Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003933

Physical Location & Seq

Genomic Coordinates Reverse (-)

4243563 .. 4245811

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGCGTGATGCCTTCCCGTGCCCGACGAGGATCCGATCAGGTGCCCCAACTAGCAAAGCGGCTTAGCAGGGCCGATGAGAACCGGGCCGGATCCTCGACCAAGCAGCTTGATCCTGCAGGTAGCAGCAAAGAAAAACCAAAGACTGCTGGAGGCAATTTCACTCAAGTCCTCCAGCGTGTTGAAAACTCTTTGATTCATAATGCCGACGAAAAATCACAGTGCCCCGACAGATCATATGTATGGCACAACGGATTTTATCGACTCAATTATTGTGATCTTTGTAGTGACTTTGGTCACGTAGGTGAGTTGTGCCCTCTCAACGAGTTTGATATGGACTATGATGCTCCAGGAAGCGACTGGCATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

5.76

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04180 FvH4_1g04360 FvH4_1g04421 FvH4_1g04461 FvH4_1g04542 FvH4_1g04780 FvH4_1g23532
malus_domestica	MD13G1159200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0090381
rosa_laevigata	RLG00000001042 RLG00000016106
rosa_multiflora	Rmu_sc0002131.1_g000021
rosa_rugosa	Rorug02G0006800 Rorug02G0007600 Rorug02G0007700 Rorug02G0007700 Rorug02G0007700 Rorug02G0007800 Rorug02G0007900
rosa_samantha	Rh2BG051800 Rh2BG051900 Rh2BG052500 Rh2CG053900 Rh2CG054000 Rh2CG054600 Rh2DG053000 Rh2DG053400 Rh7AG457100 Rh7AG457300 Rh7BG427900 Rh7CG475500 Rh7DG444500
rosa_wichuraiana	Rw2G004370 Rw7G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	5 cut(s)	27, 40, 87, 100, 107
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	349
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
AlwI	GGATC	5 cut(s)	27, 40, 87, 100, 107
AoxI	GGCC	2 cut(s)	72, 87
ApeKI	GCWGC	2 cut(s)	106, 126
AspS9I	GGNCC	2 cut(s)	72, 87
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	317
BaeGI	GKGCMC	4 cut(s)	25, 48, 227, 317
BamHI	GGATCC	2 cut(s)	32, 92
BanI	GGYRCC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	118, 138
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	3 cut(s)	62, 107, 127
BlpI	GCTNAGC	1 cut(s)	65
BlsI	GCNGC	3 cut(s)	63, 108, 128
Bme1390I	CCNGG	2 cut(s)	86, 351
BmgT120I	GGNCC	2 cut(s)	72, 87
BmiI	GGNNCC	3 cut(s)	34, 45, 94
BmrFI	CCNGG	2 cut(s)	86, 351
BmsI	GCATC	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	294
BpmI	CTGGAG	3 cut(s)	158, 171, 333
Bpu1102I	GCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	365
BseSI	GKGCMC	4 cut(s)	25, 48, 227, 317
BseXI	GCAGC	2 cut(s)	118, 138
BshFI	GGCC	2 cut(s)	74, 89
BshNI	GGYRCC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	85, 90
BsnI	GGCC	2 cut(s)	74, 89
Bsp1286I	GDGCHC	4 cut(s)	25, 48, 227, 317
Bsp143I	GATC	6 cut(s)	32, 37, 92, 112, 233, 277
Bsp1720I	GCTNAGC	1 cut(s)	65
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	74, 89
BspLI	GGNNCC	3 cut(s)	34, 45, 94
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	5 cut(s)	27, 40, 87, 100, 107
BspT107I	GGYRCC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	365
BssMI	GATC	6 cut(s)	32, 37, 92, 112, 233, 277
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	65
BstKTI	GATC	6 cut(s)	35, 40, 95, 115, 236, 280
BstMBI	GATC	6 cut(s)	32, 37, 92, 112, 233, 277
BstNI	CCWGG	1 cut(s)	351
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	84, 349
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	4 cut(s)	25, 48, 227, 317
BstV1I	GCAGC	2 cut(s)	118, 138
