Rh2DG053400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003933
Physical Location & Seq
Reverse (-)
3851393 .. 3851773
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG053400.1

Sequence Viewer

Length: 381 bp
ATGGAAGACGAACCACAGCCTGAAATCATCAAAGAGGAACCACACCCGGCTGGACACTCTATGAATCATATTGCTGACAAAAATTCACAGGTTGCTGGAGACTATTCGACTCAAGTGATTCAAGAAAAACCACAGGTTGTTGGAGACTTTTCGACTGAAAATGCCAAAGAGATGCTTTGTTATTGCATGGTATGCGGGAAGAATACTGATCATGGCACTTTCGATTGCCCCTTCAAAGAAACGGGATTTGTATGGTACAAAGGAGTTTATATGCCCAATTTTTGTGATCTTTGTAATAAGATAGGTCACGTGGGTGAATTATGCCCTTTTGTCTCTGGCTCTGATCTTGATTATGATCCTCCGGGACCGGAGATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.12

Weight (kDa)

4.48

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 82
AcvI CACGTG 1 cut(s) 310
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 2 cut(s) 122, 235
AleI CACNNNNGTG 1 cut(s) 312
Alw26I GTCTC 3 cut(s) 93, 138, 337
AlwI GGATC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 2 cut(s) 47, 363
AsuHPI GGTGA 1 cut(s) 326
AvaII GGWCC 1 cut(s) 365
BbrPI CACGTG 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 12
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 2 cut(s) 47, 363
BcoDI GTCTC 3 cut(s) 93, 138, 337
Bme1390I CCNGG 2 cut(s) 47, 363
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 39, 366
BmrFI CCNGG 2 cut(s) 47, 363
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 96
BpuMI CCSGG 2 cut(s) 47, 363
BsaAI YACGTR 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 354
BseJI GATNNNNATC 1 cut(s) 354
BsiSI CCGG 3 cut(s) 47, 362, 368
BsmAI GTCTC 3 cut(s) 93, 138, 337
Bsp143I GATC 4 cut(s) 208, 286, 343, 355
BspACI CCGC 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 39, 366
BspPI GGATC 1 cut(s) 350
BssMI GATC 4 cut(s) 208, 286, 343, 355
BstAPI GCANNNNNTGC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 310
BstKTI GATC 4 cut(s) 211, 289, 346, 358
BstMAI GTCTC 3 cut(s) 93, 138, 337
BstMBI GATC 4 cut(s) 208, 286, 343, 355
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 45, 361
BstV2I GAAGAC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 187, 212
CviJI RGCY 3 cut(s) 19, 50, 339
CviKI_1 RGCY 3 cut(s) 19, 50, 339
CviQI GTAC 1 cut(s) 256
DpnI GATC 4 cut(s) 210, 288, 345, 357
DpnII GATC 4 cut(s) 208, 286, 343, 355
Eco47I GGWCC 1 cut(s) 365
Eco72I CACGTG 1 cut(s) 310
FaeI CATG 2 cut(s) 190, 215
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 2 cut(s) 186, 211
FauI CCCGC 1 cut(s) 188
FbaI TGATCA 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 117
HapII CCGG 3 cut(s) 47, 362, 368
Hin1II CATG 2 cut(s) 190, 215
HinfI GANTC 3 cut(s) 64, 109, 118
HpaII CCGG 3 cut(s) 47, 362, 368
HphI GGTGA 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 122, 347
HpyAV CCTTC 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 190, 215
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 208, 286, 343, 355
LpnPI CCDG 8 cut(s) 33, 36, 60, 74, 81, 119, 321, 375
LweI GCATC 1 cut(s) 162
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 305
MalI GATC 4 cut(s) 210, 288, 345, 357
MboI GATC 4 cut(s) 208, 286, 343, 355
MboII GAAGA 2 cut(s) 17, 211
MluCI AATT 3 cut(s) 82, 277, 317
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 2 cut(s) 28, 369
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 3 cut(s) 47, 362, 368
MspR9I CCNGG 2 cut(s) 47, 363
MwoI GCNNNNNNNGC 1 cut(s) 192
NciI CCSGG 2 cut(s) 47, 363
NdeII GATC 4 cut(s) 208, 286, 343, 355
NlaIII CATG 2 cut(s) 190, 215
NlaIV GGNNCC 2 cut(s) 39, 366
NmuCI GTSAC 1 cut(s) 305
OliI CACNNNNGTG 1 cut(s) 312
PfeI GAWTC 2 cut(s) 64, 118
PfoI TCCNGGA 1 cut(s) 361
PleI GAGTC 1 cut(s) 103
PmaCI CACGTG 1 cut(s) 310
PmlI CACGTG 1 cut(s) 310
PpsI GAGTC 1 cut(s) 103
Ppu21I YACGTR 1 cut(s) 310
PspCI CACGTG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 39, 366
PspPI GGNCC 1 cut(s) 365
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 312
Sau3AI GATC 4 cut(s) 208, 286, 343, 355
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 47, 363
SetI ASST 4 cut(s) 93, 138, 307, 312
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 3 cut(s) 82, 277, 317
SsiI CCGC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 45, 361
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 107, 152, 222
TasI AATT 3 cut(s) 82, 277, 317
TfiI GAWTC 2 cut(s) 64, 118
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.