Rh2BG051900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003933
Physical Location & Seq
Reverse (-)
3677912 .. 3678268
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG051900.1

Sequence Viewer

Length: 357 bp
ATGGAATTGCAAACAGGTAGCAGCAAAGAAAAACCAAAGACTGCTGGAGGCAATTTCACTCAAGTCCTCCAGCGTGTTGAAAACTCTTTGATTCATAATGCCGACGAAAAATCACAGGTTTCAGGAGATTCTTCCACTAGAACCGTCAACAAAGTACCTTCGTATTGTAAGCTGTGTCGTAAGTATACTGATCACAGAACTGTACAGTGCCCCGACAGATCATATGTATGGCACAACGGATTTTATCGACTCAATTATTGTGATCTTTGTAGTGACTTTGGTCACGTAGGTGAGTTGTGCCCTCTCAACGAGTTTGATATGGACTATGATGCTCCAGGAAGCGACTGGCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.47

Weight (kDa)

5.66

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 185
AfaI GTAC 2 cut(s) 156, 204
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 334
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 302
BaeGI GKGCMC 2 cut(s) 212, 302
BbvI GCAGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 190
BfaI CTAG 1 cut(s) 138
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 319
BoxI GACNNNNGTC 1 cut(s) 279
BpmI CTGGAG 3 cut(s) 53, 66, 318
BpuEI CTTGAG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 350
BseSI GKGCMC 2 cut(s) 212, 302
BseXI GCAGC 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 212, 302
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 3 cut(s) 190, 218, 262
BsrGI TGTACA 1 cut(s) 202
BsrI ACTGG 1 cut(s) 350
BssMI GATC 3 cut(s) 190, 218, 262
BssNAI GTATAC 1 cut(s) 186
Bst1107I GTATAC 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 145, 202, 207
BstAUI TGTACA 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 286
BstKTI GATC 3 cut(s) 193, 221, 265
BstMBI GATC 3 cut(s) 190, 218, 262
BstNI CCWGG 1 cut(s) 336
BstPAI GACNNNNGTC 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 2 cut(s) 212, 302
BstV1I GCAGC 1 cut(s) 33
BstZ17I GTATAC 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 212
Csp6I GTAC 2 cut(s) 155, 203
CviAII CATG 1 cut(s) 350
CviJI RGCY 1 cut(s) 172
CviKI_1 RGCY 1 cut(s) 172
CviQI GTAC 2 cut(s) 155, 203
DpnI GATC 3 cut(s) 192, 220, 264
DpnII GATC 3 cut(s) 190, 218, 262
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 353
FaiI YATR 8 cut(s) 96, 186, 223, 225, 229, 320, 327, 351
FatI CATG 1 cut(s) 349
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 190
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 22
GsuI CTGGAG 3 cut(s) 53, 66, 318
Hin1II CATG 1 cut(s) 353
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 91, 128, 249
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 148, 186
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 2 cut(s) 148, 186
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 3 cut(s) 145, 202, 207
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 3 cut(s) 190, 218, 262
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 7 cut(s) 30, 83, 101, 108, 321, 331, 348
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 272, 281
MalI GATC 3 cut(s) 192, 220, 264
MboI GATC 3 cut(s) 190, 218, 262
MboII GAAGA 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 212, 302
MluCI AATT 3 cut(s) 5, 52, 253
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 3 cut(s) 41, 77, 312
MseI TTAA 1 cut(s) 355
MslI CAYNNNNRTG 2 cut(s) 226, 288
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 223
NdeII GATC 3 cut(s) 190, 218, 262
NlaIII CATG 1 cut(s) 353
NmuCI GTSAC 2 cut(s) 272, 281
OliI CACNNNNGTG 1 cut(s) 288
PfeI GAWTC 2 cut(s) 91, 128
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 286
PshAI GACNNNNGTC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
RsaI GTAC 2 cut(s) 156, 204
RsaNI GTAC 2 cut(s) 155, 203
RseI CAYNNNNRTG 2 cut(s) 226, 288
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 3 cut(s) 190, 218, 262
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 2 cut(s) 212, 302
SetI ASST 6 cut(s) 19, 120, 160, 174, 288, 292
SfaNI GCATC 1 cut(s) 319
SmiMI CAYNNNNRTG 2 cut(s) 226, 288
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 3 cut(s) 5, 52, 253
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 145, 202, 207
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 247
TasI AATT 3 cut(s) 5, 52, 253
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 2 cut(s) 91, 128
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 2 cut(s) 272, 281
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 2 cut(s) 272, 281
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.