Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003933

Physical Location & Seq

Genomic Coordinates Reverse (-)

12528525 .. 12530013

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1159200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTGTATATACACTAGTTCTCTTTTGTTTCCTAATTTTAGTTGCTTGTACATGTTTCCCATATATACCGAGCTTTTTGGCTTTGTCGTTCTCGTCGTCTCCCATTGTTTTTATTTGTATTCGACATCAAAATGGAACTGCTATGTGAAAACAGATAGCGAGGCAGAAGAACAGGCAAAGGTTCCATATTGTTACCGATCTTTGCTTGATATAGTTCAAAGAAGATACTCTTCAGCGTCTACTTATGATGTGCCCAAAGATAGCAAGGCAGAAGAACAACCAAAGGTTCAAGACTCTCGCCAAGTTGTGGTTGATGAAATTCAAAAAGGATCGTGTTCACCGTTGACTCATTATGAGTGTCGCCCTGCGGACAACTTCGCGCATTGGCTGGCTATAGTGGAAGAATTCAATGAACGAAAGGCTGCTGGCTCTGGGACTAAACTCACACCTGAAGAAGAAGCAAAACTTAGATATGGTCCTTGTGAATGTTGTGGAAAGGAGAAAGACCACGCGACTAAAAACTGCCCTCTGAAGACTATTAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.93

Weight (kDa)

6.11

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04180 FvH4_1g04360 FvH4_1g04421 FvH4_1g04461 FvH4_1g04542 FvH4_1g04780 FvH4_1g23532
malus_domestica	MD13G1159200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0090381
rosa_laevigata	RLG00000001042 RLG00000016106
rosa_multiflora	Rmu_sc0002131.1_g000021
rosa_rugosa	Rorug02G0006800 Rorug02G0007600 Rorug02G0007700 Rorug02G0007700 Rorug02G0007700 Rorug02G0007800 Rorug02G0007900
rosa_samantha	Rh2BG051800 Rh2BG051900 Rh2BG052500 Rh2CG053900 Rh2CG054000 Rh2CG054600 Rh2DG053000 Rh2DG053400 Rh7AG457100 Rh7AG457300 Rh7BG427900 Rh7CG475500 Rh7DG444500
rosa_wichuraiana	Rw2G004370 Rw7G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	239
AccII	CGCG	2 cut(s)	380, 512
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	318, 404
AcuI	CTGAAG	2 cut(s)	216, 471
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	4 cut(s)	218, 290, 323, 409
AhlI	ACTAGT	1 cut(s)	14
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	2 cut(s)	318, 404
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	103
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	2 cut(s)	380, 512
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	197, 329
BspACI	CCGC	1 cut(s)	368
BspFNI	CGCG	2 cut(s)	380, 512
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	337
BsrGI	TGTACA	1 cut(s)	48
BssMI	GATC	2 cut(s)	197, 329
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	235
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	390, 427
BstDEI	CTNAG	1 cut(s)	467
BstFNI	CGCG	2 cut(s)	380, 512
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	2 cut(s)	200, 332
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	2 cut(s)	197, 329
BstNSI	RCATGY	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	255
BstUI	CGCG	2 cut(s)	380, 512
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	539
Cac8I	GCNNGC	2 cut(s)	390, 427
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	6 cut(s)	73, 81, 388, 392, 422, 429
CviKI_1	RGCY	6 cut(s)	73, 81, 388, 392, 422, 429
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	2 cut(s)	199, 331
DpnII	GATC	2 cut(s)	197, 329
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	216, 471
EcoRI	GAATTC	1 cut(s)	404
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	1 cut(s)	55
FalI	AAGNNNNNCTT	4 cut(s)	214, 246, 450, 482
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	423
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	2 cut(s)	293, 346
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	3 cut(s)	240, 338, 345
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	3 cut(s)	240, 338, 345
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	467
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	197, 329
LpnPI	CCDG	6 cut(s)	158, 374, 378, 411, 417, 462
Lsp1109I	GCAGC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	199, 331
MboI	GATC	2 cut(s)	197, 329
MboII	GAAGA	8 cut(s)	179, 222, 234, 284, 413, 464, 467, 544
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	3 cut(s)	34, 318, 404
MlyI	GAGTC	2 cut(s)	287, 340
MnlI	CCTC	2 cut(s)	154, 537
MseI	TTAA	1 cut(s)	547
MslI	CAYNNNNRTG	1 cut(s)	130
MvnI	CGCG	2 cut(s)	380, 512
NdeII	GATC	2 cut(s)	197, 329
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	183
NspI	RCATGY	1 cut(s)	55
PciI	ACATGT	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 338
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	287, 340
PpsI	GAGTC	2 cut(s)	287, 340
PscI	ACATGT	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	476
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	547
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	2 cut(s)	197, 329
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	2 cut(s)	287, 340
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	5 cut(s)	75, 183, 288, 451, 545
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	130
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	3 cut(s)	34, 318, 404
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	122
TasI	AATT	3 cut(s)	34, 318, 404
TatI	WGTACW	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	547
Tru9I	TTAA	1 cut(s)	547
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	330, 426
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	2 cut(s)	318, 404
XceI	RCATGY	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.