, 1067, 1087, 1123, 1193, 1205
CviQI	GTAC	3 cut(s)	106, 160, 570
DdeI	CTNAG	5 cut(s)	435, 615, 876, 1059, 1245
DpnI	GATC	5 cut(s)	54, 481, 522, 627, 987
DpnII	GATC	5 cut(s)	52, 479, 520, 625, 985
DraIII	CACNNNGTG	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco130I	CCWWGG	3 cut(s)	345, 964, 1206
Eco147I	AGGCCT	2 cut(s)	42, 1205
Eco24I	GRGCYC	1 cut(s)	1069
Eco32I	GATATC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	3 cut(s)	345, 964, 1206
EcoT22I	ATGCAT	1 cut(s)	1150
EcoT38I	GRGCYC	1 cut(s)	1069
ErhI	CCWWGG	3 cut(s)	345, 964, 1206
FaeI	CATG	7 cut(s)	283, 314, 334, 386, 488, 740, 1234
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	3 cut(s)	219, 705, 785
FatI	CATG	7 cut(s)	279, 310, 330, 382, 484, 736, 1230
FauI	CCCGC	1 cut(s)	985
Fnu4HI	GCNGC	2 cut(s)	516, 961
FokI	GGATG	1 cut(s)	589
FriOI	GRGCYC	1 cut(s)	1069
Fsp4HI	GCNGC	2 cut(s)	516, 961
GlaI	GCGC	2 cut(s)	550, 1074
GluI	GCNGC	2 cut(s)	516, 961
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	42, 1205
HapII	CCGG	4 cut(s)	74, 761, 835, 1118
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	551, 1075
Hin1II	CATG	7 cut(s)	283, 314, 334, 386, 488, 740, 1234
Hin6I	GCGC	2 cut(s)	549, 1073
HinP1I	GCGC	2 cut(s)	549, 1073
HindIII	AAGCTT	1 cut(s)	1191
HinfI	GANTC	4 cut(s)	250, 314, 464, 728
HpaII	CCGG	4 cut(s)	74, 761, 835, 1118
HphI	GGTGA	2 cut(s)	239, 316
Hpy166II	GTNNAC	3 cut(s)	532, 683, 946
Hpy188I	TCNGA	6 cut(s)	182, 356, 403, 743, 1060, 1248
Hpy188III	TCNNGA	6 cut(s)	74, 424, 496, 587, 1142, 1157
Hpy8I	GTNNAC	3 cut(s)	532, 683, 946
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	6 cut(s)	32, 33, 135, 164, 852, 1110
HpyCH4III	ACNGT	3 cut(s)	304, 569, 687
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	3 cut(s)	283, 819, 1148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	881
HpyF3I	CTNAG	5 cut(s)	435, 615, 876, 1059, 1245
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	7 cut(s)	283, 314, 334, 386, 488, 740, 1234
HspAI	GCGC	2 cut(s)	549, 1073
Kpn2I	TCCGGA	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	52, 479, 520, 625, 985
LmnI	GCTCC	1 cut(s)	1120
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	6 cut(s)	220, 773, 862, 1025, 1135, 1234
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	2 cut(s)	298, 646
MalI	GATC	5 cut(s)	54, 481, 522, 627, 987
MbiI	CCGCTC	1 cut(s)	992
MboI	GATC	5 cut(s)	52, 479, 520, 625, 985
MfeI	CAATTG	1 cut(s)	220
MflI	RGATCY	2 cut(s)	520, 625
MhlI	GDGCHC	1 cut(s)	1069
MluCI	AATT	9 cut(s)	12, 77, 220, 633, 812, 847, 950, 970, 1160
MlyI	GAGTC	1 cut(s)	722
MnlI	CCTC	6 cut(s)	70, 176, 412, 494, 720, 1006
Mph1103I	ATGCAT	1 cut(s)	1150
MroI	TCCGGA	1 cut(s)	73
MroXI	GAANNNNTTC	2 cut(s)	22, 153
MseI	TTAA	4 cut(s)	47, 165, 525, 1091
MslI	CAYNNNNRTG	2 cut(s)	292, 1041
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	4 cut(s)	74, 761, 835, 1118
MunI	CAATTG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	881
NdeII	GATC	5 cut(s)	52, 479, 520, 625, 985
NlaIII	CATG	7 cut(s)	283, 314, 334, 386, 488, 740, 1234
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	1150
NspI	RCATGY	3 cut(s)	334, 386, 1234
NspV	TTCGAA	2 cut(s)	16, 317
PceI	AGGCCT	2 cut(s)	42, 1205
PciI	ACATGT	2 cut(s)	330, 1230
PdmI	GAANNNNTTC	2 cut(s)	22, 153
PfeI	GAWTC	3 cut(s)	250, 314, 464
PinAI	ACCGGT	1 cut(s)	834
PkrI	GCNGC	2 cut(s)	517, 962
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	2 cut(s)	330, 1230
PsiI	TTATAA	1 cut(s)	1267
Psp5II	RGGWCCY	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	421
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	520, 625
RsaI	GTAC	3 cut(s)	107, 161, 571
RsaNI	GTAC	3 cut(s)	106, 160, 570
RseI	CAYNNNNRTG	2 cut(s)	292, 1041
SaqAI	TTAA	4 cut(s)	47, 165, 525, 1091
SatI	GCNGC	2 cut(s)	516, 961
Sau3AI	GATC	5 cut(s)	52, 479, 520, 625, 985
Sau96I	GGNCC	1 cut(s)	421
ScaI	AGTACT	1 cut(s)	571
SchI	GAGTC	1 cut(s)	722
SduI	GDGCHC	1 cut(s)	1069
SetI	ASST	9 cut(s)	62, 156, 351, 423, 478, 712, 1089, 1125, 1195
SfaNI	GCATC	6 cut(s)	220, 773, 862, 1025, 1135, 1234
SfuI	TTCGAA	2 cut(s)	16, 317
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	292, 1041
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
Sse9I	AATT	9 cut(s)	12, 77, 220, 633, 812, 847, 950, 970, 1160
SseBI	AGGCCT	2 cut(s)	42, 1205
SsiI	CCGC	3 cut(s)	518, 961, 992
SspI	AATATT	1 cut(s)	893
StuI	AGGCCT	2 cut(s)	42, 1205
StyI	CCWWGG	3 cut(s)	345, 964, 1206
TaaI	ACNGT	3 cut(s)	304, 569, 687
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	5 cut(s)	16, 36, 317, 478, 988
TasI	AATT	9 cut(s)	12, 77, 220, 633, 812, 847, 950, 970, 1160
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	1 cut(s)	963
TfiI	GAWTC	3 cut(s)	250, 314, 464
Tru1I	TTAA	4 cut(s)	47, 165, 525, 1091
Tru9I	TTAA	4 cut(s)	47, 165, 525, 1091
TscAI	CASTG	3 cut(s)	148, 690, 1026
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	6 cut(s)	117, 743, 792, 797, 869, 1203
TspGWI	ACGGA	1 cut(s)	836
TspRI	CASTG	3 cut(s)	148, 690, 1026
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	3 cut(s)	12, 77, 1160
XceI	RCATGY	3 cut(s)	334, 386, 1234
XmnI	GAANNNNTTC	2 cut(s)	22, 153
ZrmI	AGTACT	1 cut(s)	571
Zsp2I	ATGCAT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.