Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003933

Physical Location & Seq

Genomic Coordinates Reverse (-)

62760875 .. 62761342

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG457300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGTACCCGGAGGATATCTTGGTAGAGTGTCTTCATCCCGAGGATAACAAACTGCCAGAAAAGCCAGAAGACTACTATGGAATCTTCAATGAGGAAGCAGAGCTTGAAATCATCAAAGAGGAACCGCACCCTGCTGCACACTCTTTGATTCATATTGCTGACAAAAATTCACAGGTTGCTGGAGACTGTTCGACTAAAATCATCCAAGAAAAACCACAGGTTGTTGGAGACTTTTCGACTGAAAATGCCAAAGATATGCTTAGTTATTGCATGATATGCGGTAAGAATACTGATCATGACACTTTCAATTGCCCCGACAAAGAAACGGGATTTGTGTGGTACAAAGGAGTTTATATGCCCAATTTTTGTGATCTTTGTAGTAAGATAAGTCACGTGGGTCAATTATGCCCTGTTGACACTGACTCTGATCTTGATTATGATCCTCCGGGACTGGAGATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.61

Weight (kDa)

4.31

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04180 FvH4_1g04360 FvH4_1g04421 FvH4_1g04461 FvH4_1g04542 FvH4_1g04780 FvH4_1g23532
malus_domestica	MD13G1159200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0090381
rosa_laevigata	RLG00000001042 RLG00000016106
rosa_multiflora	Rmu_sc0002131.1_g000021
rosa_rugosa	Rorug02G0006800 Rorug02G0007600 Rorug02G0007700 Rorug02G0007700 Rorug02G0007700 Rorug02G0007800 Rorug02G0007900
rosa_samantha	Rh2BG051800 Rh2BG051900 Rh2BG052500 Rh2CG053900 Rh2CG054000 Rh2CG054600 Rh2DG053000 Rh2DG053400 Rh7AG457100 Rh7AG457300 Rh7BG427900 Rh7CG475500 Rh7DG444500
rosa_wichuraiana	Rw2G004370 Rw7G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	128, 282
AclWI	GGATC	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	169
AcvI	CACGTG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	8, 344
AgsI	TTSAA	3 cut(s)	91, 110, 310
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw26I	GTCTC	2 cut(s)	180, 225
AlwI	GGATC	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	169
AsuC2I	CCSGG	2 cut(s)	11, 450
AvaI	CYCGRG	1 cut(s)	41
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BbrPI	CACGTG	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	26, 78
BbvI	GCAGC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	2 cut(s)	11, 450
BcoDI	GTCTC	2 cut(s)	180, 225
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	11, 450
BmeT110I	CYCGRG	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	2 cut(s)	11, 450
BpiI	GAAGAC	2 cut(s)	26, 78
BpmI	CTGGAG	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	11, 450
BsaAI	YACGTR	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	37, 204
BseJI	GATNNNNATC	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	11, 449
BsmAI	GTCTC	2 cut(s)	180, 225
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	295, 373, 430, 442
BspACI	CCGC	2 cut(s)	128, 282
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	4 cut(s)	295, 373, 430, 442
Bst4CI	ACNGT	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	37, 204
BstKTI	GATC	4 cut(s)	298, 376, 433, 445
BstMAI	GTCTC	2 cut(s)	180, 225
BstMBI	GATC	4 cut(s)	295, 373, 430, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 279
BstSCI	CCNGG	2 cut(s)	9, 448
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	2 cut(s)	26, 78
BtsCI	GGATG	2 cut(s)	37, 204
BtsIMutI	CAGTG	1 cut(s)	420
CciI	TCATGA	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	7, 343
CviAII	CATG	2 cut(s)	274, 299
CviJI	RGCY	2 cut(s)	67, 106
CviKI_1	RGCY	2 cut(s)	67, 106
CviQI	GTAC	2 cut(s)	7, 343
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	4 cut(s)	297, 375, 432, 444
DpnII	GATC	4 cut(s)	295, 373, 430, 442
Eco32I	GATATC	1 cut(s)	19
Eco72I	CACGTG	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	2 cut(s)	277, 302
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 246, 278
FatI	CATG	2 cut(s)	273, 298
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	24, 191
Fsp4HI	GCNGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	204
HapII	CCGG	2 cut(s)	11, 449
Hin1II	CATG	2 cut(s)	277, 302
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	84, 151, 425
HpaII	CCGG	2 cut(s)	11, 449
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	3 cut(s)	41, 299, 434
Hpy8I	GTNNAC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	2 cut(s)	140, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 279
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	2 cut(s)	277, 302
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	295, 373, 430, 442
Lsp1109I	GCAGC	1 cut(s)	124
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	4 cut(s)	297, 375, 432, 444
MboI	GATC	4 cut(s)	295, 373, 430, 442
MboII	GAAGA	3 cut(s)	26, 79, 83
MfeI	CAATTG	1 cut(s)	310
MluCI	AATT	4 cut(s)	169, 310, 364, 404
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	5 cut(s)	7, 37, 88, 115, 456
MspI	CCGG	2 cut(s)	11, 449
MspR9I	CCNGG	2 cut(s)	11, 450
MunI	CAATTG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	64, 279
NciI	CCSGG	2 cut(s)	11, 450
NdeII	GATC	4 cut(s)	295, 373, 430, 442
NlaIII	CATG	2 cut(s)	277, 302
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	392
PagI	TCATGA	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	84, 151
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	419
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	419
Ppu21I	YACGTR	1 cut(s)	397
PspCI	CACGTG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	126
RsaI	GTAC	2 cut(s)	8, 344
RsaNI	GTAC	2 cut(s)	7, 343
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	4 cut(s)	295, 373, 430, 442
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	11, 450
SetI	ASST	4 cut(s)	108, 180, 225, 399
Sse9I	AATT	4 cut(s)	169, 310, 364, 404
SsiI	CCGC	2 cut(s)	128, 282
StyD4I	CCNGG	2 cut(s)	9, 448
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	194, 239
TasI	AATT	4 cut(s)	169, 310, 364, 404
TfiI	GAWTC	2 cut(s)	84, 151
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	26, 143
TspRI	CASTG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.