BstX2I	RGATCY	2 cut(s)	32, 92
BstYI	RGATCY	2 cut(s)	32, 92
BsuRI	GGCC	2 cut(s)	74, 89
BtsIMutI	CAGTG	1 cut(s)	227
BveI	ACCTGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	72, 87
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	4 cut(s)	64, 74, 89, 109
CviKI_1	RGCY	4 cut(s)	64, 74, 89, 109
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	6 cut(s)	34, 39, 94, 114, 235, 279
DpnII	GATC	6 cut(s)	32, 37, 92, 112, 233, 277
EcoRII	CCWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	368
FaiI	YATR	7 cut(s)	201, 238, 240, 244, 335, 342, 366
FatI	CATG	1 cut(s)	364
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	62, 107, 127
Fsp4HI	GCNGC	3 cut(s)	62, 107, 127
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	3 cut(s)	62, 107, 127
GsuI	CTGGAG	3 cut(s)	158, 171, 333
HaeIII	GGCC	2 cut(s)	74, 89
HapII	CCGG	2 cut(s)	85, 90
Hin1II	CATG	1 cut(s)	368
HinfI	GANTC	2 cut(s)	196, 264
HpaII	CCGG	2 cut(s)	85, 90
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	37
Hpy99I	CGWCG	2 cut(s)	30, 212
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	368
Kzo9I	GATC	6 cut(s)	32, 37, 92, 112, 233, 277
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	2 cut(s)	118, 138
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	287, 296
MalI	GATC	6 cut(s)	34, 39, 94, 114, 235, 279
MboI	GATC	6 cut(s)	32, 37, 92, 112, 233, 277
MflI	RGATCY	2 cut(s)	32, 92
MhlI	GDGCHC	4 cut(s)	25, 48, 227, 317
MluCI	AATT	2 cut(s)	157, 268
MlyI	GAGTC	1 cut(s)	258
MnlI	CCTC	5 cut(s)	23, 106, 146, 182, 327
MseI	TTAA	1 cut(s)	370
MslI	CAYNNNNRTG	2 cut(s)	241, 303
MspI	CCGG	2 cut(s)	85, 90
MspR9I	CCNGG	2 cut(s)	86, 351
MvaI	CCWGG	1 cut(s)	351
NciI	CCSGG	1 cut(s)	86
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	6 cut(s)	32, 37, 92, 112, 233, 277
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	3 cut(s)	34, 45, 94
NmuCI	GTSAC	2 cut(s)	287, 296
OliI	CACNNNNGTG	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	63, 108, 128
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
Ppu21I	YACGTR	1 cut(s)	301
PshAI	GACNNNNGTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	3 cut(s)	34, 45, 94
PspPI	GGNCC	2 cut(s)	72, 87
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	32, 92
RseI	CAYNNNNRTG	2 cut(s)	241, 303
SaqAI	TTAA	1 cut(s)	370
SatI	GCNGC	3 cut(s)	62, 107, 127
Sau3AI	GATC	6 cut(s)	32, 37, 92, 112, 233, 277
Sau96I	GGNCC	2 cut(s)	72, 87
SbfI	CCTGCAGG	1 cut(s)	121
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	2 cut(s)	86, 351
SdaI	CCTGCAGG	1 cut(s)	121
SduI	GDGCHC	4 cut(s)	25, 48, 227, 317
SetI	ASST	5 cut(s)	45, 111, 124, 303, 307
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	2 cut(s)	241, 303
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse8387I	CCTGCAGG	1 cut(s)	121
Sse9I	AATT	2 cut(s)	157, 268
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	84, 349
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	98, 262
TasI	AATT	2 cut(s)	157, 268
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	370
Tru9I	TTAA	1 cut(s)	370
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	2 cut(s)	287, 296
TseI	GCWGC	2 cut(s)	106, 126
Tsp45I	GTSAC	2 cut(s)	287, 296
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.