Rroxscaffold_2G00153640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008103
Physical Location & Seq
Reverse (-)
90424921 .. 90426195
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153640.1

Sequence Viewer

Length: 1275 bp
ATGGTTCGAAATCCTTCATCTAAACTCGAAATCGAGTTGGAAAAGCGTAGCAAGACGTTTCGAGATGACCCCGTATTGATAGAACATCGGTGCTATTTCTCTGCCAATCCTCCCAAATGTGTTAACATTAATCTTGAACGTCATCTTCGATACATTAAACATCAACCCTTCGTAGGGATGGATAGATTCGCAACTATACAAGAATTCCAAAATCATCTCGATGCTGAAAGACATTGGGAGATTCAAAATAGCTATGACCCAAATTATCTCATACATCCTGCTGAATATGTGAAACACCAAGACAAGTACGTGCTGATTTTCCCAAAAATTATTAGAGACTTCAATGGCTGCTGGGTAAATGAACATGCTAAGGGTCGAGTCTCAGACGCAGATATGTGGAAGATATTGAAGAAGATTGGAAAAAACATGAGATATTTGTCCACAGAAGTACAATCAAAACGACCGCATGGAAATCTCCGCAGAGGTGTGGGGATAACAACCGAGCTTGAAACTTTATTTCTTAATTTAGGTGCTGTTAAACATGCAATGATATACTATGAAGATGTTAAGGACTTGCATGGATTTCTTACGGTCATTTTACCTAGTTTGAGGGACTTGTCAATAAGAAGACATGTTGAGAGGTGGATGACATTTTTGTCCGATAGTTGTTTACAAGTTACACCAGATTCAACTCCAGTAGCTGATTCAGATATCCATCCTCCCTATCATAATCTCCACCATGTTAGATTGATTGTCAATTATCCAAGCTCCTGGGACGTCAATGAAGAACGCCAATTCTTGTCAAATATGCATAAACTATGCACGGACATGAGCAAGTTCAATCCTGCCAATTTGCTATCAAGTGAAACTTTTGAAAATCATCTCGTGAATTGTTATTCTCAGTGGAACGAGTGCTTTACTACGGGCAAAAATATTAGCGGCTTAAATGAAGTCTATCAAACTGGTGTTCGTGAAGGAAGTTACGTGGACAAGTCTACTGGGATACTATGCGTGCCAACCATTGTTATTTTTACCCAGAATTGTGTCAAACACCACACGGAAAGAGTGCAAGAGCATAACATTAGACATCATTCTGAAGATGTTAGGCATCCTGACCACATGGCATACCTTACATCAAGTGAAATCCTTGCCGAACTAGATAAAGAATTTCCCCATTTGATTGAGAATATTTATCGAGCCTATTACAAAGCCGTAGCGAGAGGCTACAAACATCCTAACTTCAGTGTTGAGCAAATATTACCCAAAGTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

49.7

Weight (kDa)

