Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003933

Physical Location & Seq

Genomic Coordinates Reverse (-)

48848081 .. 48848947

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG427900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGTACCCGGAGGAGGTGGATTTCGTGGTTATAGAGCGTCTTGATCCTGAGGATGACAAACTGCCAGAAAAGCCAGAAGACTACTATGAAATCTTCAATGAGGAAGCAGAGCTTGAAATCATCAAAGAGGAACCGCACCCTGCTGCACACTCTTTGATTCATATTGCTGACAAAAATTCACAGGTTGCTGGAGACTGTTCGACTCAAATCATCCAAGAAAAACCACAGGTTGTTGGAGACTTTTCGACTGAAAATGCCAAAGATATGCTTAGTTATTGCATGATATGCGGTAAGAATACTGATCATGACACTTTCACTTGCCCCGACAAAGAAACGGGATTTGTGTGGTACAAAGGAGTTTATATGCCCAATTTTTGTGATCTTTGTAGTAAGATAGGTCACGTGGGTCAATTATGCCCTGTTGACACTGACCCTGATCTTGATTATGATCCTCCGGGACTGGAGATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

18.04

Weight (kDa)

4.15

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04180 FvH4_1g04360 FvH4_1g04421 FvH4_1g04461 FvH4_1g04542 FvH4_1g04780 FvH4_1g23532
malus_domestica	MD13G1159200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0090381
rosa_laevigata	RLG00000001042 RLG00000016106
rosa_multiflora	Rmu_sc0002131.1_g000021
rosa_rugosa	Rorug02G0006800 Rorug02G0007600 Rorug02G0007700 Rorug02G0007700 Rorug02G0007700 Rorug02G0007800 Rorug02G0007900
rosa_samantha	Rh2BG051800 Rh2BG051900 Rh2BG052500 Rh2CG053900 Rh2CG054000 Rh2CG054600 Rh2DG053000 Rh2DG053400 Rh7AG457100 Rh7AG457300 Rh7BG427900 Rh7CG475500 Rh7DG444500
rosa_wichuraiana	Rw2G004370 Rw7G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	137, 291
AclWI	GGATC	2 cut(s)	41, 446
AcsI	RAATTY	1 cut(s)	178
AcvI	CACGTG	1 cut(s)	406
AfaI	GTAC	2 cut(s)	8, 353
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	100, 119
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	189, 234
AlwI	GGATC	2 cut(s)	41, 446
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	11, 459
AxyI	CCTNAGG	1 cut(s)	51
BbrPI	CACGTG	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	2 cut(s)	11, 459
BcoDI	GTCTC	2 cut(s)	189, 234
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	11, 459
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	11, 459
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	213
BpuMI	CCSGG	2 cut(s)	11, 459
BsaAI	YACGTR	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	450
BsaXI	ACNNNNNCTCC	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	468
Bse21I	CCTNAGG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	450
BseGI	GGATG	2 cut(s)	61, 213
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	11, 458
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	189, 234
Bsp143I	GATC	5 cut(s)	46, 304, 382, 439, 451
BspACI	CCGC	2 cut(s)	137, 291
BspCNI	CTCAG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	41, 446
BsrI	ACTGG	1 cut(s)	468
BssMI	GATC	5 cut(s)	46, 304, 382, 439, 451
Bst4CI	ACNGT	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	51, 272
BstF5I	GGATG	2 cut(s)	61, 213
BstKTI	GATC	5 cut(s)	49, 307, 385, 442, 454
BstMAI	GTCTC	2 cut(s)	189, 234
BstMBI	GATC	5 cut(s)	46, 304, 382, 439, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 288
BstSCI	CCNGG	2 cut(s)	9, 457
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	61, 213
BtsIMutI	CAGTG	1 cut(s)	429
CciI	TCATGA	1 cut(s)	307
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	7, 352
CviAII	CATG	2 cut(s)	283, 308
CviJI	RGCY	2 cut(s)	76, 115
CviKI_1	RGCY	2 cut(s)	76, 115
CviQI	GTAC	2 cut(s)	7, 352
DdeI	CTNAG	2 cut(s)	51, 272
DpnI	GATC	5 cut(s)	48, 306, 384, 441, 453
DpnII	GATC	5 cut(s)	46, 304, 382, 439, 451
Eco72I	CACGTG	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	286, 311
FalI	AAGNNNNNCTT	4 cut(s)	99, 131, 255, 287
FatI	CATG	2 cut(s)	282, 307
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	68, 200
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	213
HapII	CCGG	2 cut(s)	11, 458
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	286, 311
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	2 cut(s)	160, 205
HpaII	CCGG	2 cut(s)	11, 458
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188III	TCNNGA	4 cut(s)	44, 50, 308, 443
Hpy8I	GTNNAC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	149, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 288
HpyF3I	CTNAG	2 cut(s)	51, 272
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	286, 311
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	5 cut(s)	46, 304, 382, 439, 451
Lsp1109I	GCAGC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	5 cut(s)	48, 306, 384, 441, 453
MboI	GATC	5 cut(s)	46, 304, 382, 439, 451
MboII	GAAGA	2 cut(s)	88, 92
MluCI	AATT	3 cut(s)	178, 373, 413
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	6 cut(s)	7, 10, 46, 97, 124, 465
MspI	CCGG	2 cut(s)	11, 458
MspR9I	CCNGG	2 cut(s)	11, 459
MwoI	GCNNNNNNNGC	2 cut(s)	73, 288
NciI	CCSGG	2 cut(s)	11, 459
NdeII	GATC	5 cut(s)	46, 304, 382, 439, 451
NlaIII	CATG	2 cut(s)	286, 311
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	401
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	199
PmaCI	CACGTG	1 cut(s)	406
PmlI	CACGTG	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	406
PspCI	CACGTG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	135
RsaI	GTAC	2 cut(s)	8, 353
RsaNI	GTAC	2 cut(s)	7, 352
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	5 cut(s)	46, 304, 382, 439, 451
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	11, 459
SetI	ASST	6 cut(s)	21, 117, 189, 234, 403, 408
Sse9I	AATT	3 cut(s)	178, 373, 413
SsiI	CCGC	2 cut(s)	137, 291
StyD4I	CCNGG	2 cut(s)	9, 457
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	203, 248
TasI	AATT	3 cut(s)	178, 373, 413
TfiI	GAWTC	1 cut(s)	160
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	105, 152
TspRI	CASTG	1 cut(s)	436
XapI	RAATTY	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.