Rh2DG053000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003933
Physical Location & Seq
Reverse (-)
3798832 .. 3800448
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG053000.1

Sequence Viewer

Length: 462 bp
ATGAGCGTGATGCCTTCCCGTGCCCGACGAGGATCCGATCAGGTGCCCCAACTAGCAAAGCGGCTTAGGAAGGGAGATGAGAACCGGGCCGGATCCTCGACCAAGCAGCTTGATCCTGCAGGTAGCAGCAAAGAAAAACCAAAGACTGCTGGAGACAATTTCACTCAAGTCCTCCAGCGTGTTGAAAACTCTTTGATTCATAATGCCGACGAAAAATCACAGGTTTCAGGAGATTCTTCCACTAGAACCGTCAACAAAGTACCTTCGTATTGTAAGCTGTGTCGTAAGTATACTGATCACAGAACTGTACAGTGCCCCGACAGATCATATGTATGGCACAACGGATTTTATCGACTCAATTATTGTGATCTTTGTAGTGACTTTGGTCACGTAGGTGAGTTGTGCCCTCTCAACGAGTTTGATATGGACTATGATGCTCCAGGAAGCGACTGGCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.3

Weight (kDa)

7.63

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 290
AciI CCGC 1 cut(s) 61
AclWI GGATC 5 cut(s) 27, 40, 87, 100, 107
AfaI GTAC 2 cut(s) 261, 309
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 439
AleI CACNNNNGTG 1 cut(s) 393
AluBI AGCT 2 cut(s) 109, 277
AluI AGCT 2 cut(s) 109, 277
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 5 cut(s) 27, 40, 87, 100, 107
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 106, 126
AspS9I GGNCC 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 407
BaeGI GKGCMC 4 cut(s) 25, 48, 317, 407
BamHI GGATCC 2 cut(s) 32, 92
BanI GGYRCC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 118, 138
BciT130I CCWGG 1 cut(s) 441
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 2 cut(s) 53, 243
BfmI CTRYAG 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 3 cut(s) 62, 107, 127
BlsI GCNGC 3 cut(s) 63, 108, 128
Bme1390I CCNGG 2 cut(s) 86, 441
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 3 cut(s) 34, 45, 94
BmrFI CCNGG 2 cut(s) 86, 441
BmsI GCATC 1 cut(s) 424
BoxI GACNNNNGTC 1 cut(s) 384
BpmI CTGGAG 3 cut(s) 158, 171, 423
Bpu10I CCTNAGC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 455
BseSI GKGCMC 4 cut(s) 25, 48, 317, 407
BseXI GCAGC 2 cut(s) 118, 138
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 85, 90
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 4 cut(s) 25, 48, 317, 407
Bsp1407I TGTACA 1 cut(s) 307
Bsp143I GATC 7 cut(s) 32, 37, 92, 112, 295, 323, 367
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 34, 45, 94
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 5 cut(s) 27, 40, 87, 100, 107
BspT107I GGYRCC 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 307
BsrI ACTGG 1 cut(s) 455
BssMI GATC 7 cut(s) 32, 37, 92, 112, 295, 323, 367
BssNAI GTATAC 1 cut(s) 291
Bst1107I GTATAC 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 250, 307, 312
BstAUI TGTACA 1 cut(s) 307
BstBAI YACGTR 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 65
BstKTI GATC 7 cut(s) 35, 40, 95, 115, 298, 326, 370
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 7 cut(s) 32, 37, 92, 112, 295, 323, 367
BstNI CCWGG 1 cut(s) 441
BstPAI GACNNNNGTC 1 cut(s) 384
BstSCI CCNGG 2 cut(s) 84, 439
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 4 cut(s) 25, 48, 317, 407
BstV1I GCAGC 2 cut(s) 118, 138
BstX2I RGATCY 2 cut(s) 32, 92
BstYI RGATCY 2 cut(s) 32, 92
BstZ17I GTATAC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 317
BveI ACCTGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 260, 308
CviAII CATG 1 cut(s) 455
CviJI RGCY 4 cut(s) 64, 89, 109, 277
CviKI_1 RGCY 4 cut(s) 64, 89, 109, 277
CviQI GTAC 2 cut(s) 260, 308
DdeI CTNAG 1 cut(s) 65