7.15

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1273
AasI GACNNNNNNGTC 1 cut(s) 655
AatII GACGTC 1 cut(s) 780
AccI GTMKAC 1 cut(s) 995
AciI CCGC 3 cut(s) 464, 478, 939
AcsI RAATTY 2 cut(s) 203, 1166
AcuI CTGAAG 2 cut(s) 1116, 1225
AcyI GRCGYC 1 cut(s) 777
AfaI GTAC 2 cut(s) 308, 450
AfiI CCNNNNNNNGG 2 cut(s) 173, 174
AflIII ACRYGT 1 cut(s) 631
AgsI TTSAA 8 cut(s) 137, 245, 343, 409, 509, 690, 841, 875
AjnI CCWGG 1 cut(s) 770
AluBI AGCT 4 cut(s) 252, 505, 701, 768
AluI AGCT 4 cut(s) 252, 505, 701, 768
Alw26I GTCTC 2 cut(s) 330, 385
AlwNI CAGNNNCTG 1 cut(s) 701
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 2 cut(s) 203, 1166
AseI ATTAAT 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 13
AsuII TTCGAA 1 cut(s) 7
BauI CACGAG 1 cut(s) 884
BbsI GAAGAC 1 cut(s) 634
BbvI GCAGC 1 cut(s) 335
BccI CCATC 2 cut(s) 172, 723
BceAI ACGGC 1 cut(s) 1196
BciT130I CCWGG 1 cut(s) 772
BciVI GTATCC 1 cut(s) 996
BcoDI GTCTC 2 cut(s) 330, 385
BfaI CTAG 2 cut(s) 603, 1157
BfuI GTATCC 1 cut(s) 996
BisI GCNGC 2 cut(s) 349, 940
BlsI GCNGC 2 cut(s) 350, 941
Bme1390I CCNGG 1 cut(s) 772
BmrFI CCNGG 1 cut(s) 772
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 2 cut(s) 211, 1117
BmuI ACTGGG 1 cut(s) 1008
BpiI GAAGAC 1 cut(s) 634
BpmI CTGGAG 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 7
BsaAI YACGTR 2 cut(s) 310, 985
BsaBI GATNNNNATC 1 cut(s) 714
BsaHI GRCGYC 1 cut(s) 777
BsaJI CCNNGG 1 cut(s) 771
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 174
Bse1I ACTGG 3 cut(s) 695, 967, 1003
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 1 cut(s) 714
BseBI CCWGG 1 cut(s) 772
BseDI CCNNGG 1 cut(s) 771
BseGI GGATG 6 cut(s) 183, 274, 651, 715, 1108, 1231
BseJI GATNNNNATC 1 cut(s) 714
BseLI CCNNNNNNNGG 2 cut(s) 173, 174
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 396, 914
BseNI ACTGG 3 cut(s) 695, 967, 1003
BseXI GCAGC 1 cut(s) 335
BseYI CCCAGC 1 cut(s) 351
Bsh1285I CGRYCG 1 cut(s) 464
BsiEI CGRYCG 1 cut(s) 464
BslFI GGGAC 2 cut(s) 626, 788
BslI CCNNNNNNNGG 2 cut(s) 173, 174
BsmAI GTCTC 2 cut(s) 330, 385
BsmFI GGGAC 2 cut(s) 626, 788
Bsp119I TTCGAA 1 cut(s) 7
BspACI CCGC 3 cut(s) 464, 478, 939
BspCNI CTCAG 2 cut(s) 395, 913
BspT104I TTCGAA 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 552
BsrI ACTGG 3 cut(s) 695, 967, 1003
BssECI CCNNGG 1 cut(s) 771
BssNI GRCGYC 1 cut(s) 777
BssSI CACGAG 1 cut(s) 884
Bst2BI CACGAG 1 cut(s) 884
Bst2UI CCWGG 1 cut(s) 772
Bst4CI ACNGT 1 cut(s) 592
BstACI GRCGYC 1 cut(s) 777
BstBAI YACGTR 2 cut(s) 310, 985
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 1013
BstDEI CTNAG 3 cut(s) 369, 382, 900
BstF5I GGATG 6 cut(s) 183, 274, 651, 715, 1108, 1231
BstMAI GTCTC 2 cut(s) 330, 385
BstMCI CGRYCG 1 cut(s) 464
BstNI CCWGG 1 cut(s) 772
BstNSI RCATGY 3 cut(s) 368, 545, 635
BstSCI CCNGG 1 cut(s) 770
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 634
BstXI CCANNNNNNTGG 1 cut(s) 771
BsuI GTATCC 1 cut(s) 996
BtsCI GGATG 6 cut(s) 183, 274, 651, 715, 1108, 1231
BtsIMutI CAGTG 2 cut(s) 908, 1249
Cac8I GCNNGC 1 cut(s) 1013
CaiI CAGNNNCTG 1 cut(s) 701
CseI GACGC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 307, 449
CviAII CATG 9 cut(s) 365, 427, 467, 542, 578, 632, 740, 829, 1120
CviJI RGCY 9 cut(s) 252, 348, 505, 701, 768, 942, 1199, 1211, 1224
CviKI_1 RGCY 9 cut(s) 252, 348, 505, 701, 768, 942, 1199, 1211, 1224
CviQI GTAC 2 cut(s) 307, 449
DdeI CTNAG 3 cut(s) 369, 382, 900
DrdI GACNNNNNNGTC 1 cut(s) 655
DseDI GACNNNNNNGTC 1 cut(s) 655
Eco32I GATATC 1 cut(s) 712
Eco57I CTGAAG 2 cut(s) 1116, 1225
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 770
EcoRV GATATC 1 cut(s) 712
EcoT22I ATGCAT 1 cut(s) 813
