Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000014.1

Orthogroup ID

OG0008103

Physical Location & Seq

Genomic Coordinates Reverse (-)

45949 .. 47878

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000014.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atggcaaagcaaattcgtaacccttctgctgaactcgaagacctgttaagagatcacacctcatatcaaaatccggaatttttggctctatcagggcaacataagtaccattttacttccaatcctttgtatcctgatggcagtgttgaaaaccttcggtacattaaatacgaaccaatcacagggatagagtgctttgccacgggacagatatttgacaattgtggtgatgctattgaacattggaagattcaaaaaagatatgacgcaagatttgtcatgcacccacaggaatgtgtaacggtgaaacatgattcgaaagttctttacatgttgattttccccaaggttatcagagacattagcgtatggattgaagaacatgccaaaggacaagtttcagatgtggatatgtgggaggtcctgaagaagactgagaaagcaatgagatatttatcggtggaatcacactcacgtcgatcacatggaaatctcttgagaggcattggtatagcagcggatcttaatgtatacttcttcaacttcggcgctgataaaaaaggatacaatactgatatccaagtgcttgatgatattctcacatccattgagcctaagttggtggatcctacaattcaacattgtgtcactcggtggaagtcctttctctctatggcttgttcactgtctccttgtgctattacgccacctctttttcgtccctttgactctaaccatgtcagagttattcttcattatccggcatcttgggacgatgaagagaaacttcggttcttggcaaacattcataaattatgcacggacaagtgcaaccggcataattccaatttgatgaatgatatcacatttgatgctgagatggtgaaaaaatattctaactgggggaatctcataagtgccacaactaatgccttatctcaagtctaccaatttggttgccgccaaggaaattatttgagaactgatctagcgggaaacagggtcttatgggaggcatcagttgttgtgtttgctcacaatagtgttaagcactattctgagagggcgcaatggcataacaacaggctattaaacaatccttcttttacatatatgccggagcttatatcaagtcaagcatcacatgttcaatctttctcagatattgagcgaaagattataagctgcagacatcttggtcgattaatggcttattcacagccgcctcagcaatctgatgggtactttcttatttcgaatctactgaagcctttccacattgactttcctaacacctttctagtagctgtctactgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

439

Amino Acids

50.7

Weight (kDa)

