Rh6AG035600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008103
Physical Location & Seq
Forward (+)
4602891 .. 4611077
8187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG035600.1

Sequence Viewer

Length: 1404 bp
ATGGCAAATCGAATTCGAAACCCTTCAGCTGAACTCAAACACCTGTTAAAAGATCATACCTCATATCAGAATCCAGAATTTTTGGCTGTATCAGGGGAACATAAGTACCATTTTTTTTCCAGTCCTTCATATCCCGATGGCAGCGTTGAAAATCTTCGATACATTAAATACGAATCAATCGTAGGGATAGAGCGTTTTGCCACGGGACAGATGTTTGACAATCGTGATGATGCTATTAAACATTGGAAGATTCAAGAGAGATATGACGCAAGATTTGTCATGCACCCACAGGATTGTGTAACAGTGGAACATAATTCAAAAGTCCTTTACATTTTGATTTTCCCCATGGTTATTAGAGACATTAGCGTATGGATTGAAGAACATGCTAAAGGACACGTCTCAGATGTGGATATGTGGGAGGTCCTGAAGAAGATTGAGAAAGCAATGAGATATTTATCTGTGGAGTCACACTCACATCGTTCACATGGAAATCTCTTAAGAGGCATTGGTATAGCAGCGGATCTTAATGTTTACTTCTTCAACTTTGGTGCTGATAAAATAGGATACAGAACTGATATTCAAGTGTTTGATTATATTCTTACTTCCATTGGCCCCCAAATTAGGCATCCTACAATTCAACATTGTGTCACTAGGTGGAAGTCGTTTCTCACTTTGGCTTGTTCGCTGTCTACGTCACCTTTTTTTCGTCCCTATGACGCTGACCATGTCAGAGTTATTCTTTATTATCCGGCGTCTTGGGACGATGAAGAGAAACTTCGGTTCCTGGCAAACATTCATAAATTATGCACGGACAAGTGCACTCGGCGTAATTCCAATTTGATTGTTAACAAAACATTTGATGCTGAGATGGTGAAAAAATATTCTGACTGGGGGAAGCTCATAAGTGCCACAACTAATGCCTTATCTCAAGTTTACAAATTTGGTCTCCGCCAAGGAAACTATTTGAGAACTACTTCAGCGGGTAACAAGGTCTTAAGCGAGGCATCAGTGGTCGTGTTTGCCCACAATAGTGTTAAGCACTATTCTGAAAGAGTGCAATTTCATAACAATCAGCTAAACAATAATCCTTCTCTTAGATATATGCGGGAGCTTATATCAAGTGAAGTCCTTGATGCATTATATAAAGTTGAGTATCTTTTGAATTCCTCTCCTGAACCAGACCCTGTTGTTGATGACGACCCTCCATCTATTACTATCTCGGCACTTTACAGCAATCTCTTTTGGCAATGTGTTTTCTGCGCTGGGAAACTGAGGTTTTATAGAAGTATGAATGATGAGACAATTGATGCATCCATGGAAGAAAGTGGAGAAGCTATGGCAGCAAGTGTACATGGATCAGGTTTCAACGAGAATGCAAATCTGTGCCAACCAATAGTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

467

Amino Acids

53.7

Weight (kDa)

