Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002131.1

Orthogroup ID

OG0003933

Physical Location & Seq

Genomic Coordinates Reverse (-)

62740 .. 64770

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002131.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggagtacccggaggatatcttggtagagtgtcttcatcccgaggataacaaactgccagaaaagccagaagactactatggaatcttcaaagaggaaccgcaccctgctgcacactctttgattcatattgctgacaaaaattcacaggttgctggaggctgttcgactaaaatcatccaagaaaaaccacaggttgttggagacttttcgactgaaaatgccaaagatatgcttagttattgcatgatatgcggtaagaatactgatcatgacactttcaattgccccgacaaagaaacgggatttgtgtggtacaaaggagtttatatgcccaatttttgtgatctttgtagtaagataagtcacgtgggtcaattatgccctgttgacactgactctgatcttgattatgatcctccgggactggagatgtggcccgttgggacaaagaaaattcctgaggctaattatggcaaagtcaaaggtggaaagaaccccaatgcaaagggggttggacgtgctgatccctacccacgtggcaacaatgcaccacgtggcaagggacgtggggtcgtggaggctcgcccaatgtatagcgcagagatggtgtgtggagtcatggggcattggtacaagaactgccaagcaagcaacagagtagcagccaattacaagaggtataaggggtctaaagaacaagaggctcactatatggaagaaggaggccatgatccagacgtgaacctcacaattgcagacttcaatggcaacaaggaacttgctcagtcaatggatgcttcagattttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

271

Amino Acids

30.11

Weight (kDa)

