Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003933

Physical Location & Seq

Genomic Coordinates Reverse (-)

657924 .. 661767

Gene Structure 3844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGGAGTTTGAAGTGAAGAACAAGCAAGTGTTGTTTAACAACTATGTAGAAGGCTTTCCCAAAGAGTCGGACATGATCGTTACCGATGCTTCCACCATCAGACTCAAAGTTCCGGCAGATGCTCCCAATTCCGTTTTGCTCAAGAACCTCTACTTGTCCTGCGATCCAGTCATGCGCATCCTCATGAGGAAACCTGGAGACGAAACTTCATCTTATTTTACGCCCTATGCCCCTGGCTCCCCTTTGAGTGGGTATGGAGTGGGTGAAGTTGTAGATTCTGGGAACCCAGACTTTAAGGAAGGTGACCTTGTCTGGGGAACAACCAAATGGGAACACTACACCTTAATCACACAACCAGAAAGCCTCCATAAGATCCAACACGCTGACGTTCCTCTTTCCTACTATACCGGTATACTTGGTATGCCTGGGATGACCGCCTATGCAGGCTTCAATGAAGTTTGTTCTCCTAAGAAGGGAGAATATGTCTTCATTTCAGCGGCATCAGGTGCCGTTGGTCAGCTGGTTGGACAATTAGCAAAATTGTTGGGTTGTTATGTCGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGACCTTTTGAAGAATAAGTTAAATTTTGATGAAGCTTTCAACTATAAGGAAGAGCATGACTTAACCGCGGCTCTGAAAAGGTATTTTCCAGAAGGCATTGACATATACTTTGAGAATGTTGGTGGAAAATTTCTGGATGCAGTCCTGCTCAACATGAGAGTCTTGCAGTGTGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.24

Weight (kDa)

5.13

Isoelectric Point (pI)