6.58

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 689
AciI CCGC 4 cut(s) 518, 949, 980, 1105
AclWI GGATC 2 cut(s) 528, 1363
AcsI RAATTY 4 cut(s) 12, 77, 938, 1162
AcuI CTGAAG 3 cut(s) 9, 446, 960
AcyI GRCGYC 1 cut(s) 752
AdeI CACNNNGTG 1 cut(s) 654
AfaI GTAC 2 cut(s) 107, 1350
AfiI CCNNNNNNNGG 1 cut(s) 621
AflII CTTAAG 2 cut(s) 496, 994
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 9 cut(s) 149, 254, 318, 377, 541, 581, 638, 1162, 1366
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 1 cut(s) 783
AleI CACNNNNGTG 1 cut(s) 1029
AluBI AGCT 5 cut(s) 29, 898, 1075, 1111, 1334
AluI AGCT 5 cut(s) 29, 898, 1075, 1111, 1334
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 4 cut(s) 351, 403, 950, 1292
Alw44I GTGCAC 1 cut(s) 817
AlwI GGATC 2 cut(s) 528, 1363
AlwNI CAGNNNCTG 1 cut(s) 1184
AoxI GGCC 1 cut(s) 610
ApaLI GTGCAC 1 cut(s) 817
ApeKI GCWGC 3 cut(s) 141, 515, 1340
ApoI RAATTY 4 cut(s) 12, 77, 938, 1162
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 3 cut(s) 22, 153, 973
AspLEI GCGC 1 cut(s) 1262
AspS9I GGNCC 2 cut(s) 421, 611
AsuHPI GGTGA 2 cut(s) 687, 883
AsuII TTCGAA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 821
BaeI ACNNNNGTAYC 2 cut(s) 89, 122
Bbv12I GWGCWC 1 cut(s) 821
BbvI GCAGC 3 cut(s) 153, 527, 1352
BccI CCATC 3 cut(s) 131, 862, 1213
BciT130I CCWGG 1 cut(s) 785
BciVI GTATCC 1 cut(s) 557
BcoDI GTCTC 4 cut(s) 351, 403, 950, 1292
BfaI CTAG 1 cut(s) 651
BfrI CTTAAG 2 cut(s) 496, 994
BfuI GTATCC 1 cut(s) 557
BisI GCNGC 3 cut(s) 142, 516, 1341
BlsI GCNGC 3 cut(s) 143, 517, 1342
Bme1390I CCNGG 1 cut(s) 785
Bme18I GGWCC 1 cut(s) 421
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 421, 611
BmiI GGNNCC 2 cut(s) 613, 782
BmrFI CCNGG 1 cut(s) 785
BmrI ACTGGG 1 cut(s) 898
BmsI GCATC 7 cut(s) 220, 634, 850, 1013, 1123, 1297, 1319
BmuI ACTGGG 1 cut(s) 898
BplI GAGNNNNNCTC 2 cut(s) 455, 487
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 912
BsaBI GATNNNNATC 1 cut(s) 454
BsaHI GRCGYC 1 cut(s) 752
BsaI GGTCTC 1 cut(s) 950
BsaJI CCNNGG 4 cut(s) 201, 345, 952, 1314
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 2 cut(s) 120, 893
Bse3DI GCAATG 2 cut(s) 450, 1253
Bse8I GATNNNNATC 1 cut(s) 454
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 4 cut(s) 201, 345, 952, 1314
BseGI GGATG 2 cut(s) 625, 1310
BseJI GATNNNNATC 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMI GCAATG 2 cut(s) 450, 1253
BseMII CTCAG 3 cut(s) 414, 855, 1262
BseNI ACTGG 2 cut(s) 120, 893
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 3 cut(s) 153, 527, 1352
BseYI CCCAGC 1 cut(s) 1262
BshFI GGCC 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 821
BsiSI CCGG 1 cut(s) 749
BslFI GGGAC 3 cut(s) 219, 693, 773
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 4 cut(s) 351, 403, 950, 1292
BsmBI CGTCTC 1 cut(s) 403
BsmFI GGGAC 3 cut(s) 219, 693, 773
BsmI GAATGC 1 cut(s) 1378
BsnI GGCC 1 cut(s) 612
Bso31I GGTCTC 1 cut(s) 950
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 821
Bsp1407I TGTACA 1 cut(s) 1348
Bsp143I GATC 3 cut(s) 52, 520, 1355
Bsp19I CCATGG 2 cut(s) 345, 1314
BspACI CCGC 4 cut(s) 518, 949, 980, 1105
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 3 cut(s) 413, 856, 1263
BspLI GGNNCC 2 cut(s) 613, 782
BspPI GGATC 2 cut(s) 528, 1363
BspT104I TTCGAA 1 cut(s) 16
BspTI CTTAAG 2 cut(s) 496, 994
BspTNI GGTCTC 1 cut(s) 950
BsrDI GCAATG 2 cut(s) 450, 1253
BsrGI TGTACA 1 cut(s) 1348
BsrI ACTGG 2 cut(s) 120, 893
