Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003933

Physical Location & Seq

Genomic Coordinates Forward (+)

2337332 .. 2338201

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCAGAGGCACCACAGATCGAAATCTTCAAAGAGGAATTATTCTACTCTAAAATGAGCGAAGAGAGAGCACAGCCAATCTTTGAAGAGGAACAACTACCTGCTGCTGTGATTCATATTGCTGACAAGGATTCACAGGCTGCTGGAGACGACTCTACTCAAATCATGCAAGAAAAACCAGAGGCTGCTGGAGAATGTCCGACTGAAAATGACAAAAAGCCGCTTTCTGAATGCATCTTATGCGGTAAGATTACTGATGATCATGACTTTTTCAATTGCCCCGACAGAGAAAGAATCAGGAAGCTGACTTCTTACTGCATGGTATGCAATAAGAAAACTGATCATGACACTCCCGATTGCCCCAGAGCAACTGAAGATGTCCTCAAGAACCTTGCTTATTGCTCGATATGCGACAAGAATACTGACCATGACACCTTCGATTGCCCGAACGAAAATGGATTTGTATGGATCGATGGAGTTAAAATACCCAATGTTTGTGATCTCTGTAGAGTGGTTGGTCATAGGGGTATAGATTGCCCTATAGACTCTGACCATGATCTTGAGTATGGTCTTGACTCGTCTATGGATGACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.43

Weight (kDa)