25.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	9 - 125	1.5e-22	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	171 - 247	5e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04180 FvH4_1g04360 FvH4_1g04421 FvH4_1g04461 FvH4_1g04542 FvH4_1g04780 FvH4_1g23532
malus_domestica	MD13G1159200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0090381
rosa_laevigata	RLG00000001042 RLG00000016106
rosa_multiflora	Rmu_sc0002131.1_g000021
rosa_rugosa	Rorug02G0006800 Rorug02G0007600 Rorug02G0007700 Rorug02G0007700 Rorug02G0007700 Rorug02G0007800 Rorug02G0007900
rosa_samantha	Rh2BG051800 Rh2BG051900 Rh2BG052500 Rh2CG053900 Rh2CG054000 Rh2CG054600 Rh2DG053000 Rh2DG053400 Rh7AG457100 Rh7AG457300 Rh7BG427900 Rh7CG475500 Rh7DG444500
rosa_wichuraiana	Rw2G004370 Rw7G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	415
AccII	CGCG	1 cut(s)	659
AciI	CCGC	5 cut(s)	5, 438, 500, 657, 659
AclWI	GGATC	2 cut(s)	161, 370
AcsI	RAATTY	2 cut(s)	613, 719
AfiI	CCNNNNNNNGG	3 cut(s)	251, 316, 476
AgeI	ACCGGT	1 cut(s)	410
AgsI	TTSAA	4 cut(s)	14, 454, 601, 631
AjnI	CCWGG	3 cut(s)	196, 235, 427
AluBI	AGCT	2 cut(s)	523, 626
AluI	AGCT	2 cut(s)	523, 626
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	161, 370
ApoI	RAATTY	2 cut(s)	613, 719
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AsiGI	ACCGGT	1 cut(s)	410
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	278, 317
BanI	GGYRCC	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	481
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	3 cut(s)	198, 237, 429
BcoDI	GTCTC	1 cut(s)	195
BisI	GCNGC	2 cut(s)	501, 660
BlsI	GCNGC	2 cut(s)	502, 661
Bme1390I	CCNGG	3 cut(s)	198, 237, 429
BmiI	GGNNCC	3 cut(s)	241, 287, 511
BmrFI	CCNGG	3 cut(s)	198, 237, 429
BmsI	GCATC	5 cut(s)	79, 112, 189, 512, 718
BpiI	GAAGAC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	235, 428, 657
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 316, 476
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	3 cut(s)	198, 237, 429
BseDI	CCNNGG	3 cut(s)	235, 428, 657
BseGI	GGATG	3 cut(s)	180, 438, 733
BseLI	CCNNNNNNNGG	3 cut(s)	251, 316, 476
BseNI	ACTGG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	509
BshTI	ACCGGT	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	116, 411
BslI	CCNNNNNNNGG	3 cut(s)	251, 316, 476
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	78, 166, 375
BspACI	CCGC	5 cut(s)	5, 438, 500, 657, 659
BspFNI	CGCG	1 cut(s)	659
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	3 cut(s)	241, 287, 511
BspPI	GGATC	2 cut(s)	161, 370
BspQI	GCTCTTC	1 cut(s)	636
BspT107I	GGYRCC	1 cut(s)	509
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	235, 428, 657
BssMI	GATC	3 cut(s)	78, 166, 375
BssNAI	GTATAC	1 cut(s)	416
Bst1107I	GTATAC	1 cut(s)	416
Bst2UI	CCWGG	3 cut(s)	198, 237, 429
Bst6I	CTCTTC	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	657
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	3 cut(s)	180, 438, 733
BstFNI	CGCG	1 cut(s)	659
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	3 cut(s)	81, 169, 378
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	3 cut(s)	78, 166, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	3 cut(s)	198, 237, 429
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	196, 235, 427
BstUI	CGCG	1 cut(s)	659
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BstZ17I	GTATAC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	657
BtsCI	GGATG	3 cut(s)	180, 438, 733
BtsI	GCAGTG	1 cut(s)	764
BtsIMutI	CAGTG	1 cut(s)	764
Cac8I	GCNNGC	1 cut(s)	448
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	410
Cfr42I	CCGCGG	1 cut(s)	660
CspAI	ACCGGT	1 cut(s)	410
CviAII	CATG	5 cut(s)	76, 175, 187, 647, 745
CviJI	RGCY	7 cut(s)	57, 240, 366, 450, 523, 626, 662
CviKI_1	RGCY	7 cut(s)	57, 240, 366, 450, 523, 626, 662
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	3 cut(s)	80, 168, 377
DpnII	GATC	3 cut(s)	78, 166, 375
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
EciI	GGCGGA	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	196, 235, 427
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	5 cut(s)	79, 178, 190, 650, 748
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	5 cut(s)	75, 174, 186, 646, 744
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	501, 660
FokI	GGATG	3 cut(s)	167, 445, 740
Fsp4HI	GCNGC	2 cut(s)	501, 660
FspAI	RTGCGCAY	1 cut(s)	179
FspI	TGCGCA	1 cut(s)	179
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	2 cut(s)	501, 660
GsuI	CTGGAG	1 cut(s)	219
HapII	CCGG	2 cut(s)	116, 411
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	79, 178, 190, 650, 748
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	4 cut(s)	68, 105, 278, 750
HpaII	CCGG	2 cut(s)	116, 411
HphI	GGTGA	2 cut(s)	278, 317
Hpy166II	GTNNAC	2 cut(s)	416, 592
Hpy188I	TCNGA	3 cut(s)	73, 104, 666
Hpy188III	TCNNGA	4 cut(s)	145, 187, 680, 725
Hpy8I	GTNNAC	2 cut(s)	416, 592
HpyAV	CCTTC	4 cut(s)	47, 296, 469, 677
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	3 cut(s)	446, 731, 757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	5 cut(s)	79, 178, 190, 650, 748
HspAI	GCGC	1 cut(s)	178
KspI	CCGCGG	1 cut(s)	660
Kzo9I	GATC	3 cut(s)	78, 166, 375
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	2 cut(s)	130, 245
LweI	GCATC	5 cut(s)	79, 112, 189, 512, 718
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	82, 305
MalI	GATC	3 cut(s)	80, 168, 377
MboI	GATC	3 cut(s)	78, 166, 375
MboII	GAAGA	4 cut(s)	31, 481, 613, 653
MflI	RGATCY	1 cut(s)	375
MluCI	AATT	5 cut(s)	130, 533, 542, 613, 719
MlyI	GAGTC	3 cut(s)	77, 99, 759
MmeI	TCCRAC	4 cut(s)	51, 403, 508, 544
MnlI	CCTC	5 cut(s)	161, 183, 194, 377, 405
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	5 cut(s)	39, 297, 347, 611, 653
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	3 cut(s)	500, 523, 659
MspI	CCGG	2 cut(s)	116, 411
MspR9I	CCNGG	3 cut(s)	198, 237, 429
MvaI	CCWGG	3 cut(s)	198, 237, 429
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	3 cut(s)	78, 166, 375
NlaIII	CATG	5 cut(s)	79, 178, 190, 650, 748
NlaIV	GGNNCC	3 cut(s)	241, 287, 511
NmuCI	GTSAC	1 cut(s)	305
NsbI	TGCGCA	1 cut(s)	179
PagI	TCATGA	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	311
PinAI	ACCGGT	1 cut(s)	410
PkrI	GCNGC	2 cut(s)	502, 661
PleI	GAGTC	3 cut(s)	76, 99, 758
PpsI	GAGTC	3 cut(s)	76, 99, 758
Psp6I	CCWGG	3 cut(s)	196, 235, 427
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	196, 235, 427
PspN4I	GGNNCC	3 cut(s)	241, 287, 511
PsuI	RGATCY	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	185
SacII	CCGCGG	1 cut(s)	660
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	5 cut(s)	39, 297, 347, 611, 653
SatI	GCNGC	2 cut(s)	501, 660
Sau3AI	GATC	3 cut(s)	78, 166, 375
SchI	GAGTC	3 cut(s)	77, 99, 759
ScrFI	CCNGG	3 cut(s)	198, 237, 429
SfaNI	GCATC	5 cut(s)	79, 112, 189, 512, 718
Sfr303I	CCGCGG	1 cut(s)	660
SgrBI	CCGCGG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	5 cut(s)	130, 533, 542, 613, 719
SsiI	CCGC	5 cut(s)	5, 438, 500, 657, 659
StyD4I	CCNGG	3 cut(s)	196, 235, 427
TaiI	ACGT	1 cut(s)	393
TasI	AATT	5 cut(s)	130, 533, 542, 613, 719
TauI	GCSGC	2 cut(s)	503, 662
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	5 cut(s)	39, 297, 347, 611, 653
Tru9I	TTAA	5 cut(s)	39, 297, 347, 611, 653
TscAI	CASTG	1 cut(s)	764
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	201, 471, 481, 636
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	764
Tth111I	GACNNNGTC	1 cut(s)	311
XapI	RAATTY	2 cut(s)	613, 719
XmiI	GTMKAC	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.