5.23

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04180 FvH4_1g04360 FvH4_1g04421 FvH4_1g04461 FvH4_1g04542 FvH4_1g04780 FvH4_1g23532
malus_domestica	MD13G1159200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0090381
rosa_laevigata	RLG00000001042 RLG00000016106
rosa_multiflora	Rmu_sc0002131.1_g000021
rosa_rugosa	Rorug02G0006800 Rorug02G0007600 Rorug02G0007700 Rorug02G0007700 Rorug02G0007700 Rorug02G0007800 Rorug02G0007900
rosa_samantha	Rh2BG051800 Rh2BG051900 Rh2BG052500 Rh2CG053900 Rh2CG054000 Rh2CG054600 Rh2DG053000 Rh2DG053400 Rh7AG457100 Rh7AG457300 Rh7BG427900 Rh7CG475500 Rh7DG444500
rosa_wichuraiana	Rw2G004370 Rw7G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	101, 255
AclWI	GGATC	3 cut(s)	410, 521, 728
AcsI	RAATTY	2 cut(s)	142, 456
AcuI	CTGAAG	1 cut(s)	786
AcvI	CACGTG	3 cut(s)	370, 539, 557
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	3 cut(s)	8, 317, 635
AgsI	TTSAA	3 cut(s)	91, 283, 766
AhdI	GACNNNNNGTC	1 cut(s)	572
AjiI	CACGTC	3 cut(s)	521, 569, 742
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	3 cut(s)	410, 521, 728
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	437, 727
ApeKI	GCWGC	2 cut(s)	110, 665
ApoI	RAATTY	2 cut(s)	142, 456
AspLEI	GCGC	1 cut(s)	602
AspS9I	GGNCC	1 cut(s)	438
AsuC2I	CCSGG	2 cut(s)	11, 423
AvaI	CYCGRG	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	462
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BbrPI	CACGTG	3 cut(s)	370, 539, 557
BbsI	GAAGAC	2 cut(s)	26, 78
BbvI	GCAGC	2 cut(s)	97, 677
BccI	CCATC	1 cut(s)	601
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	2 cut(s)	11, 423
BcoDI	GTCTC	1 cut(s)	198
BisI	GCNGC	2 cut(s)	111, 666
BlsI	GCNGC	2 cut(s)	112, 667
Bme1390I	CCNGG	2 cut(s)	11, 423
BmeRI	GACNNNNNGTC	1 cut(s)	572
BmeT110I	CYCGRG	1 cut(s)	41
BmgBI	CACGTC	3 cut(s)	521, 569, 742
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	11, 423
BmsI	GCATC	1 cut(s)	787
BpiI	GAAGAC	2 cut(s)	26, 78
BpmI	CTGGAG	2 cut(s)	177, 449
BpuMI	CCSGG	2 cut(s)	11, 423
BsaAI	YACGTR	3 cut(s)	370, 539, 557
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	432
Bse21I	CCTNAGG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	3 cut(s)	37, 177, 802
BseJI	GATNNNNATC	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	453, 800
BseNI	ACTGG	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	97, 677
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	439, 729
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	11, 422
BslFI	GGGAC	3 cut(s)	438, 460, 579
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	3 cut(s)	438, 460, 579
BsnI	GGCC	2 cut(s)	439, 729
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	6 cut(s)	268, 346, 403, 415, 526, 733
BspACI	CCGC	2 cut(s)	101, 255
BspANI	GGCC	2 cut(s)	439, 729
BspCNI	CTCAG	2 cut(s)	454, 799
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	3 cut(s)	410, 521, 728
BsrI	ACTGG	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	6 cut(s)	268, 346, 403, 415, 526, 733
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstBAI	YACGTR	3 cut(s)	370, 539, 557
BstC8I	GCNNGC	2 cut(s)	586, 652
BstDEI	CTNAG	3 cut(s)	236, 462, 786
BstF5I	GGATG	3 cut(s)	37, 177, 802
BstHHI	GCGC	1 cut(s)	602
BstKTI	GATC	6 cut(s)	271, 349, 406, 418, 529, 736
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	6 cut(s)	268, 346, 403, 415, 526, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 252, 651
BstSCI	CCNGG	2 cut(s)	9, 421
BstV1I	GCAGC	2 cut(s)	97, 677
BstV2I	GAAGAC	2 cut(s)	26, 78
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	439, 729
BtrI	CACGTC	3 cut(s)	521, 569, 742
BtsCI	GGATG	3 cut(s)	37, 177, 802
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	586, 652
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	602
Cfr13I	GGNCC	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	7, 316, 634
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	4 cut(s)	247, 272, 622, 731
CviJI	RGCY	8 cut(s)	67, 162, 439, 467, 584, 668, 707, 729
CviKI_1	RGCY	8 cut(s)	67, 162, 439, 467, 584, 668, 707, 729
CviQI	GTAC	3 cut(s)	7, 316, 634
DdeI	CTNAG	3 cut(s)	236, 462, 786
DpnI	GATC	6 cut(s)	270, 348, 405, 417, 528, 735
DpnII	GATC	6 cut(s)	268, 346, 403, 415, 526, 733
DraIII	CACNNNGTG	1 cut(s)	557
DriI	GACNNNNNGTC	1 cut(s)	572
Eam1105I	GACNNNNNGTC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	786
Eco72I	CACGTG	3 cut(s)	370, 539, 557
Eco81I	CCTNAGG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	4 cut(s)	250, 275, 625, 734
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	3 cut(s)	438, 460, 579
FatI	CATG	4 cut(s)	246, 271, 621, 730
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	111, 666
FokI	GGATG	3 cut(s)	24, 164, 809
Fsp4HI	GCNGC	2 cut(s)	111, 666
GlaI	GCGC	1 cut(s)	601
GluI	GCNGC	2 cut(s)	111, 666
GsuI	CTGGAG	2 cut(s)	177, 449
HaeIII	GGCC	2 cut(s)	439, 729
HapII	CCGG	2 cut(s)	11, 422
HhaI	GCGC	1 cut(s)	602
Hin1II	CATG	4 cut(s)	250, 275, 625, 734
Hin6I	GCGC	1 cut(s)	600
HinP1I	GCGC	1 cut(s)	600
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	4 cut(s)	84, 124, 398, 618
HpaII	CCGG	2 cut(s)	11, 422
Hpy166II	GTNNAC	2 cut(s)	391, 745
Hpy188I	TCNGA	2 cut(s)	403, 805
Hpy188III	TCNNGA	5 cut(s)	41, 272, 407, 461, 737
Hpy8I	GTNNAC	2 cut(s)	391, 745
HpyAV	CCTTC	1 cut(s)	716
HpyCH4IV	ACGT	6 cut(s)	369, 520, 538, 556, 568, 741
HpyCH4V	TGCA	5 cut(s)	113, 246, 506, 551, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 252, 651
HpyF3I	CTNAG	3 cut(s)	236, 462, 786
HpySE526I	ACGT	6 cut(s)	369, 520, 538, 556, 568, 741
Hsp92II	CATG	4 cut(s)	250, 275, 625, 734
HspAI	GCGC	1 cut(s)	600
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	268, 346, 403, 415, 526, 733
Lsp1109I	GCAGC	2 cut(s)	97, 677
LweI	GCATC	1 cut(s)	787
MaeII	ACGT	6 cut(s)	369, 520, 538, 556, 568, 741
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	6 cut(s)	270, 348, 405, 417, 528, 735
MboI	GATC	6 cut(s)	268, 346, 403, 415, 526, 733
MboII	GAAGA	4 cut(s)	26, 79, 83, 731
MfeI	CAATTG	2 cut(s)	283, 753
MluCI	AATT	8 cut(s)	142, 283, 337, 377, 456, 469, 670, 753
MlyI	GAGTC	2 cut(s)	392, 627
MmeI	TCCRAC	2 cut(s)	181, 496
MspI	CCGG	2 cut(s)	11, 422
MspR9I	CCNGG	2 cut(s)	11, 423
MunI	CAATTG	2 cut(s)	283, 753
MwoI	GCNNNNNNNGC	3 cut(s)	64, 252, 651
NciI	CCSGG	2 cut(s)	11, 423
NdeII	GATC	6 cut(s)	268, 346, 403, 415, 526, 733
NlaIII	CATG	4 cut(s)	250, 275, 625, 734
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	365
PagI	TCATGA	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	84, 124
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	112, 667
PleI	GAGTC	2 cut(s)	392, 626
PmaCI	CACGTG	3 cut(s)	370, 539, 557
PmlI	CACGTG	3 cut(s)	370, 539, 557
PpsI	GAGTC	2 cut(s)	392, 626
Ppu21I	YACGTR	3 cut(s)	370, 539, 557
PspCI	CACGTG	3 cut(s)	370, 539, 557
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	438
RsaI	GTAC	3 cut(s)	8, 317, 635
RsaNI	GTAC	3 cut(s)	7, 316, 634
SatI	GCNGC	2 cut(s)	111, 666
Sau3AI	GATC	6 cut(s)	268, 346, 403, 415, 526, 733
Sau96I	GGNCC	1 cut(s)	438
SchI	GAGTC	2 cut(s)	392, 627
ScrFI	CCNGG	2 cut(s)	11, 423
SfaNI	GCATC	1 cut(s)	787
Sse9I	AATT	8 cut(s)	142, 283, 337, 377, 456, 469, 670, 753
SsiI	CCGC	2 cut(s)	101, 255
StyD4I	CCNGG	2 cut(s)	9, 421
TaiI	ACGT	6 cut(s)	372, 523, 541, 559, 571, 744
TaqI	TCGA	2 cut(s)	167, 212
TasI	AATT	8 cut(s)	142, 283, 337, 377, 456, 469, 670, 753
TfiI	GAWTC	2 cut(s)	84, 124
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	2 cut(s)	110, 665
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	26, 116
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	2 cut(s)	142, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.