7.3

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02240 FvH4_1g02270 FvH4_1g02270 FvH4_1g02270 FvH4_1g02411 FvH4_1g02452 FvH4_1g02842 FvH4_1g21862 FvH4_4g35711 FvH4_4g35724 FvH4_4g35742 FvH4_4g35770 FvH4_7g04550
rosa_chinensis	RchiOBHm_Chr6g0258741
rosa_multiflora	Rmu_co8267141.1_g000001 Rmu_ssc0000014.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153640
rosa_rugosa	Rorug01G0474500
rosa_samantha	Rh2BG027700 Rh2BG027800 Rh6AG035600 Rh6CG032100 Rh6DG030000 Rh7CG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1181
AasI	GACNNNNNNGTC	1 cut(s)	1197
AccI	GTMKAC	3 cut(s)	531, 945, 1311
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	4 cut(s)	518, 961, 992, 1223
AclWI	GGATC	3 cut(s)	528, 620, 633
AcsI	RAATTY	2 cut(s)	12, 77
AcuI	CTGAAG	2 cut(s)	446, 1286
AdeI	CACNNNGTG	1 cut(s)	654
AfaI	GTAC	3 cut(s)	107, 161, 1244
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	2 cut(s)	330, 1144
AgsI	TTSAA	7 cut(s)	149, 239, 254, 377, 541, 638, 1151
AjiI	CACGTC	1 cut(s)	476
AleI	CACNNNNGTG	1 cut(s)	1041
AluBI	AGCT	3 cut(s)	1123, 1185, 1307
AluI	AGCT	3 cut(s)	1123, 1185, 1307
Alw26I	GTCTC	2 cut(s)	351, 693
AlwI	GGATC	3 cut(s)	528, 620, 633
Aor13HI	TCCGGA	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	515, 1185
ApoI	RAATTY	2 cut(s)	12, 77
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AseI	ATTAAT	1 cut(s)	1205
Asp700I	GAANNNNTTC	2 cut(s)	153, 1271
AspLEI	GCGC	2 cut(s)	551, 1069
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	3 cut(s)	239, 316, 895
AsuII	TTCGAA	2 cut(s)	317, 1256
AvaII	GGWCC	1 cut(s)	421
BaeI	ACNNNNGTAYC	2 cut(s)	89, 122
BamHI	GGATCC	1 cut(s)	625
BbsI	GAAGAC	2 cut(s)	45, 437
BbvCI	CCTCAGC	1 cut(s)	1227
BbvI	GCAGC	2 cut(s)	527, 1172
BccI	CCATC	3 cut(s)	131, 874, 1232
BciVI	GTATCC	2 cut(s)	141, 557
BcoDI	GTCTC	2 cut(s)	351, 693
BfaI	CTAG	3 cut(s)	989, 1301, 1318
BfmI	CTRYAG	1 cut(s)	1186
BfoI	RGCGCY	1 cut(s)	552
BfuI	GTATCC	2 cut(s)	141, 557
BisI	GCNGC	4 cut(s)	516, 961, 1186, 1223
BlsI	GCNGC	4 cut(s)	517, 962, 1187, 1224
Bme18I	GGWCC	1 cut(s)	421
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	627
BmrI	ACTGGG	1 cut(s)	910
BmsI	GCATC	5 cut(s)	220, 773, 862, 1025, 1148
BmuI	ACTGGG	1 cut(s)	910
BpiI	GAAGAC	2 cut(s)	45, 437
Bpu10I	CCTNAGC	1 cut(s)	1227
Bpu14I	TTCGAA	2 cut(s)	317, 1256
BpuEI	CTTGAG	2 cut(s)	517, 924
BsaBI	GATNNNNATC	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	201, 345, 964
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	834
Bse1I	ACTGG	1 cut(s)	905
Bse3DI	GCAATG	2 cut(s)	450, 1076
Bse8I	GATNNNNATC	1 cut(s)	454
BseAI	TCCGGA	1 cut(s)	73
BseDI	CCNNGG	3 cut(s)	201, 345, 964
BseGI	GGATG	1 cut(s)	602
BseJI	GATNNNNATC	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	2 cut(s)	450, 1076
BseMII	CTCAG	5 cut(s)	426, 867, 1050, 1173, 1241
BseNI	ACTGG	1 cut(s)	905
BseXI	GCAGC	2 cut(s)	527, 1172
BsiSI	CCGG	4 cut(s)	74, 761, 835, 1118
BslFI	GGGAC	3 cut(s)	219, 705, 785
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	2 cut(s)	351, 693
BsmFI	GGGAC	3 cut(s)	219, 705, 785
Bsp119I	TTCGAA	2 cut(s)	317, 1256
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	5 cut(s)	52, 479, 520, 625, 985
BspACI	CCGC	4 cut(s)	518, 961, 992, 1223
BspCNI	CTCAG	5 cut(s)	427, 868, 1051, 1172, 1240
BspEI	TCCGGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	627
BspMAI	CTGCAG	1 cut(s)	1190
