FvH4_1g10043

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004520
Physical Location & Seq
Forward (+)
5459828 .. 5461304
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10043.t1

Sequence Viewer

Length: 942 bp
ATGGAGGAGAGAATCTTGATAGACGGCCTCATGACCCAGCCCCAATCTTCTTGCAATGTGGAACATGTATTGACTGAAGAAGAGAATTGTGTAATTGAAGAAGAGGAAGACATATATGAAGGGGAAGACGATCAATTGCAACAGAACCCTCAATATGAACATGGAAGTGAGAGTGACGACTCCGACTATGAATTGTATGATGAAGAAAATGATGTTGCTATAGAGGACGATCATTTATTTGATGATACTTCTGTGTTAACTCCATTATGGAGACCAAATGTTAAAGATGATGATACTTTTTCACTAAACCGTTCAGAAGAGAACATTGTGTTGGAAGAGGAATATCCCATGGAATTAGGTTCCCTATTACCATTGAATTTCATGCAAGATAACATTGCACAAGAGAGAGAATATGATTCTGATGATTTGAACAGTCCAGTGAATTCAGATGATGAAGAACAAGGAATGACTAAATATCCTGAGTTCAACGCTGCCACAGATATGGAGAACCCTGTATTTGTGATTGGAATGTTGTTTGCTACAAAGAATGATGTGAAGGAAGCAATAAAGAAGTATTCAATCAAAGGAGGTTATGAGACAACTATAAAAAATAATGATAGGATCCGGATTATAGCAGAGTGTATCCCAGGTTGTCCTTGGAAAATACGTGCATCTCCTAACGATGAAGGTACATGGCAAATCAAATCTCTGTTAAATGTGCATAATTGCAGCAGGCAATATAAAAATAAGCATGTGACCTATAAGTATATTGCTAAGAAGTGGTTGGATCGGTTTAGAGATGACTCTAAGTTATCCTTAAAAACGTTGAAGTCGACTGTTAGGAGAGAAATTGAAGTGGATGTATCTCATGGTCAGTGTAGTAGAGGAAGACAAGAAGCCATTAGAATGATTGAAGGAAGCTATAAAGAGCAGTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

314

Amino Acids

36.4

Weight (kDa)