BssECI CCNNGG 4 cut(s) 201, 345, 952, 1314
BssMI GATC 3 cut(s) 52, 520, 1355
BssNI GRCGYC 1 cut(s) 752
BssT1I CCWWGG 3 cut(s) 345, 952, 1314
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 762
BstACI GRCGYC 1 cut(s) 752
BstAFI CTTAAG 2 cut(s) 496, 994
BstAUI TGTACA 1 cut(s) 1348
BstBI TTCGAA 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 400, 864, 1094, 1271
BstDSI CCRYGG 3 cut(s) 201, 345, 1314
BstF5I GGATG 2 cut(s) 625, 1310
BstHHI GCGC 1 cut(s) 1262
BstKTI GATC 3 cut(s) 55, 523, 1358
BstMAI GTCTC 4 cut(s) 351, 403, 950, 1292
BstMBI GATC 3 cut(s) 52, 520, 1355
BstMWI GCNNNNNNNGC 1 cut(s) 1340
BstNI CCWGG 1 cut(s) 785
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 821
BstV1I GCAGC 3 cut(s) 153, 527, 1352
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 1 cut(s) 612
BtgI CCRYGG 3 cut(s) 201, 345, 1314
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 2 cut(s) 625, 1310
BtsIMutI CAGTG 2 cut(s) 309, 1014
CaiI CAGNNNCTG 1 cut(s) 1184
CfoI GCGC 1 cut(s) 1262
Cfr13I GGNCC 2 cut(s) 421, 611
CseI GACGC 3 cut(s) 275, 725, 741
Csp6I GTAC 2 cut(s) 106, 1349
CviAII CATG 7 cut(s) 280, 346, 383, 485, 725, 1315, 1352
CviJI RGCY 8 cut(s) 29, 86, 612, 677, 898, 1075, 1111, 1334
CviKI_1 RGCY 8 cut(s) 29, 86, 612, 677, 898, 1075, 1111, 1334
CviQI GTAC 2 cut(s) 106, 1349
DdeI CTNAG 4 cut(s) 400, 864, 1094, 1271
DpnI GATC 3 cut(s) 54, 522, 1357
DpnII GATC 3 cut(s) 52, 520, 1355
DraIII CACNNNGTG 1 cut(s) 654
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
EciI GGCGGA 1 cut(s) 938
Eco130I CCWWGG 3 cut(s) 345, 952, 1314
Eco31I GGTCTC 1 cut(s) 950
Eco47I GGWCC 1 cut(s) 421
Eco57I CTGAAG 3 cut(s) 9, 446, 960
EcoO109I RGGNCCY 1 cut(s) 421
EcoRI GAATTC 2 cut(s) 12, 1162
EcoRII CCWGG 1 cut(s) 783
EcoT14I CCWWGG 3 cut(s) 345, 952, 1314
EcoT22I ATGCAT 2 cut(s) 1138, 1312
ErhI CCWWGG 3 cut(s) 345, 952, 1314
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 7 cut(s) 283, 349, 386, 488, 728, 1318, 1355
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 3 cut(s) 219, 693, 773
FatI CATG 7 cut(s) 279, 345, 382, 484, 724, 1314, 1351
FauI CCCGC 2 cut(s) 973, 1098
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 3 cut(s) 142, 516, 1341
FokI GGATG 2 cut(s) 612, 1297
Fsp4HI GCNGC 3 cut(s) 142, 516, 1341
FspBI CTAG 1 cut(s) 651
GlaI GCGC 1 cut(s) 1261
GluI GCNGC 3 cut(s) 142, 516, 1341
GsaI CCCAGC 1 cut(s) 1266
HaeIII GGCC 1 cut(s) 612
HapII CCGG 1 cut(s) 749
HgaI GACGC 3 cut(s) 275, 725, 741
HhaI GCGC 1 cut(s) 1262
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 7 cut(s) 283, 349, 386, 488, 728, 1318, 1355
Hin6I GCGC 1 cut(s) 1260
HinP1I GCGC 1 cut(s) 1260
HincII GTYRAC 1 cut(s) 847
HindII GTYRAC 1 cut(s) 847
HinfI GANTC 4 cut(s) 70, 173, 250, 464
HpaI GTTAAC 1 cut(s) 847
HpaII CCGG 1 cut(s) 749
HphI GGTGA 2 cut(s) 687, 883
Hpy166II GTNNAC 7 cut(s) 482, 532, 690, 819, 847, 934, 1349
Hpy188I TCNGA 5 cut(s) 69, 403, 731, 886, 1048
Hpy188III TCNNGA 6 cut(s) 74, 134, 224, 254, 424, 1172
Hpy8I GTNNAC 7 cut(s) 482, 532, 690, 819, 847, 934, 1349
HpyAV CCTTC 3 cut(s) 33, 135, 1098
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 396, 692
HpyCH4V TGCA 7 cut(s) 283, 807, 819, 1057, 1136, 1310, 1376
HpyF10VI GCNNNNNNNGC 1 cut(s) 1340
HpyF3I CTNAG 4 cut(s) 400, 864, 1094, 1271
HpySE526I ACGT 2 cut(s) 396, 692
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 7 cut(s) 283, 349, 386, 488, 728, 1318, 1355
HspAI GCGC 1 cut(s) 1260
KspAI GTTAAC 1 cut(s) 847
Kzo9I GATC 3 cut(s) 52, 520, 1355
