Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003933

Physical Location & Seq

Genomic Coordinates Reverse (-)

63116578 .. 63118135

Gene Structure 1558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG444500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGTACCCGGAGGAGGATATCTTGGTAGAGTGTCTTCACCCTGAGGATAACAAACTGCCAGAAAAGCCAGAAGACTACTATGAAATCATCAATGAGGAAGCACAGCCTGAAATCATCAAAGAGGAACCGCACCCTGCTGCACACTCTTTGATTCATATTGCTGACAAAAATTCACAGGTTGCTGGAGACTATTCGACTCAAATCATCCAAGAAAAACCACAGGTTGTCGGAGACTTTTCGACTGAAAATGCCAAAAAGATGCTTTGTTATTGCATGGTATGCGGTAAGAATACTGATCATGGCACTTTCAATTGCCCCGACAAAGAAACGGGATTTGTGTGGTACAAAGGAGTTTACATGCCCAACTTTTGTGATCTTTGTAATAAGATAGGTCACGTGGGTGAATTATGCCCTGTTGACACTGACTCTGATCTTGATTTTGATCCTCCGGGACCGGAGATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.74

Weight (kDa)

4.33

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04180 FvH4_1g04360 FvH4_1g04421 FvH4_1g04461 FvH4_1g04542 FvH4_1g04780 FvH4_1g23532
malus_domestica	MD13G1159200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0090381
rosa_laevigata	RLG00000001042 RLG00000016106
rosa_multiflora	Rmu_sc0002131.1_g000021
rosa_rugosa	Rorug02G0006800 Rorug02G0007600 Rorug02G0007700 Rorug02G0007700 Rorug02G0007700 Rorug02G0007800 Rorug02G0007900
rosa_samantha	Rh2BG051800 Rh2BG051900 Rh2BG052500 Rh2CG053900 Rh2CG054000 Rh2CG054600 Rh2DG053000 Rh2DG053400 Rh7AG457100 Rh7AG457300 Rh7BG427900 Rh7CG475500 Rh7DG444500
rosa_wichuraiana	Rw2G004370 Rw7G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	131, 285
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	172
AcvI	CACGTG	1 cut(s)	400
AfaI	GTAC	2 cut(s)	8, 347
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	313
AleI	CACNNNNGTG	1 cut(s)	402
Alw26I	GTCTC	2 cut(s)	183, 228
AlwI	GGATC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	455
AsuC2I	CCSGG	2 cut(s)	11, 453
AsuHPI	GGTGA	2 cut(s)	32, 416
AvaII	GGWCC	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	45
BarI	GAAGNNNNNNTAC	2 cut(s)	21, 53
BbrPI	CACGTG	1 cut(s)	400
BbsI	GAAGAC	2 cut(s)	29, 81
BbvI	GCAGC	1 cut(s)	127
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	11, 453
BcoDI	GTCTC	2 cut(s)	183, 228
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	11, 453
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	129, 456
BmrFI	CCNGG	2 cut(s)	11, 453
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	2 cut(s)	29, 81
BpmI	CTGGAG	1 cut(s)	207
BpuMI	CCSGG	2 cut(s)	11, 453
BsaAI	YACGTR	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse21I	CCTNAGG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	444
BseGI	GGATG	1 cut(s)	207
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	11, 452, 458
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	183, 228
Bsp143I	GATC	4 cut(s)	298, 376, 433, 445
BspACI	CCGC	2 cut(s)	131, 285
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	129, 456
BspPI	GGATC	1 cut(s)	440
BssMI	GATC	4 cut(s)	298, 376, 433, 445
BstAPI	GCANNNNNTGC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	4 cut(s)	301, 379, 436, 448
BstMAI	GTCTC	2 cut(s)	183, 228
BstMBI	GATC	4 cut(s)	298, 376, 433, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 282
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	9, 451
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	2 cut(s)	29, 81
Bsu36I	CCTNAGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	7, 346
CviAII	CATG	3 cut(s)	277, 302, 361
CviJI	RGCY	2 cut(s)	70, 109
CviKI_1	RGCY	2 cut(s)	70, 109
CviQI	GTAC	2 cut(s)	7, 346
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	4 cut(s)	300, 378, 435, 447
DpnII	GATC	4 cut(s)	298, 376, 433, 445
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	455
Eco72I	CACGTG	1 cut(s)	400
Eco81I	CCTNAGG	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	22
FaeI	CATG	3 cut(s)	280, 305, 364
FaiI	YATR	7 cut(s)	84, 159, 278, 283, 303, 362, 412
FatI	CATG	3 cut(s)	276, 301, 360
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	207
HapII	CCGG	3 cut(s)	11, 452, 458
Hin1II	CATG	3 cut(s)	280, 305, 364
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	154, 199, 428
HpaII	CCGG	3 cut(s)	11, 452, 458
HphI	GGTGA	2 cut(s)	32, 416
Hpy166II	GTNNAC	2 cut(s)	358, 421
Hpy188I	TCNGA	2 cut(s)	233, 433
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	2 cut(s)	358, 421
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	143, 276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 282
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	280, 305, 364
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	298, 376, 433, 445
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	252
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	4 cut(s)	300, 378, 435, 447
MboI	GATC	4 cut(s)	298, 376, 433, 445
MboII	GAAGA	2 cut(s)	29, 86
MfeI	CAATTG	1 cut(s)	313
MluCI	AATT	3 cut(s)	172, 313, 407
MlyI	GAGTC	2 cut(s)	193, 422
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	6 cut(s)	7, 10, 40, 91, 118, 459
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	3 cut(s)	11, 452, 458
MspR9I	CCNGG	2 cut(s)	11, 453
MunI	CAATTG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	67, 282
NciI	CCSGG	2 cut(s)	11, 453
NdeII	GATC	4 cut(s)	298, 376, 433, 445
NlaIII	CATG	3 cut(s)	280, 305, 364
NlaIV	GGNNCC	2 cut(s)	129, 456
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	1 cut(s)	364
OliI	CACNNNNGTG	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	154
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	193, 422
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	2 cut(s)	193, 422
Ppu21I	YACGTR	1 cut(s)	400
PspCI	CACGTG	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	129, 456
PspPI	GGNCC	1 cut(s)	455
RsaI	GTAC	2 cut(s)	8, 347
RsaNI	GTAC	2 cut(s)	7, 346
RseI	CAYNNNNRTG	1 cut(s)	402
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	4 cut(s)	298, 376, 433, 445
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	2 cut(s)	193, 422
ScrFI	CCNGG	2 cut(s)	11, 453
SetI	ASST	4 cut(s)	183, 228, 397, 402
SfaNI	GCATC	1 cut(s)	252
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	3 cut(s)	172, 313, 407
SsiI	CCGC	2 cut(s)	131, 285
StyD4I	CCNGG	2 cut(s)	9, 451
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	197, 242
TasI	AATT	3 cut(s)	172, 313, 407
TfiI	GAWTC	1 cut(s)	154
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	99, 146
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.