Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Forward (+)

13812304 .. 13813701

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21862.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCCATGGCCGATCCCAGTCTCAATCCAAACGTGCAACTCGAACACTTTTTACGCCATGCCACGTTTCCATATGATCTGGTCCCTGGGAAACACTCGATCCATTTTACTGTTGACCCTCCAACATATCTTGATGTCACTCTAGAATCACAACAATATATAAAGCACAAGGTGTTCCCAAGGAAAGAAGAATTCGCAACCATACTGATATTCACTACCAAAGAGGATGCGCGCGTTCAATGGAATGAGGAGCCTCGACCCGACTATTTTCATGAAGTGTTCAAATTTGGAGTAAACCACAGAAATTACGTAAAATATAACCGCGCGGCCTCTACTAAGGTAACAGTTGAAGAATCCATCGTTGCTTTCTCTCACAACTCTATTAAGCATTTTGCTGAGCAATCGCATGTGTATAACAACAATGTCAACGAAAATACTCATAAACTTGCTGCTGGTAAAACTGCAATCTCTGCCCCTAATATACCAAAGCTGCCTGAGCTTACATCGGGTCAAATTTTGCAAGAGCTACGTCATGACTTTCCCTTCCTTATAGAAGATGTGTATACAACATTTCAGCACGCATTGCCAAGTGGCTACACGCACATGTCTAATTTATCTCTCAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

24.09

Weight (kDa)