4.38

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04180 FvH4_1g04360 FvH4_1g04421 FvH4_1g04461 FvH4_1g04542 FvH4_1g04780 FvH4_1g23532
malus_domestica	MD13G1159200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0090381
rosa_laevigata	RLG00000001042 RLG00000016106
rosa_multiflora	Rmu_sc0002131.1_g000021
rosa_rugosa	Rorug02G0006800 Rorug02G0007600 Rorug02G0007700 Rorug02G0007700 Rorug02G0007700 Rorug02G0007800 Rorug02G0007900
rosa_samantha	Rh2BG051800 Rh2BG051900 Rh2BG052500 Rh2CG053900 Rh2CG054000 Rh2CG054600 Rh2DG053000 Rh2DG053400 Rh7AG457100 Rh7AG457300 Rh7BG427900 Rh7CG475500 Rh7DG444500
rosa_wichuraiana	Rw2G004370 Rw7G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	10
AciI	CCGC	2 cut(s)	221, 243
AclWI	GGATC	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	393
AgsI	TTSAA	3 cut(s)	31, 86, 274
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	104, 140, 185
BanI	GGYRCC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	91, 127, 172
BccI	CCATC	1 cut(s)	467
BclI	TGATCA	2 cut(s)	259, 340
BcoDI	GTCTC	1 cut(s)	141
BfmI	CTRYAG	2 cut(s)	505, 540
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	4 cut(s)	105, 141, 186, 221
BlsI	GCNGC	4 cut(s)	106, 142, 187, 222
BmiI	GGNNCC	1 cut(s)	12
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	165, 210
BpuEI	CTTGAG	2 cut(s)	368, 581
Bsa29I	ATCGAT	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	596
Bse8I	GATNNNNATC	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	471
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	596
BseXI	GCAGC	3 cut(s)	91, 127, 172
BshNI	GGYRCC	1 cut(s)	10
BshVI	ATCGAT	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	6 cut(s)	18, 259, 340, 468, 499, 556
BspACI	CCGC	2 cut(s)	221, 243
BspDI	ATCGAT	1 cut(s)	471
BspHI	TCATGA	2 cut(s)	262, 343
BspLI	GGNNCC	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	596
BssMI	GATC	6 cut(s)	18, 259, 340, 468, 499, 556
Bst6I	CTCTTC	2 cut(s)	57, 81
BstAPI	GCANNNNNTGC	2 cut(s)	240, 324
BstF5I	GGATG	1 cut(s)	592
BstKTI	GATC	6 cut(s)	21, 262, 343, 471, 502, 559
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	6 cut(s)	18, 259, 340, 468, 499, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 324, 408
BstSFI	CTRYAG	2 cut(s)	505, 540
BstV1I	GCAGC	3 cut(s)	91, 127, 172
Bsu15I	ATCGAT	1 cut(s)	471
BsuTUI	ATCGAT	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	592
BveI	ACCTGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	185
CciI	TCATGA	2 cut(s)	262, 343
ClaI	ATCGAT	1 cut(s)	471
CviAII	CATG	6 cut(s)	166, 263, 319, 344, 428, 554
CviJI	RGCY	5 cut(s)	76, 140, 185, 220, 304
CviKI_1	RGCY	5 cut(s)	76, 140, 185, 220, 304
DpnI	GATC	6 cut(s)	20, 261, 342, 470, 501, 558
DpnII	GATC	6 cut(s)	18, 259, 340, 468, 499, 556
Eam1104I	CTCTTC	2 cut(s)	57, 81
EarI	CTCTTC	2 cut(s)	57, 81
Eco57I	CTGAAG	1 cut(s)	393
EcoT22I	ATGCAT	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	6 cut(s)	169, 266, 322, 347, 431, 557
FatI	CATG	6 cut(s)	165, 262, 318, 343, 427, 553
FbaI	TGATCA	2 cut(s)	259, 340
Fnu4HI	GCNGC	4 cut(s)	105, 141, 186, 221
Fsp4HI	GCNGC	4 cut(s)	105, 141, 186, 221
GluI	GCNGC	4 cut(s)	105, 141, 186, 221
GsuI	CTGGAG	2 cut(s)	165, 210
Hin1II	CATG	6 cut(s)	169, 266, 322, 347, 431, 557
HinfI	GANTC	6 cut(s)	112, 131, 152, 294, 545, 575
Hpy188I	TCNGA	4 cut(s)	7, 201, 229, 550
Hpy188III	TCNNGA	7 cut(s)	263, 298, 344, 353, 385, 560, 572
HpyAV	CCTTC	1 cut(s)	445
HpyCH4V	TGCA	4 cut(s)	169, 234, 318, 327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 324, 408
Hsp92II	CATG	6 cut(s)	169, 266, 322, 347, 431, 557
Ksp22I	TGATCA	2 cut(s)	259, 340
Kzo9I	GATC	6 cut(s)	18, 259, 340, 468, 499, 556
LpnPI	CCDG	8 cut(s)	114, 122, 129, 174, 192, 283, 376, 577
Lsp1109I	GCAGC	3 cut(s)	91, 127, 172
LweI	GCATC	1 cut(s)	243
MalI	GATC	6 cut(s)	20, 261, 342, 470, 501, 558
MboI	GATC	6 cut(s)	18, 259, 340, 468, 499, 556
MboII	GAAGA	4 cut(s)	19, 74, 98, 386
MfeI	CAATTG	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	2 cut(s)	38, 274
MlyI	GAGTC	3 cut(s)	146, 539, 569
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	28, 82, 175, 392
Mph1103I	ATGCAT	1 cut(s)	236
MseI	TTAA	1 cut(s)	480
MunI	CAATTG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	240, 324, 408
NdeII	GATC	6 cut(s)	18, 259, 340, 468, 499, 556
NlaIII	CATG	6 cut(s)	169, 266, 322, 347, 431, 557
NlaIV	GGNNCC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	236
PagI	TCATGA	2 cut(s)	262, 343
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	3 cut(s)	112, 131, 294
PkrI	GCNGC	4 cut(s)	106, 142, 187, 222
PleI	GAGTC	3 cut(s)	146, 539, 569
PpsI	GAGTC	3 cut(s)	146, 539, 569
PspN4I	GGNNCC	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	4 cut(s)	105, 141, 186, 221
Sau3AI	GATC	6 cut(s)	18, 259, 340, 468, 499, 556
SchI	GAGTC	3 cut(s)	146, 539, 569
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	4 cut(s)	103, 306, 393, 437
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	2 cut(s)	505, 540
SmlI	CTYRAG	2 cut(s)	383, 560
SmoI	CTYRAG	2 cut(s)	383, 560
Sse9I	AATT	2 cut(s)	38, 274
SsiI	CCGC	2 cut(s)	221, 243
TaqI	TCGA	4 cut(s)	21, 404, 438, 471
TasI	AATT	2 cut(s)	38, 274
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	3 cut(s)	112, 131, 294
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseI	GCWGC	3 cut(s)	104, 140, 185
TspDTI	ATGAA	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.