Rw7G037890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003933
Physical Location & Seq
Reverse (-)
57493355 .. 57493795
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037890.1

Sequence Viewer

Length: 441 bp
ATGGAGTACCCGGAGGATATCTTGGTAGAGTGTCTTCATCCCGAGGATAACAAACTGCCAGAAAAGCCAGAAGACTACTATGGAATCTTCAAAGAGGAACCGCACCCTGCTGCACACTCTTTGATTCATATTGCTGACAAAAATTCACAGGTTGCTGGAGGCTGTTCGACTAAAATCATCCAAGAAAAACCACAGGTTGTTGGAGACTTTTCGACTGAAAATGCCAAAGATATGCTTAGTTATTGCATGATATGCGGTAAGAATACTGATCATGACACTTTCAATTGCCCCGACAAAGAAACGGGATTTGTGTGGTACAAAGGAGTTTATATGCCCAATTTTTGTGATCTTTGTAGTAAGATAAGTCACGTGGGTCAATTATGCCCTGTTGACACTGACTCTGATCTTGATTATGATCCTCCGGGACTGGAGATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.51

Weight (kDa)

4.46

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 101, 255
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 1 cut(s) 142
AcvI CACGTG 1 cut(s) 370
AfaI GTAC 2 cut(s) 8, 317
AgsI TTSAA 2 cut(s) 91, 283
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 142
AsuC2I CCSGG 2 cut(s) 11, 423
AvaI CYCGRG 1 cut(s) 41
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbrPI CACGTG 1 cut(s) 370
BbsI GAAGAC 2 cut(s) 26, 78
BbvI GCAGC 1 cut(s) 97
BclI TGATCA 1 cut(s) 268
BcnI CCSGG 2 cut(s) 11, 423
BcoDI GTCTC 1 cut(s) 198
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 11, 423
BmeT110I CYCGRG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 2 cut(s) 11, 423
BpiI GAAGAC 2 cut(s) 26, 78
BpmI CTGGAG 1 cut(s) 177
BpuMI CCSGG 2 cut(s) 11, 423
BsaAI YACGTR 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 432
Bse8I GATNNNNATC 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 37, 177
BseJI GATNNNNATC 1 cut(s) 414
BseNI ACTGG 1 cut(s) 432
BseXI GCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 2 cut(s) 11, 422
BsmAI GTCTC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 41
Bsp143I GATC 4 cut(s) 268, 346, 403, 415
BspACI CCGC 2 cut(s) 101, 255
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 4 cut(s) 268, 346, 403, 415
BstAPI GCANNNNNTGC 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 37, 177
BstKTI GATC 4 cut(s) 271, 349, 406, 418
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 4 cut(s) 268, 346, 403, 415
BstMWI GCNNNNNNNGC 2 cut(s) 64, 252
BstSCI CCNGG 2 cut(s) 9, 421
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 2 cut(s) 26, 78
BtsCI GGATG 2 cut(s) 37, 177
BtsIMutI CAGTG 1 cut(s) 393
CciI TCATGA 1 cut(s) 271
Csp6I GTAC 2 cut(s) 7, 316
CviAII CATG 2 cut(s) 247, 272
CviJI RGCY 2 cut(s) 67, 162
CviKI_1 RGCY 2 cut(s) 67, 162
CviQI GTAC 2 cut(s) 7, 316
DdeI CTNAG 1 cut(s) 236
DpnI GATC 4 cut(s) 270, 348, 405, 417
DpnII GATC 4 cut(s) 268, 346, 403, 415
Eco32I GATATC 1 cut(s) 19
Eco72I CACGTG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 41
EcoRV GATATC 1 cut(s) 19
FaeI CATG 2 cut(s) 250, 275
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 2 cut(s) 246, 271
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 2 cut(s) 24, 164
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 177
HapII CCGG 2 cut(s) 11, 422
Hin1II CATG 2 cut(s) 250, 275
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 3 cut(s) 84, 124, 398
HpaII CCGG 2 cut(s) 11, 422
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 3 cut(s) 41, 272, 407
Hpy8I GTNNAC 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 2 cut(s) 113, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 252
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 2 cut(s) 250, 275
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 4 cut(s) 268, 346, 403, 415
Lsp1109I GCAGC 1 cut(s) 97
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 365
MalI GATC 4 cut(s) 270, 348, 405, 417
MboI GATC 4 cut(s) 268, 346, 403, 415
MboII GAAGA 3 cut(s) 26, 79, 83
MfeI CAATTG 1 cut(s) 283
MluCI AATT 4 cut(s) 142, 283, 337, 377
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 5 cut(s) 7, 37, 88, 152, 429
MspI CCGG 2 cut(s) 11, 422
MspR9I CCNGG 2 cut(s) 11, 423
MunI CAATTG 1 cut(s) 283
MwoI GCNNNNNNNGC 2 cut(s) 64, 252
NciI CCSGG 2 cut(s) 11, 423
NdeII GATC 4 cut(s) 268, 346, 403, 415
NlaIII CATG 2 cut(s) 250, 275
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 365
PagI TCATGA 1 cut(s) 271
PfeI GAWTC 2 cut(s) 84, 124
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 392
PmaCI CACGTG 1 cut(s) 370
PmlI CACGTG 1 cut(s) 370
PpsI GAGTC 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 370
PspCI CACGTG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 99
RsaI GTAC 2 cut(s) 8, 317
RsaNI GTAC 2 cut(s) 7, 316
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 4 cut(s) 268, 346, 403, 415
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 11, 423
SetI ASST 3 cut(s) 153, 198, 372
Sse9I AATT 4 cut(s) 142, 283, 337, 377
SsiI CCGC 2 cut(s) 101, 255
StyD4I CCNGG 2 cut(s) 9, 421
TaiI ACGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 167, 212
TasI AATT 4 cut(s) 142, 283, 337, 377
TfiI GAWTC 2 cut(s) 84, 124
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 26, 116
TspRI CASTG 1 cut(s) 400
XapI RAATTY 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.