FvH4_1g04780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003933
Physical Location & Seq
Reverse (-)
2523947 .. 2525274
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04780.t1

Sequence Viewer

Length: 393 bp
ATGAGCCCTCTTGTTGACGTAACGGAGCAGATTAGTGTTGATCGGGCAAACCAAAGGCAATTGTTAATTCCAGCAAGTATTACAGAAGCCAAAGAACAATACAGCAACGCAGAAGAACAACCAAAGACTGTTGGAGACTACTCGGCTCAGATCATCCAAGAAAAACCACAGCCCGCTGTATACTCTTTGATTCATCTTGCTCACGAGAACTCCCCAACTGATAACAGGATCCGCCATAGGAGTAGTACTCTTAGCACTTTCGAAGGCCCCGAAAAATCAATGGCATTTGTACAACATGATGGAGTTTATGAACTCAATTTTTGTGATATTTGTAATAAGATGGGTCACCTGGATAAATTGTGCCCTCTAAGTCGACTGTTATATGGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.67

Weight (kDa)

5.45

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 180, 373
AciI CCGC 2 cut(s) 174, 232
AclWI GGATC 2 cut(s) 223, 236
AcoI YGGCCR 1 cut(s) 385
AfaI GTAC 2 cut(s) 247, 291
AjnI CCWGG 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 2 cut(s) 223, 236
AoxI GGCC 2 cut(s) 265, 385
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 338
AsuII TTCGAA 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 387
BamHI GGATCC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 203
BccI CCATC 2 cut(s) 293, 334
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 129
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 2 cut(s) 230, 268
BmrFI CCNGG 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 232, 264
Bpu14I TTCGAA 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bse1I ACTGG 1 cut(s) 388
BseBI CCWGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 388
BseSI GKGCMC 1 cut(s) 365
BshFI GGCC 2 cut(s) 267, 387
BsmAI GTCTC 1 cut(s) 129
BsnI GGCC 2 cut(s) 267, 387
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 8, 365
Bsp1407I TGTACA 1 cut(s) 289
Bsp143I GATC 3 cut(s) 40, 150, 228
BspACI CCGC 2 cut(s) 174, 232
BspANI GGCC 2 cut(s) 267, 387
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 230, 268
BspPI GGATC 2 cut(s) 223, 236
BspT104I TTCGAA 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 289
BsrI ACTGG 1 cut(s) 388
BssMI GATC 3 cut(s) 40, 150, 228
BssNAI GTATAC 1 cut(s) 181
BssSI CACGAG 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 130, 378
BstAUI TGTACA 1 cut(s) 289
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 147, 251, 368
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 3 cut(s) 43, 153, 231
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 40, 150, 228
BstNI CCWGG 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BstZ17I GTATAC 1 cut(s) 181
BsuRI GGCC 2 cut(s) 267, 387
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 246, 290
CviAII CATG 1 cut(s) 296
CviJI RGCY 6 cut(s) 6, 89, 146, 172, 267, 387
CviKI_1 RGCY 6 cut(s) 6, 89, 146, 172, 267, 387
CviQI GTAC 2 cut(s) 246, 290
DdeI CTNAG 3 cut(s) 147, 251, 368
DpnI GATC 3 cut(s) 42, 152, 230
DpnII GATC 3 cut(s) 40, 150, 228
EaeI YGGCCR 1 cut(s) 385
EciI GGCGGA 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 8
Eco91I GGTNACC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 299
FaiI YATR 6 cut(s) 181, 237, 297, 309, 382, 384
FatI CATG 1 cut(s) 295
FauI CCCGC 1 cut(s) 181
FblI GTMKAC 2 cut(s) 180, 373
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 8
HaeIII GGCC 2 cut(s) 267, 387
Hin1II CATG 1 cut(s) 299
HincII GTYRAC 2 cut(s) 16, 374
HindII GTYRAC 2 cut(s) 16, 374
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 3 cut(s) 16, 181, 374
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 3 cut(s) 16, 181, 374
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 130, 378
HpyCH4IV ACGT 1 cut(s) 18
HpyF3I CTNAG 3 cut(s) 147, 251, 368
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 299
Kzo9I GATC 3 cut(s) 40, 150, 228
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 84, 211, 335, 362
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 19, 344
MalI GATC 3 cut(s) 42, 152, 230
MboI GATC 3 cut(s) 40, 150, 228
MboII GAAGA 1 cut(s) 125
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 2 cut(s) 8, 365
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 4 cut(s) 59, 66, 316, 356
MluNI TGGCCA 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 2 cut(s) 18, 375
Mox20I TGGCCA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 387
MseI TTAA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 350
NdeII GATC 3 cut(s) 40, 150, 228
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 2 cut(s) 230, 268
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 344
NspV TTCGAA 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 348
PspEI GGTNACC 1 cut(s) 344
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 230, 268
PspPI GGNCC 1 cut(s) 266
PsuI RGATCY 1 cut(s) 228
RsaI GTAC 2 cut(s) 247, 291
RsaNI GTAC 2 cut(s) 246, 290
SalI GTCGAC 1 cut(s) 372
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 3 cut(s) 40, 150, 228
Sau96I GGNCC 1 cut(s) 266
ScaI AGTACT 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 2 cut(s) 8, 365
SetI ASST 2 cut(s) 21, 351
SfuI TTCGAA 1 cut(s) 261
Sse9I AATT 4 cut(s) 59, 66, 316, 356
SsiI CCGC 2 cut(s) 174, 232
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 130, 378
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 261, 373
TasI AATT 4 cut(s) 59, 66, 316, 356
TatI WGTACW 2 cut(s) 245, 289
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 182, 324
TspGWI ACGGA 1 cut(s) 38
XmiI GTMKAC 2 cut(s) 180, 373
ZrmI AGTACT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.