RLG00000001042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003933
Physical Location & Seq
Forward (+)
9641331 .. 9641804
474 bp
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UTR
Exon/CDS
Intron
RLM00000001042

Sequence Viewer

Length: 435 bp
ATGGCGTTCCCGGAGGAGGATATCTTGGTTATGGAGTGTCTTCATCCTGAGGATAACAAACTGCCAGAAAAGCCAGAAGACTACTATGAAATCATCAATGAGGAAGCACAGCCTGAAATCATCAAAGAGGAACCGCACCCTGCTGTTGCTGGAGACTATTCGACTCAAATCATCCAAGAAAAACCACAGGTTGTTGGAGACTTTTCGACTGAAAATGCCGAAAAGATGCTTTCTTATTGCATGATATGCGATAAGAATACTGATCACGATACTTTCAATTGCCCCGACAAAGAAACGGGATTTGTGTGGTACAAAGGAGTTTATATGCCCAACGTTTGTGATCTTTGTAATAAGGTAGGTCACGTGGGTCAATTATGCCCTGTTGACACTGACTCTGATCTTGATTATGATCCTCCGGGACCGGAGATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.45

Weight (kDa)

4.1

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AclI AACGTT 1 cut(s) 333
AclWI GGATC 1 cut(s) 404
AcvI CACGTG 1 cut(s) 364
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 147, 192
AlwI GGATC 1 cut(s) 404
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 2 cut(s) 11, 417
AvaII GGWCC 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 48
BbrPI CACGTG 1 cut(s) 364
BbsI GAAGAC 2 cut(s) 32, 84
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 11, 417
BcoDI GTCTC 2 cut(s) 147, 192
Bme1390I CCNGG 2 cut(s) 11, 417
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 2 cut(s) 132, 420
BmrFI CCNGG 2 cut(s) 11, 417
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 2 cut(s) 32, 84
BpmI CTGGAG 1 cut(s) 171
BpuMI CCSGG 2 cut(s) 11, 417
BsaAI YACGTR 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse21I CCTNAGG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 408
BseGI GGATG 2 cut(s) 43, 171
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 29
BsiSI CCGG 3 cut(s) 11, 416, 422
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 147, 192
Bsp143I GATC 4 cut(s) 262, 340, 397, 409
BspACI CCGC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 132, 420
BspPI GGATC 1 cut(s) 404
BssMI GATC 4 cut(s) 262, 340, 397, 409
BstAPI GCANNNNNTGC 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 43, 171
BstKTI GATC 4 cut(s) 265, 343, 400, 412
BstMAI GTCTC 2 cut(s) 147, 192
BstMBI GATC 4 cut(s) 262, 340, 397, 409
BstMWI GCNNNNNNNGC 2 cut(s) 70, 246
BstSCI CCNGG 2 cut(s) 9, 415
BstV2I GAAGAC 2 cut(s) 32, 84
Bsu36I CCTNAGG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 43, 171
BtsIMutI CAGTG 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 241
CviJI RGCY 2 cut(s) 73, 112
CviKI_1 RGCY 2 cut(s) 73, 112
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 48
DpnI GATC 4 cut(s) 264, 342, 399, 411
DpnII GATC 4 cut(s) 262, 340, 397, 409
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 419
Eco72I CACGTG 1 cut(s) 364
Eco81I CCTNAGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 22
FaeI CATG 1 cut(s) 244
FaiI YATR 8 cut(s) 32, 87, 242, 247, 324, 326, 376, 408
FatI CATG 1 cut(s) 240
FbaI TGATCA 1 cut(s) 262
FokI GGATG 2 cut(s) 30, 158
GsuI CTGGAG 1 cut(s) 171
HapII CCGG 3 cut(s) 11, 416, 422
Hin1II CATG 1 cut(s) 244
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 2 cut(s) 163, 392
HpaII CCGG 3 cut(s) 11, 416, 422
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 3 cut(s) 47, 266, 401
Hpy8I GTNNAC 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 333, 363
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 246
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 2 cut(s) 333, 363
Hsp92II CATG 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 262, 340, 397, 409
LweI GCATC 1 cut(s) 216
MaeII ACGT 2 cut(s) 333, 363
MaeIII GTNAC 1 cut(s) 359
MalI GATC 4 cut(s) 264, 342, 399, 411
MboI GATC 4 cut(s) 262, 340, 397, 409
MboII GAAGA 2 cut(s) 32, 89
MfeI CAATTG 1 cut(s) 277
MluCI AATT 2 cut(s) 277, 371
MlyI GAGTC 2 cut(s) 157, 386
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 6 cut(s) 7, 10, 43, 94, 121, 423
MspI CCGG 3 cut(s) 11, 416, 422
MspR9I CCNGG 2 cut(s) 11, 417
MunI CAATTG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 70, 246
NciI CCSGG 2 cut(s) 11, 417
NdeII GATC 4 cut(s) 262, 340, 397, 409
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 132, 420
NmuCI GTSAC 1 cut(s) 359
PfoI TCCNGGA 2 cut(s) 9, 415
PleI GAGTC 2 cut(s) 157, 386
PmaCI CACGTG 1 cut(s) 364
PmlI CACGTG 1 cut(s) 364
PpsI GAGTC 2 cut(s) 157, 386
Ppu21I YACGTR 1 cut(s) 364
Psp1406I AACGTT 1 cut(s) 333
PspCI CACGTG 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 132, 420
PspPI GGNCC 1 cut(s) 419
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
Sau3AI GATC 4 cut(s) 262, 340, 397, 409
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 2 cut(s) 157, 386
ScrFI CCNGG 2 cut(s) 11, 417
SetI ASST 5 cut(s) 192, 336, 357, 361, 366
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 1 cut(s) 419
Sse9I AATT 2 cut(s) 277, 371
SsiI CCGC 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 9, 415
TaiI ACGT 2 cut(s) 336, 366
TaqI TCGA 2 cut(s) 161, 206
TasI AATT 2 cut(s) 277, 371
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 32, 102
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.