LmnI GCTCC 1 cut(s) 1108
Lsp1109I GCAGC 3 cut(s) 153, 527, 1352
LweI GCATC 7 cut(s) 220, 634, 850, 1013, 1123, 1297, 1319
MaeI CTAG 1 cut(s) 651
MaeII ACGT 2 cut(s) 396, 692
MaeIII GTNAC 6 cut(s) 298, 465, 646, 693, 983, 1396
MalI GATC 3 cut(s) 54, 522, 1357
MboI GATC 3 cut(s) 52, 520, 1355
MboII GAAGA 8 cut(s) 146, 259, 389, 439, 442, 529, 779, 1331
MfeI CAATTG 1 cut(s) 1302
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 821
MlyI GAGTC 1 cut(s) 473
MnlI CCTC 7 cut(s) 70, 412, 494, 994, 1177, 1212, 1266
Mph1103I ATGCAT 2 cut(s) 1138, 1312
MroXI GAANNNNTTC 3 cut(s) 22, 153, 973
MseI TTAA 8 cut(s) 47, 165, 237, 497, 525, 846, 995, 1035
MslI CAYNNNNRTG 1 cut(s) 1029
MspA1I CMGCKG 3 cut(s) 29, 518, 980
MspCI CTTAAG 2 cut(s) 496, 994
MspI CCGG 1 cut(s) 749
MspR9I CCNGG 1 cut(s) 785
MunI CAATTG 1 cut(s) 1302
Mva1269I GAATGC 1 cut(s) 1378
MvaI CCWGG 1 cut(s) 785
MwoI GCNNNNNNNGC 1 cut(s) 1340
NcoI CCATGG 2 cut(s) 345, 1314
NdeII GATC 3 cut(s) 52, 520, 1355
NlaIII CATG 7 cut(s) 283, 349, 386, 488, 728, 1318, 1355
NlaIV GGNNCC 2 cut(s) 613, 782
NmeAIII GCCGAG 2 cut(s) 802, 1199
NmuCI GTSAC 4 cut(s) 465, 646, 693, 1396
NsiI ATGCAT 2 cut(s) 1138, 1312
NspI RCATGY 1 cut(s) 386
NspV TTCGAA 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 1029
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 689
PctI GAATGC 1 cut(s) 1378
PdmI GAANNNNTTC 3 cut(s) 22, 153, 973
PfeI GAWTC 3 cut(s) 70, 173, 250
PflFI GACNNNGTC 1 cut(s) 725
PkrI GCNGC 3 cut(s) 143, 517, 1342
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 783
PspFI CCCAGC 1 cut(s) 1262
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 2 cut(s) 613, 782
PspPI GGNCC 2 cut(s) 421, 611
PspPPI RGGWCCY 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 1184
PsuI RGATCY 1 cut(s) 520
PsyI GACNNNGTC 1 cut(s) 725
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 107, 1350
RsaNI GTAC 2 cut(s) 106, 1349
RseI CAYNNNNRTG 1 cut(s) 1029
SaqAI TTAA 8 cut(s) 47, 165, 237, 497, 525, 846, 995, 1035
SatI GCNGC 3 cut(s) 142, 516, 1341
Sau3AI GATC 3 cut(s) 52, 520, 1355
Sau96I GGNCC 2 cut(s) 421, 611
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 1 cut(s) 821
SfaNI GCATC 7 cut(s) 220, 634, 850, 1013, 1123, 1297, 1319
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 1029
SmlI CTYRAG 3 cut(s) 496, 927, 994
SmoI CTYRAG 3 cut(s) 496, 927, 994
SsiI CCGC 4 cut(s) 518, 949, 980, 1105
SspI AATATT 1 cut(s) 881
SspMI CTAG 1 cut(s) 651
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 3 cut(s) 345, 952, 1314
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 2 cut(s) 399, 695
TaqI TCGA 3 cut(s) 10, 16, 157
TatI WGTACW 1 cut(s) 1348
TfiI GAWTC 3 cut(s) 70, 173, 250
Tru1I TTAA 8 cut(s) 47, 165, 237, 497, 525, 846, 995, 1035
Tru9I TTAA 8 cut(s) 47, 165, 237, 497, 525, 846, 995, 1035
TscAI CASTG 2 cut(s) 309, 1014
TseFI GTSAC 4 cut(s) 465, 646, 693, 1396
TseI GCWGC 3 cut(s) 141, 515, 1340
Tsp45I GTSAC 4 cut(s) 465, 646, 693, 1396
TspDTI ATGAA 5 cut(s) 117, 780, 785, 1052, 1304
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 2 cut(s) 309, 1014
Tth111I GACNNNGTC 1 cut(s) 725
Vha464I CTTAAG 2 cut(s) 496, 994
VneI GTGCAC 1 cut(s) 817
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 4 cut(s) 12, 77, 938, 1162
XceI RCATGY 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 689
XmnI GAANNNNTTC 3 cut(s) 22, 153, 973
XspI CTAG 1 cut(s) 651
Zsp2I ATGCAT 2 cut(s) 1138, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.