6.53

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	563
AccII	CGCG	4 cut(s)	232, 234, 324, 326
AciI	CCGC	2 cut(s)	322, 326
AclWI	GGATC	2 cut(s)	8, 94
AcoI	YGGCCR	2 cut(s)	3, 9
AcsI	RAATTY	3 cut(s)	191, 284, 513
AdeI	CACNNNGTG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	3 cut(s)	239, 283, 350
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	3 cut(s)	490, 499, 526
AluI	AGCT	3 cut(s)	490, 499, 526
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	8, 94
AoxI	GGCC	3 cut(s)	3, 9, 327
ApeKI	GCWGC	2 cut(s)	449, 490
ApoI	RAATTY	3 cut(s)	191, 284, 513
AspLEI	GCGC	3 cut(s)	232, 234, 326
AspS9I	GGNCC	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	436, 477
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	3 cut(s)	327, 450, 491
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	3 cut(s)	328, 451, 492
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	84, 252
BmrFI	CCNGG	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	310
BsaJI	CCNNGG	4 cut(s)	6, 85, 86, 179
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	581
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	4 cut(s)	6, 85, 86, 179
BseGI	GGATG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	2 cut(s)	387, 486
BseNI	ACTGG	1 cut(s)	18
BsePI	GCGCGC	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	436, 477
Bsh1236I	CGCG	4 cut(s)	232, 234, 324, 326
BshFI	GGCC	3 cut(s)	5, 11, 329
BslFI	GGGAC	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	5, 11, 329
Bsp143I	GATC	3 cut(s)	13, 76, 99
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	322, 326
BspANI	GGCC	3 cut(s)	5, 11, 329
BspCNI	CTCAG	2 cut(s)	388, 487
BspFNI	CGCG	4 cut(s)	232, 234, 324, 326
BspHI	TCATGA	2 cut(s)	271, 532
BspLI	GGNNCC	2 cut(s)	84, 252
BspPI	GGATC	2 cut(s)	8, 94
BsrDI	GCAATG	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	4 cut(s)	6, 85, 86, 179
BssHII	GCGCGC	1 cut(s)	230
BssMI	GATC	3 cut(s)	13, 76, 99
BssNAI	GTATAC	1 cut(s)	564
BssT1I	CCWWGG	2 cut(s)	6, 179
Bst1107I	GTATAC	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	112, 346
BstAPI	GCANNNNNTGC	2 cut(s)	470, 583
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	232, 579
BstDEI	CTNAG	3 cut(s)	336, 396, 495
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	4 cut(s)	232, 234, 324, 326
BstHHI	GCGC	3 cut(s)	232, 234, 326
BstKTI	GATC	3 cut(s)	16, 79, 102
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	3 cut(s)	13, 76, 99
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 496, 583
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	2 cut(s)	410, 607
BstSCI	CCNGG	1 cut(s)	85
BstSNI	TACGTA	1 cut(s)	310
BstUI	CGCG	4 cut(s)	232, 234, 324, 326
BstV1I	GCAGC	2 cut(s)	436, 477
BstZ17I	GTATAC	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	5, 11, 329
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	232, 579
CciI	TCATGA	2 cut(s)	271, 532
CfoI	GCGC	3 cut(s)	232, 234, 326
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	6 cut(s)	7, 59, 272, 407, 533, 604
CviJI	RGCY	8 cut(s)	5, 11, 253, 329, 490, 499, 526, 594
CviKI_1	RGCY	8 cut(s)	5, 11, 253, 329, 490, 499, 526, 594
DdeI	CTNAG	3 cut(s)	336, 396, 495
DpnI	GATC	3 cut(s)	15, 78, 101
DpnII	GATC	3 cut(s)	13, 76, 99
DraIII	CACNNNGTG	1 cut(s)	172
EaeI	YGGCCR	2 cut(s)	3, 9
Eco105I	TACGTA	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	6, 179
Eco47I	GGWCC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	6, 179
ErhI	CCWWGG	2 cut(s)	6, 179
FaeI	CATG	6 cut(s)	10, 62, 275, 410, 536, 607
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	6 cut(s)	6, 58, 271, 406, 532, 603
FauNDI	CATATG	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	3 cut(s)	327, 450, 491
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	327, 450, 491
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	3 cut(s)	231, 233, 325
GluI	GCNGC	3 cut(s)	327, 450, 491
HaeIII	GGCC	3 cut(s)	5, 11, 329
HhaI	GCGC	3 cut(s)	232, 234, 326
Hin1II	CATG	6 cut(s)	10, 62, 275, 410, 536, 607
Hin6I	GCGC	3 cut(s)	230, 232, 324
HinP1I	GCGC	3 cut(s)	230, 232, 324
HincII	GTYRAC	2 cut(s)	115, 427
HindII	GTYRAC	2 cut(s)	115, 427
HinfI	GANTC	2 cut(s)	146, 353
Hpy166II	GTNNAC	4 cut(s)	115, 295, 427, 564
Hpy188III	TCNNGA	5 cut(s)	131, 143, 272, 533, 627
Hpy8I	GTNNAC	4 cut(s)	115, 295, 427, 564
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	2 cut(s)	112, 346
HpyCH4IV	ACGT	4 cut(s)	33, 65, 309, 529
HpyCH4V	TGCA	3 cut(s)	37, 464, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 496, 583
HpyF3I	CTNAG	3 cut(s)	336, 396, 495
HpySE526I	ACGT	4 cut(s)	33, 65, 309, 529
Hsp92II	CATG	6 cut(s)	10, 62, 275, 410, 536, 607
HspAI	GCGC	3 cut(s)	230, 232, 324
Kzo9I	GATC	3 cut(s)	13, 76, 99
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	6 cut(s)	31, 65, 72, 99, 438, 507
Lsp1109I	GCAGC	2 cut(s)	436, 477
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	4 cut(s)	33, 65, 309, 529
MaeIII	GTNAC	2 cut(s)	136, 340
MalI	GATC	3 cut(s)	15, 78, 101
MboI	GATC	3 cut(s)	13, 76, 99
MboII	GAAGA	3 cut(s)	200, 362, 566
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	191, 284, 304, 513, 610
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	129, 217, 241, 264, 340
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	602
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	4 cut(s)	232, 234, 324, 326
MwoI	GCNNNNNNNGC	3 cut(s)	470, 496, 583
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	3 cut(s)	13, 76, 99
NlaIII	CATG	6 cut(s)	10, 62, 275, 410, 536, 607
NlaIV	GGNNCC	2 cut(s)	84, 252
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	2 cut(s)	410, 607
PagI	TCATGA	2 cut(s)	271, 532
PasI	CCCWGGG	1 cut(s)	86
PauI	GCGCGC	1 cut(s)	230
PciI	ACATGT	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	146, 353
PkrI	GCNGC	3 cut(s)	328, 451, 492
Ppu21I	YACGTR	1 cut(s)	310
PscI	ACATGT	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	84, 252
PspPI	GGNCC	1 cut(s)	82
PsrI	GAACNNNNNNTAC	2 cut(s)	36, 68
PteI	GCGCGC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	327, 450, 491
Sau3AI	GATC	3 cut(s)	13, 76, 99
Sau96I	GGNCC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	9 cut(s)	36, 68, 174, 312, 342, 492, 501, 528, 532
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	602
SnaBI	TACGTA	1 cut(s)	310
Sse9I	AATT	5 cut(s)	191, 284, 304, 513, 610
SsiI	CCGC	2 cut(s)	322, 326
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	6, 179
TaaI	ACNGT	2 cut(s)	112, 346
TaiI	ACGT	4 cut(s)	36, 68, 312, 532
TaqI	TCGA	3 cut(s)	42, 98, 256
TasI	AATT	5 cut(s)	191, 284, 304, 513, 610
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	146, 353
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	449, 490
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	260, 288
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	3 cut(s)	191, 284, 513
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	2 cut(s)	410, 607
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.