Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Reverse (-)

32959019 .. 32960176

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35742.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCTAGAAGGCTCCGGGATTAGAAACCGTGTTAAGAGGTGGAAATCATTTCTGTCCACATCTTGTTTGGATGTTAAACCAGGCGACCTCCCATTAAATTCAAAAATCTCTCCTCTCTATTGTCGCACCCATGTAAAATTGGTGTTCAATTATCCAATTGTGTGGGATTTTGAGAACAAGCGCCGGTTCCTGGCAAATATGTATATGCTGTGCAGAGACCTCTCTGTAGCCCACAATTTGTTGAAGAAGGAAGAATTTAGAAGCCATCTTTGTGGTTGTGCTGACTATTCTAATTGGCCTGCCAAGCTGCCCAGCGGAGTTAGTGTTCTAAAAGAAGTTTACCAATTTGGTAGTAGTAAGGGCCAATACACATCAGTGGAATCCATCGTTATCTTTGCAGACGATTGTGTAAGACACCATTATCAGAGCACACAAAGGTATAATAAACCTGGACCTACCGTAACACTGCCAGAGGTTAAATCAAGTGATATCTTTGATGAGTTGTATACACTTCCCCTATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

20.18

Weight (kDa)

8.86

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	97, 254
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	102, 148, 244
AjnI	CCWGG	3 cut(s)	79, 189, 448
AleI	CACNNNNGTG	1 cut(s)	374
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	210
AoxI	GGCC	2 cut(s)	296, 361
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	2 cut(s)	97, 254
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	361, 452
AsuC2I	CCSGG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	273, 392
BciT130I	CCWGG	3 cut(s)	81, 191, 450
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	4 cut(s)	16, 81, 191, 450
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	361, 452
BmiI	GGNNCC	2 cut(s)	13, 188
BmrFI	CCNGG	4 cut(s)	16, 81, 191, 450
BpuMI	CCSGG	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	81, 191, 450
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	294
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	298, 363
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	15, 184
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	298, 363
Bso31I	GGTCTC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	431
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	298, 363
BspLI	GGNNCC	2 cut(s)	13, 188
BspTNI	GGTCTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssNAI	GTATAC	1 cut(s)	507
Bst1107I	GTATAC	1 cut(s)	507
Bst2UI	CCWGG	3 cut(s)	81, 191, 450
Bst4CI	ACNGT	2 cut(s)	29, 460
BstC8I	GCNNGC	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	3 cut(s)	81, 191, 450
BstSCI	CCNGG	4 cut(s)	14, 79, 189, 448
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	294
BstXI	CCANNNNNNTGG	2 cut(s)	162, 272
BstZ17I	GTATAC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	298, 363
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	381, 464
Cac8I	GCNNGC	1 cut(s)	300
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	361, 452
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	6 cut(s)	12, 230, 264, 298, 307, 363
CviKI_1	RGCY	6 cut(s)	12, 230, 264, 298, 307, 363
Eco31I	GGTCTC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	452
EcoRII	CCWGG	3 cut(s)	79, 189, 448
EcoRV	GATATC	1 cut(s)	490
FaeI	CATG	1 cut(s)	134
FaiI	YATR	6 cut(s)	132, 200, 204, 206, 441, 507
FatI	CATG	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	308
GsaI	CCCAGC	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	298, 363
HapII	CCGG	2 cut(s)	15, 184
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	2 cut(s)	15, 184
Hpy166II	GTNNAC	3 cut(s)	57, 340, 507
Hpy188I	TCNGA	1 cut(s)	426
Hpy8I	GTNNAC	3 cut(s)	57, 340, 507
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	29, 460
HpyCH4V	TGCA	2 cut(s)	213, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	460
MboII	GAAGA	2 cut(s)	256, 263
MfeI	CAATTG	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	8 cut(s)	97, 137, 148, 156, 235, 254, 292, 344
MnlI	CCTC	5 cut(s)	30, 98, 123, 230, 466
MseI	TTAA	4 cut(s)	33, 75, 95, 477
MslI	CAYNNNNRTG	2 cut(s)	270, 374
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	15, 184
MspR9I	CCNGG	4 cut(s)	16, 81, 191, 450
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	3 cut(s)	81, 191, 450
MwoI	GCNNNNNNNGC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	16
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	2 cut(s)	13, 188
OliI	CACNNNNGTG	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	309
Psp6I	CCWGG	3 cut(s)	79, 189, 448
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	3 cut(s)	79, 189, 448
PspN4I	GGNNCC	2 cut(s)	13, 188
PspPI	GGNCC	2 cut(s)	361, 452
RseI	CAYNNNNRTG	2 cut(s)	270, 374
SaqAI	TTAA	4 cut(s)	33, 75, 95, 477
SatI	GCNGC	1 cut(s)	308
Sau96I	GGNCC	2 cut(s)	361, 452
ScrFI	CCNGG	4 cut(s)	16, 81, 191, 450
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	8 cut(s)	41, 90, 222, 309, 440, 451, 457, 477
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	2 cut(s)	270, 374
Sse9I	AATT	8 cut(s)	97, 137, 148, 156, 235, 254, 292, 344
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	4 cut(s)	14, 79, 189, 448
TaaI	ACNGT	2 cut(s)	29, 460
TasI	AATT	8 cut(s)	97, 137, 148, 156, 235, 254, 292, 344
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	4 cut(s)	33, 75, 95, 477
Tru9I	TTAA	4 cut(s)	33, 75, 95, 477
TscAI	CASTG	2 cut(s)	381, 471
TseI	GCWGC	1 cut(s)	307
TspRI	CASTG	2 cut(s)	381, 471
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	97, 254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	506
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.