RchiOBHm_Chr2g0090381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003933
Physical Location & Seq
Reverse (-)
4220660 .. 4223323
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46563

Sequence Viewer

Length: 378 bp
ATGAGAACCCTAGAGAGCAAGCTGCTTGATCCTGCAGGTAGCAGCAAAGAAAAACCAAAGACTGCTGGAGACAATTTCACTCAAGTCCTCCAGTGTGTTGAAAACTCTTTGATTCATGACACCGACGAAAAATCACTGGTTGCAGGAGATTCTTCCACTGGAACCGTCAACCGAGTAGCTTCATATTGTAAGCTGTGTCGTAAGTATACTGATCACAGAACTAGACAGTGCCCCGACAAATCATATGTATGGTATAACGGACATTATAAACTCAATTATTGTGATCTTTGTAGTGACTTTGGTCACGTAGGTCAGTTGTGCCCTCTCAACGAGTTTGATATGGACTATGATGCTCCAGGAAGCGACTGGCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.15

Weight (kDa)

5.44

Isoelectric Point (pI)

22.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 206
AclWI GGATC 1 cut(s) 23
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 3 cut(s) 22, 179, 193
AluI AGCT 3 cut(s) 22, 179, 193
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 22, 42
BaeGI GKGCMC 2 cut(s) 233, 323
BbvI GCAGC 2 cut(s) 9, 54
BciT130I CCWGG 1 cut(s) 357
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 2 cut(s) 11, 222
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 2 cut(s) 23, 43
BlsI GCNGC 2 cut(s) 24, 44
Bme1390I CCNGG 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 340
BoxI GACNNNNGTC 1 cut(s) 300
BpmI CTGGAG 3 cut(s) 74, 87, 339
BpuEI CTTGAG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 307
Bse1I ACTGG 4 cut(s) 91, 141, 163, 371
BseBI CCWGG 1 cut(s) 357
BseNI ACTGG 4 cut(s) 91, 141, 163, 371
BseSI GKGCMC 2 cut(s) 233, 323
BseXI GCAGC 2 cut(s) 9, 54
BsmAI GTCTC 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 233, 323
Bsp143I GATC 3 cut(s) 28, 211, 283
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 4 cut(s) 91, 141, 163, 371
BssMI GATC 3 cut(s) 28, 211, 283
BssNAI GTATAC 1 cut(s) 207
Bst1107I GTATAC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 166, 228
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 31, 214, 286
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 28, 211, 283
BstNI CCWGG 1 cut(s) 357
BstPAI GACNNNNGTC 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 2 cut(s) 233, 323
BstV1I GCAGC 2 cut(s) 9, 54
BstZ17I GTATAC 1 cut(s) 207
BtsIMutI CAGTG 4 cut(s) 98, 134, 156, 233
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 115
CviAII CATG 2 cut(s) 116, 371
CviJI RGCY 3 cut(s) 22, 179, 193
CviKI_1 RGCY 3 cut(s) 22, 179, 193
DpnI GATC 3 cut(s) 30, 213, 285
DpnII GATC 3 cut(s) 28, 211, 283
EcoRII CCWGG 1 cut(s) 355
FaeI CATG 2 cut(s) 119, 374
FatI CATG 2 cut(s) 115, 370
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 2 cut(s) 23, 43
Fsp4HI GCNGC 2 cut(s) 23, 43
FspBI CTAG 2 cut(s) 11, 222
GluI GCNGC 2 cut(s) 23, 43
GsuI CTGGAG 3 cut(s) 74, 87, 339
Hin1II CATG 2 cut(s) 119, 374
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 112, 149
Hpy166II GTNNAC 2 cut(s) 169, 207
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 2 cut(s) 169, 207
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 166, 228
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 35, 143
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 2 cut(s) 119, 374
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 28, 211, 283
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 2 cut(s) 9, 54
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 11, 222
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 293, 302
MalI GATC 3 cut(s) 30, 213, 285
MboI GATC 3 cut(s) 28, 211, 283
MboII GAAGA 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 233, 323
MluCI AATT 2 cut(s) 73, 274
MnlI CCTC 2 cut(s) 98, 333
MseI TTAA 1 cut(s) 376
MslI CAYNNNNRTG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 244
NdeII GATC 3 cut(s) 28, 211, 283
NlaIII CATG 2 cut(s) 119, 374
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 293, 302
PagI TCATGA 1 cut(s) 115
PfeI GAWTC 2 cut(s) 112, 149
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 2 cut(s) 24, 44
Ppu21I YACGTR 1 cut(s) 307
PshAI GACNNNNGTC 1 cut(s) 300
PsiI TTATAA 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 2 cut(s) 23, 43
Sau3AI GATC 3 cut(s) 28, 211, 283
SbfI CCTGCAGG 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 357
SdaI CCTGCAGG 1 cut(s) 37
SduI GDGCHC 2 cut(s) 233, 323
SetI ASST 6 cut(s) 24, 40, 181, 195, 309, 313
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse8387I CCTGCAGG 1 cut(s) 37
Sse9I AATT 2 cut(s) 73, 274
SspMI CTAG 2 cut(s) 11, 222
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 166, 228
TaiI ACGT 1 cut(s) 309
TasI AATT 2 cut(s) 73, 274
TfiI GAWTC 2 cut(s) 112, 149
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TscAI CASTG 4 cut(s) 98, 141, 163, 233
TseFI GTSAC 2 cut(s) 293, 302
TseI GCWGC 2 cut(s) 22, 42
Tsp45I GTSAC 2 cut(s) 293, 302
TspDTI ATGAA 2 cut(s) 104, 171
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 4 cut(s) 98, 141, 163, 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 2 cut(s) 11, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.