BspPI	GGATC	3 cut(s)	528, 620, 633
BspT104I	TTCGAA	2 cut(s)	317, 1256
BsrDI	GCAATG	2 cut(s)	450, 1076
BsrFI	RCCGGY	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	905
BssAI	RCCGGY	1 cut(s)	834
BssECI	CCNNGG	3 cut(s)	201, 345, 964
BssMI	GATC	5 cut(s)	52, 479, 520, 625, 985
BssNAI	GTATAC	1 cut(s)	532
BssT1I	CCWWGG	2 cut(s)	345, 964
Bst1107I	GTATAC	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	304, 687
Bst6I	CTCTTC	1 cut(s)	774
BstBI	TTCGAA	2 cut(s)	317, 1256
BstDEI	CTNAG	6 cut(s)	435, 615, 876, 1059, 1159, 1227
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	602
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	2 cut(s)	551, 1069
BstKTI	GATC	5 cut(s)	55, 482, 523, 628, 988
BstMAI	GTCTC	2 cut(s)	351, 693
BstMBI	GATC	5 cut(s)	52, 479, 520, 625, 985
BstMWI	GCNNNNNNNGC	1 cut(s)	1228
BstNSI	RCATGY	3 cut(s)	334, 386, 1148
BstSFI	CTRYAG	1 cut(s)	1186
BstV1I	GCAGC	2 cut(s)	527, 1172
BstV2I	GAAGAC	2 cut(s)	45, 437
BstX2I	RGATCY	2 cut(s)	520, 625
BstYI	RGATCY	2 cut(s)	520, 625
BstZ17I	GTATAC	1 cut(s)	532
BsuI	GTATCC	2 cut(s)	141, 557
BtgI	CCRYGG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	148, 683
CfoI	GCGC	2 cut(s)	551, 1069
Cfr10I	RCCGGY	1 cut(s)	834
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	3 cut(s)	106, 160, 1243
CviAII	CATG	7 cut(s)	280, 311, 331, 383, 485, 737, 1145
CviQI	GTAC	3 cut(s)	106, 160, 1243
DdeI	CTNAG	6 cut(s)	435, 615, 876, 1059, 1159, 1227
DpnI	GATC	5 cut(s)	54, 481, 522, 627, 987
DpnII	GATC	5 cut(s)	52, 479, 520, 625, 985
DraIII	CACNNNGTG	1 cut(s)	654
DrdI	GACNNNNNNGTC	1 cut(s)	1197
DseDI	GACNNNNNNGTC	1 cut(s)	1197
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco130I	CCWWGG	2 cut(s)	345, 964
Eco32I	GATATC	2 cut(s)	577, 862
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	2 cut(s)	446, 1286
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRV	GATATC	2 cut(s)	577, 862
EcoT14I	CCWWGG	2 cut(s)	345, 964
ErhI	CCWWGG	2 cut(s)	345, 964
FaeI	CATG	7 cut(s)	283, 314, 334, 386, 488, 740, 1148
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	3 cut(s)	219, 705, 785
FatI	CATG	7 cut(s)	279, 310, 330, 382, 484, 736, 1144
FauI	CCCGC	1 cut(s)	985
FblI	GTMKAC	3 cut(s)	531, 945, 1311
Fnu4HI	GCNGC	4 cut(s)	516, 961, 1186, 1223
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	4 cut(s)	516, 961, 1186, 1223
FspBI	CTAG	3 cut(s)	989, 1301, 1318
GlaI	GCGC	2 cut(s)	550, 1068
GluI	GCNGC	4 cut(s)	516, 961, 1186, 1223
HaeII	RGCGCY	1 cut(s)	552
HapII	CCGG	4 cut(s)	74, 761, 835, 1118
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	551, 1069
Hin1II	CATG	7 cut(s)	283, 314, 334, 386, 488, 740, 1148
Hin6I	GCGC	2 cut(s)	549, 1067
HinP1I	GCGC	2 cut(s)	549, 1067
HinfI	GANTC	6 cut(s)	250, 314, 464, 728, 907, 1258
HpaII	CCGG	4 cut(s)	74, 761, 835, 1118
HphI	GGTGA	3 cut(s)	239, 316, 895
Hpy166II	GTNNAC	4 cut(s)	532, 683, 946, 1312
Hpy188I	TCNGA	6 cut(s)	356, 403, 743, 1060, 1162, 1237
Hpy188III	TCNNGA	4 cut(s)	74, 134, 424, 496
Hpy8I	GTNNAC	4 cut(s)	532, 683, 946, 1312
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	3 cut(s)	33, 164, 1110
HpyCH4III	ACNGT	2 cut(s)	304, 687
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	4 cut(s)	283, 819, 831, 1188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1228
HpyF3I	CTNAG	6 cut(s)	435, 615, 876, 1059, 1159, 1227
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	7 cut(s)	283, 314, 334, 386, 488, 740, 1148