DpnI GATC 7 cut(s) 34, 39, 94, 114, 297, 325, 369
DpnII GATC 7 cut(s) 32, 37, 92, 112, 295, 323, 367
EcoRII CCWGG 1 cut(s) 439
FaeI CATG 1 cut(s) 458
FaiI YATR 8 cut(s) 201, 291, 328, 330, 334, 425, 432, 456
FatI CATG 1 cut(s) 454
FauNDI CATATG 1 cut(s) 328
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 3 cut(s) 62, 107, 127
Fsp4HI GCNGC 3 cut(s) 62, 107, 127
FspBI CTAG 2 cut(s) 53, 243
GluI GCNGC 3 cut(s) 62, 107, 127
GsuI CTGGAG 3 cut(s) 158, 171, 423
HaeIII GGCC 1 cut(s) 89
HapII CCGG 2 cut(s) 85, 90
Hin1II CATG 1 cut(s) 458
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 196, 233, 354
HpaII CCGG 2 cut(s) 85, 90
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 253, 291
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 2 cut(s) 253, 291
Hpy99I CGWCG 2 cut(s) 30, 212
HpyAV CCTTC 3 cut(s) 24, 64, 273
HpyCH4III ACNGT 3 cut(s) 250, 307, 312
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 1 cut(s) 458
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 7 cut(s) 32, 37, 92, 112, 295, 323, 367
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 2 cut(s) 118, 138
LweI GCATC 1 cut(s) 424
MaeI CTAG 2 cut(s) 53, 243
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 377, 386
MalI GATC 7 cut(s) 34, 39, 94, 114, 297, 325, 369
MboI GATC 7 cut(s) 32, 37, 92, 112, 295, 323, 367
MboII GAAGA 1 cut(s) 228
MflI RGATCY 2 cut(s) 32, 92
MhlI GDGCHC 4 cut(s) 25, 48, 317, 407
MluCI AATT 2 cut(s) 157, 358
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 4 cut(s) 23, 106, 182, 417
MseI TTAA 1 cut(s) 460
MslI CAYNNNNRTG 2 cut(s) 331, 393
MspI CCGG 2 cut(s) 85, 90
MspR9I CCNGG 2 cut(s) 86, 441
MvaI CCWGG 1 cut(s) 441
NciI CCSGG 1 cut(s) 86
NdeI CATATG 1 cut(s) 328
NdeII GATC 7 cut(s) 32, 37, 92, 112, 295, 323, 367
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 3 cut(s) 34, 45, 94
NmuCI GTSAC 2 cut(s) 377, 386
OliI CACNNNNGTG 1 cut(s) 393
PfeI GAWTC 2 cut(s) 196, 233
PfoI TCCNGGA 1 cut(s) 439
PkrI GCNGC 3 cut(s) 63, 108, 128
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 391
PshAI GACNNNNGTC 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 3 cut(s) 34, 45, 94
PspPI GGNCC 1 cut(s) 87
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 2 cut(s) 32, 92
RsaI GTAC 2 cut(s) 261, 309
RsaNI GTAC 2 cut(s) 260, 308
RseI CAYNNNNRTG 2 cut(s) 331, 393
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 3 cut(s) 62, 107, 127
Sau3AI GATC 7 cut(s) 32, 37, 92, 112, 295, 323, 367
Sau96I GGNCC 1 cut(s) 87
SbfI CCTGCAGG 1 cut(s) 121
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 86, 441
SdaI CCTGCAGG 1 cut(s) 121
SduI GDGCHC 4 cut(s) 25, 48, 317, 407
SetI ASST 8 cut(s) 45, 111, 124, 225, 265, 279, 393, 397
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 117
SmiMI CAYNNNNRTG 2 cut(s) 331, 393
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse8387I CCTGCAGG 1 cut(s) 121
Sse9I AATT 2 cut(s) 157, 358
SsiI CCGC 1 cut(s) 61
SspMI CTAG 2 cut(s) 53, 243
StyD4I CCNGG 2 cut(s) 84, 439
TaaI ACNGT 3 cut(s) 250, 307, 312
TaiI ACGT 1 cut(s) 393
TaqI TCGA 2 cut(s) 98, 352
TasI AATT 2 cut(s) 157, 358
TatI WGTACW 1 cut(s) 307
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 2 cut(s) 196, 233
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TscAI CASTG 1 cut(s) 317
TseFI GTSAC 2 cut(s) 377, 386
TseI GCWGC 2 cut(s) 106, 126
Tsp45I GTSAC 2 cut(s) 377, 386
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 2 cut(s) 53, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.