Rh7AG457100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003933
Physical Location & Seq
Reverse (-)
62741762 .. 62742202
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG457100.1

Sequence Viewer

Length: 441 bp
ATGGAGTACGCGGAGGATATCTTGGTAGAGTGTCTTCATCCTGAGGATAACATACTGCCAGAAAAGCTAGAAGACTACTCTGAAATCATCAAAGAGGAACCGCACCCTGCTGCACACTCTTTGATTCATATTGCTGAAAAAAATTCACAGGTTGCTGGAGACTATTCGACTCAAATCATCCAAGAAAAACCACAGATTGTTGGAGACTTTTTGACTGAAAATGCCGAAAAGATGCTTTGTTATTGCATGGTATGCGATAAGAATACTGATCATGACACTTTCGATTGCCCCGACAAAGAAACGGGATTTGTGTGGTACAAAGGAGCTTATATGCCCAATGTTTGTGATCTCTGTAACAAGGTAGGTCACGTGGGTGAATTATGCCCTGTTGACACTGACTCTGATCTTGATTATGATCCTCCGGGACCGGAGATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

4.2

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 11, 101
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 1 cut(s) 142
AcvI CACGTG 1 cut(s) 370
AfaI GTAC 2 cut(s) 8, 317
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 2 cut(s) 67, 326
AluI AGCT 2 cut(s) 67, 326
Alw26I GTCTC 2 cut(s) 153, 198
AlwI GGATC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 425
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 425
AxyI CCTNAGG 1 cut(s) 42
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbrPI CACGTG 1 cut(s) 370
BbsI GAAGAC 2 cut(s) 26, 78
BbvI GCAGC 1 cut(s) 97
BclI TGATCA 1 cut(s) 268
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 153, 198
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 2 cut(s) 99, 426
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 2 cut(s) 26, 78
BpmI CTGGAG 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 423
BsaAI YACGTR 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 1 cut(s) 422
Bse21I CCTNAGG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 414
BseGI GGATG 2 cut(s) 37, 177
BseJI GATNNNNATC 1 cut(s) 414
BseMII CTCAG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 422, 428
BsmAI GTCTC 2 cut(s) 153, 198
Bsp143I GATC 4 cut(s) 268, 346, 403, 415
BspACI CCGC 2 cut(s) 11, 101
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 99, 426
BspPI GGATC 1 cut(s) 410
BssMI GATC 4 cut(s) 268, 346, 403, 415
BstAPI GCANNNNNTGC 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 37, 177
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 4 cut(s) 271, 349, 406, 418
BstMAI GTCTC 2 cut(s) 153, 198
BstMBI GATC 4 cut(s) 268, 346, 403, 415
BstMWI GCNNNNNNNGC 2 cut(s) 64, 252
BstSCI CCNGG 1 cut(s) 421
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 2 cut(s) 26, 78
Bsu36I CCTNAGG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 37, 177
BtsIMutI CAGTG 1 cut(s) 393
CciI TCATGA 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 7, 316
CviAII CATG 2 cut(s) 247, 272
CviJI RGCY 2 cut(s) 67, 326
CviKI_1 RGCY 2 cut(s) 67, 326
CviQI GTAC 2 cut(s) 7, 316
DdeI CTNAG 1 cut(s) 42
DpnI GATC 4 cut(s) 270, 348, 405, 417
DpnII GATC 4 cut(s) 268, 346, 403, 415
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 425
Eco72I CACGTG 1 cut(s) 370
Eco81I CCTNAGG 1 cut(s) 42
EcoRV GATATC 1 cut(s) 19
FaeI CATG 2 cut(s) 250, 275
FaiI YATR 9 cut(s) 53, 129, 248, 253, 273, 330, 332, 382, 414
FatI CATG 2 cut(s) 246, 271
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 2 cut(s) 24, 164
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 177
HapII CCGG 2 cut(s) 422, 428
Hin1II CATG 2 cut(s) 250, 275
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 3 cut(s) 124, 169, 398
HpaII CCGG 2 cut(s) 422, 428
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 82, 403
Hpy188III TCNNGA 3 cut(s) 41, 272, 407
Hpy8I GTNNAC 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 2 cut(s) 113, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 252
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 2 cut(s) 250, 275
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 4 cut(s) 268, 346, 403, 415
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 7 cut(s) 54, 72, 120, 134, 141, 399, 435
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 353, 365
MalI GATC 4 cut(s) 270, 348, 405, 417
MboI GATC 4 cut(s) 268, 346, 403, 415
MboII GAAGA 2 cut(s) 26, 83
MluCI AATT 2 cut(s) 142, 377
MlyI GAGTC 2 cut(s) 163, 392
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 4 cut(s) 7, 37, 88, 429
MslI CAYNNNNRTG 1 cut(s) 372
MspI CCGG 2 cut(s) 422, 428
MspR9I CCNGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 64, 252
NciI CCSGG 1 cut(s) 423
NdeII GATC 4 cut(s) 268, 346, 403, 415
NlaIII CATG 2 cut(s) 250, 275
NlaIV GGNNCC 2 cut(s) 99, 426
NmuCI GTSAC 1 cut(s) 365
OliI CACNNNNGTG 1 cut(s) 372
PagI TCATGA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 2 cut(s) 163, 392
PmaCI CACGTG 1 cut(s) 370
PmlI CACGTG 1 cut(s) 370
PpsI GAGTC 2 cut(s) 163, 392
Ppu21I YACGTR 1 cut(s) 370
PspCI CACGTG 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 99, 426
PspPI GGNCC 1 cut(s) 425
RsaI GTAC 2 cut(s) 8, 317
RsaNI GTAC 2 cut(s) 7, 316
RseI CAYNNNNRTG 1 cut(s) 372
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 4 cut(s) 268, 346, 403, 415
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 2 cut(s) 163, 392
ScrFI CCNGG 1 cut(s) 423
SetI ASST 6 cut(s) 69, 153, 328, 363, 367, 372
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 2 cut(s) 142, 377
SsiI CCGC 2 cut(s) 11, 101
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 421
TaiI ACGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 167, 282
TasI AATT 2 cut(s) 142, 377
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 26, 116
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 1 cut(s) 142
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.