HspAI	GCGC	2 cut(s)	549, 1067
Kpn2I	TCCGGA	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	52, 479, 520, 625, 985
LmnI	GCTCC	1 cut(s)	1120
Lsp1109I	GCAGC	2 cut(s)	527, 1172
LweI	GCATC	5 cut(s)	220, 773, 862, 1025, 1148
MaeI	CTAG	3 cut(s)	989, 1301, 1318
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	3 cut(s)	17, 298, 646
MalI	GATC	5 cut(s)	54, 481, 522, 627, 987
MboI	GATC	5 cut(s)	52, 479, 520, 625, 985
MboII	GAAGA	8 cut(s)	50, 259, 389, 439, 442, 529, 743, 791
MfeI	CAATTG	1 cut(s)	220
MflI	RGATCY	2 cut(s)	520, 625
MluCI	AATT	9 cut(s)	12, 77, 220, 633, 812, 841, 847, 950, 970
MlyI	GAGTC	1 cut(s)	722
MnlI	CCTC	7 cut(s)	70, 412, 494, 720, 1006, 1056, 1236
MroI	TCCGGA	1 cut(s)	73
MroXI	GAANNNNTTC	2 cut(s)	153, 1271
MseI	TTAA	6 cut(s)	47, 165, 525, 1047, 1091, 1205
MslI	CAYNNNNRTG	2 cut(s)	292, 1041
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	4 cut(s)	74, 761, 835, 1118
MunI	CAATTG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	1228
NdeII	GATC	5 cut(s)	52, 479, 520, 625, 985
NlaIII	CATG	7 cut(s)	283, 314, 334, 386, 488, 740, 1148
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	646
NspI	RCATGY	3 cut(s)	334, 386, 1148
NspV	TTCGAA	2 cut(s)	317, 1256
OliI	CACNNNNGTG	1 cut(s)	1041
PciI	ACATGT	2 cut(s)	330, 1144
PdmI	GAANNNNTTC	2 cut(s)	153, 1271
PfeI	GAWTC	5 cut(s)	250, 314, 464, 907, 1258
PkrI	GCNGC	4 cut(s)	517, 962, 1187, 1224
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	2 cut(s)	330, 1144
PshBI	ATTAAT	1 cut(s)	1205
PsiI	TTATAA	1 cut(s)	1181
Psp5II	RGGWCCY	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	421
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	1190
PsuI	RGATCY	2 cut(s)	520, 625
RsaI	GTAC	3 cut(s)	107, 161, 1244
RsaNI	GTAC	3 cut(s)	106, 160, 1243
RseI	CAYNNNNRTG	2 cut(s)	292, 1041
SaqAI	TTAA	6 cut(s)	47, 165, 525, 1047, 1091, 1205
SatI	GCNGC	4 cut(s)	516, 961, 1186, 1223
Sau3AI	GATC	5 cut(s)	52, 479, 520, 625, 985
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	1 cut(s)	722
SfaNI	GCATC	5 cut(s)	220, 773, 862, 1025, 1148
SfcI	CTRYAG	1 cut(s)	1186
SfuI	TTCGAA	2 cut(s)	317, 1256
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	292, 1041
SmlI	CTYRAG	2 cut(s)	496, 939
SmoI	CTYRAG	2 cut(s)	496, 939
Sse9I	AATT	9 cut(s)	12, 77, 220, 633, 812, 841, 847, 950, 970
SsiI	CCGC	4 cut(s)	518, 961, 992, 1223
SspI	AATATT	1 cut(s)	893
SspMI	CTAG	3 cut(s)	989, 1301, 1318
StyI	CCWWGG	2 cut(s)	345, 964
TaaI	ACNGT	2 cut(s)	304, 687
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	5 cut(s)	36, 317, 478, 1201, 1256
TasI	AATT	9 cut(s)	12, 77, 220, 633, 812, 841, 847, 950, 970
TauI	GCSGC	2 cut(s)	963, 1225
TfiI	GAWTC	5 cut(s)	250, 314, 464, 907, 1258
Tru1I	TTAA	6 cut(s)	47, 165, 525, 1047, 1091, 1205
Tru9I	TTAA	6 cut(s)	47, 165, 525, 1047, 1091, 1205
TscAI	CASTG	2 cut(s)	148, 690
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	2 cut(s)	515, 1185
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	4 cut(s)	743, 792, 797, 869
TspGWI	ACGGA	1 cut(s)	836
TspRI	CASTG	2 cut(s)	148, 690
VpaK11BI	GGWCC	1 cut(s)	421
VspI	ATTAAT	1 cut(s)	1205
XapI	RAATTY	2 cut(s)	12, 77
XceI	RCATGY	3 cut(s)	334, 386, 1148
XmiI	GTMKAC	3 cut(s)	531, 945, 1311
XmnI	GAANNNNTTC	2 cut(s)	153, 1271
XspI	CTAG	3 cut(s)	989, 1301, 1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.