FaeI CATG 9 cut(s) 368, 430, 470, 545, 581, 635, 743, 832, 1123
FalI AAGNNNNNCTT 2 cut(s) 853, 885
FaqI GGGAC 2 cut(s) 626, 788
FatI CATG 9 cut(s) 364, 426, 466, 541, 577, 631, 739, 828, 1119
FblI GTMKAC 1 cut(s) 995
Fnu4HI GCNGC 2 cut(s) 349, 940
FokI GGATG 6 cut(s) 190, 261, 658, 702, 1095, 1218
Fsp4HI GCNGC 2 cut(s) 349, 940
FspBI CTAG 2 cut(s) 603, 1157
GluI GCNGC 2 cut(s) 349, 940
GsaI CCCAGC 1 cut(s) 355
GsuI CTGGAG 1 cut(s) 678
HgaI GACGC 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 777
Hin1II CATG 9 cut(s) 368, 430, 470, 545, 581, 635, 743, 832, 1123
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 5 cut(s) 186, 241, 378, 686, 704
HpaI GTTAAC 1 cut(s) 124
Hpy166II GTNNAC 5 cut(s) 124, 441, 671, 988, 996
Hpy188I TCNGA 4 cut(s) 385, 661, 709, 1096
Hpy188III TCNNGA 6 cut(s) 62, 134, 218, 886, 971, 1112
Hpy8I GTNNAC 5 cut(s) 124, 441, 671, 988, 996
HpyAV CCTTC 3 cut(s) 24, 178, 968
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4IV ACGT 5 cut(s) 56, 139, 309, 777, 984
HpyCH4V TGCA 5 cut(s) 545, 577, 811, 822, 1069
HpyF3I CTNAG 3 cut(s) 369, 382, 900
HpySE526I ACGT 5 cut(s) 56, 139, 309, 777, 984
Hsp92I GRCGYC 1 cut(s) 777
Hsp92II CATG 9 cut(s) 368, 430, 470, 545, 581, 635, 743, 832, 1123
KspAI GTTAAC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 773
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 2 cut(s) 211, 1117
MaeI CTAG 2 cut(s) 603, 1157
MaeII ACGT 5 cut(s) 56, 139, 309, 777, 984
MaeIII GTNAC 2 cut(s) 676, 980
MboII GAAGA 8 cut(s) 137, 412, 421, 424, 572, 639, 797, 1109
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 6 cut(s) 120, 476, 603, 633, 729, 1214
Mph1103I ATGCAT 1 cut(s) 813
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 7 cut(s) 123, 129, 156, 522, 537, 567, 944
MslI CAYNNNNRTG 2 cut(s) 219, 827
MspR9I CCNGG 1 cut(s) 772
MvaI CCWGG 1 cut(s) 772
NlaIII CATG 9 cut(s) 368, 430, 470, 545, 581, 635, 743, 832, 1123
NsiI ATGCAT 1 cut(s) 813
NspI RCATGY 3 cut(s) 368, 545, 635
NspV TTCGAA 1 cut(s) 7
PciI ACATGT 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 13
PfeI GAWTC 4 cut(s) 186, 241, 686, 704
PkrI GCNGC 2 cut(s) 350, 941
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
Ppu21I YACGTR 2 cut(s) 310, 985
PscI ACATGT 1 cut(s) 631
PshBI ATTAAT 1 cut(s) 129
PsiI TTATAA 1 cut(s) 1273
Psp6I CCWGG 1 cut(s) 770
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 1 cut(s) 770
PstNI CAGNNNCTG 1 cut(s) 701
RsaI GTAC 2 cut(s) 308, 450
RsaNI GTAC 2 cut(s) 307, 449
RseI CAYNNNNRTG 2 cut(s) 219, 827
SaqAI TTAA 7 cut(s) 123, 129, 156, 522, 537, 567, 944
SatI GCNGC 2 cut(s) 349, 940
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 772
SfaNI GCATC 2 cut(s) 211, 1117
SfuI TTCGAA 1 cut(s) 7
SmiMI CAYNNNNRTG 2 cut(s) 219, 827
SsiI CCGC 3 cut(s) 464, 478, 939
SspI AATATT 3 cut(s) 934, 1189, 1257
SspMI CTAG 2 cut(s) 603, 1157
StyD4I CCNGG 1 cut(s) 770
TaaI ACNGT 1 cut(s) 592
TaiI ACGT 5 cut(s) 59, 142, 312, 780, 987
TaqI TCGA 8 cut(s) 7, 27, 33, 61, 148, 219, 376, 1195
TatI WGTACW 1 cut(s) 448
TauI GCSGC 1 cut(s) 942
TfiI GAWTC 4 cut(s) 186, 241, 686, 704
Tru1I TTAA 7 cut(s) 123, 129, 156, 522, 537, 567, 944
Tru9I TTAA 7 cut(s) 123, 129, 156, 522, 537, 567, 944
TscAI CASTG 2 cut(s) 908, 1249
TseI GCWGC 1 cut(s) 348
TspDTI ATGAA 5 cut(s) 6, 375, 573, 798, 963
TspGWI ACGGA 2 cut(s) 839, 1073
TspRI CASTG 2 cut(s) 908, 1249
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 2 cut(s) 203, 1166
XceI RCATGY 3 cut(s) 368, 545, 635
XmiI GTMKAC 1 cut(s) 995
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 2 cut(s) 603, 1157
ZraI GACGTC 1 cut(s) 778
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.