4.42

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 174 - 227 8.3e-10 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 833
AccIII TCCGGA 1 cut(s) 624
AclI AACGTT 1 cut(s) 824
AclWI GGATC 3 cut(s) 616, 629, 795
AcsI RAATTY 2 cut(s) 376, 442
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 1 cut(s) 691
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 8 cut(s) 98, 376, 430, 487, 579, 829, 854, 914
AjnI CCWGG 1 cut(s) 646
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 1 cut(s) 921
AluI AGCT 1 cut(s) 921
Alw26I GTCTC 2 cut(s) 265, 590
AlwI GGATC 3 cut(s) 616, 629, 795
Aor13HI TCCGGA 1 cut(s) 624
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 491, 729
ApoI RAATTY 2 cut(s) 376, 442
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BamHI GGATCC 1 cut(s) 621
BbsI GAAGAC 3 cut(s) 114, 132, 895
BbvI GCAGC 2 cut(s) 478, 741
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 648
BciVI GTATCC 1 cut(s) 653
BcoDI GTCTC 2 cut(s) 265, 590
BfmI CTRYAG 1 cut(s) 219
BfuI GTATCC 1 cut(s) 653
BisI GCNGC 2 cut(s) 492, 730
BlsI GCNGC 2 cut(s) 493, 731
Bme1390I CCNGG 1 cut(s) 648
BmiI GGNNCC 2 cut(s) 361, 623
BmrFI CCNGG 1 cut(s) 648
BmsI GCATC 1 cut(s) 680
BpiI GAAGAC 3 cut(s) 114, 132, 895
BsaAI YACGTR 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 348, 646, 656
BsaWI WCCGGW 1 cut(s) 624
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 2 cut(s) 61, 393
BseAI TCCGGA 1 cut(s) 624
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 348, 646, 656
BseGI GGATG 1 cut(s) 865
BseMI GCAATG 2 cut(s) 61, 393
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 478, 741
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 625
BsmAI GTCTC 2 cut(s) 265, 590
BsnI GGCC 1 cut(s) 27
Bso31I GGTCTC 1 cut(s) 265
Bsp13I TCCGGA 1 cut(s) 624
Bsp143I GATC 4 cut(s) 130, 229, 621, 787
Bsp19I CCATGG 1 cut(s) 348
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 472
BspEI TCCGGA 1 cut(s) 624
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 361, 623
BspPI GGATC 3 cut(s) 616, 629, 795
BspTNI GGTCTC 1 cut(s) 265
BsrDI GCAATG 2 cut(s) 61, 393
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 3 cut(s) 348, 646, 656
BssMI GATC 4 cut(s) 130, 229, 621, 787
BssT1I CCWWGG 2 cut(s) 348, 656
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 3 cut(s) 311, 434, 838
Bst6I CTCTTC 4 cut(s) 75, 96, 312, 330
BstBAI YACGTR 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 734
BstDEI CTNAG 3 cut(s) 480, 774, 807
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 865
BstKTI GATC 4 cut(s) 133, 232, 624, 790
BstMAI GTCTC 2 cut(s) 265, 590
BstMBI GATC 4 cut(s) 130, 229, 621, 787
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 2 cut(s) 68, 755
BstSCI CCNGG 1 cut(s) 646
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 478, 741
BstV2I GAAGAC 3 cut(s) 114, 132, 895
BstX2I RGATCY 1 cut(s) 621
BstXI CCANNNNNNTGG 1 cut(s) 502
BstYI RGATCY 1 cut(s) 621
BsuI GTATCC 1 cut(s) 653
BsuRI GGCC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 1 cut(s) 865
BtsIMutI CAGTG 2 cut(s) 444, 881
Cac8I GCNNGC 1 cut(s) 734
CciI TCATGA 1 cut(s) 30
Csp6I GTAC 1 cut(s) 690
CviAII CATG 8 cut(s) 31, 65, 161, 349, 382, 693, 752, 869
CviJI RGCY 4 cut(s) 27, 40, 899, 921
CviKI_1 RGCY 4 cut(s) 27, 40, 899, 921
CviQI GTAC 1 cut(s) 690
DdeI CTNAG 3 cut(s) 480, 774, 807
DpnI GATC 4 cut(s) 132, 231, 623, 789
DpnII GATC 4 cut(s) 130, 229, 621, 787
Eam1104I CTCTTC 4 cut(s) 75, 96, 312, 330
EarI CTCTTC 4 cut(s) 75, 96, 312, 330
Eco130I CCWWGG 2 cut(s) 348, 656
Eco31I GGTCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 646
EcoT14I CCWWGG 2 cut(s) 348, 656
ErhI CCWWGG 2 cut(s) 348, 656
FaeI CATG 8 cut(s) 34, 68, 164, 352, 385, 696, 755, 872
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FatI CATG 8 cut(s) 30, 64, 160, 348, 381, 692, 751, 868
FblI GTMKAC 1 cut(s) 833
Fnu4HI GCNGC 2 cut(s) 492, 730
FokI GGATG 1 cut(s) 872
Fsp4HI GCNGC 2 cut(s) 492, 730
GluI GCNGC 2 cut(s) 492, 730
GsaI CCCAGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 27
HapII CCGG 1 cut(s) 625
Hin1II CATG 8 cut(s) 34, 68, 164, 352, 385, 696, 755, 872
HincII GTYRAC 2 cut(s) 258, 834
HindII GTYRAC 2 cut(s) 258, 834
HinfI GANTC 4 cut(s) 12, 179, 416, 803
HpaI GTTAAC 1 cut(s) 258
HpaII CCGG 1 cut(s) 625
Hpy166II GTNNAC 2 cut(s) 258, 834
Hpy188I TCNGA 4 cut(s) 184, 316, 421, 448
Hpy188III TCNNGA 4 cut(s) 16, 31, 479, 625
Hpy8I GTNNAC 2 cut(s) 258, 834
HpyAV CCTTC 4 cut(s) 113, 550, 680, 908
HpyCH4III ACNGT 3 cut(s) 311, 434, 838
HpyCH4IV ACGT 2 cut(s) 667, 824
HpyCH4V TGCA 7 cut(s) 54, 139, 385, 398, 671, 721, 729
HpyF3I CTNAG 3 cut(s) 480, 774, 807
HpySE526I ACGT 2 cut(s) 667, 824
Hsp92II CATG 8 cut(s) 34, 68, 164, 352, 385, 696, 755, 872
Kpn2I TCCGGA 1 cut(s) 624
KspAI GTTAAC 1 cut(s) 258
Kzo9I GATC 4 cut(s) 130, 229, 621, 787
LpnPI CCDG 8 cut(s) 50, 450, 492, 525, 633, 638, 660, 718
Lsp1109I GCAGC 2 cut(s) 478, 741
LweI GCATC 1 cut(s) 680
MaeII ACGT 2 cut(s) 667, 824
MaeIII GTNAC 2 cut(s) 173, 754
MalI GATC 4 cut(s) 132, 231, 623, 789
MboI GATC 4 cut(s) 130, 229, 621, 787
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 621
MluCI AATT 9 cut(s) 85, 93, 134, 191, 353, 376, 442, 724, 849
MlyI GAGTC 2 cut(s) 173, 797
MmeI TCCRAC 3 cut(s) 207, 312, 765
MnlI CCTC 7 cut(s) 38, 97, 159, 217, 331, 581, 878
MroI TCCGGA 1 cut(s) 624
MseI TTAA 4 cut(s) 257, 282, 713, 818
MslI CAYNNNNRTG 3 cut(s) 165, 500, 905
MspI CCGG 1 cut(s) 625
MspR9I CCNGG 1 cut(s) 648
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 648
NcoI CCATGG 1 cut(s) 348
NdeII GATC 4 cut(s) 130, 229, 621, 787
NlaIII CATG 8 cut(s) 34, 68, 164, 352, 385, 696, 755, 872
NlaIV GGNNCC 2 cut(s) 361, 623
NmuCI GTSAC 2 cut(s) 173, 754
NspI RCATGY 2 cut(s) 68, 755
PagI TCATGA 1 cut(s) 30
PciI ACATGT 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 830
PfeI GAWTC 2 cut(s) 12, 416
PkrI GCNGC 2 cut(s) 493, 731
PleI GAGTC 2 cut(s) 173, 797
PpsI GAGTC 2 cut(s) 173, 797
Ppu21I YACGTR 1 cut(s) 668
PscI ACATGT 1 cut(s) 64
Psp1406I AACGTT 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 2 cut(s) 361, 623
PsuI RGATCY 1 cut(s) 621
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
RseI CAYNNNNRTG 3 cut(s) 165, 500, 905
SalI GTCGAC 1 cut(s) 832
SaqAI TTAA 4 cut(s) 257, 282, 713, 818
SatI GCNGC 2 cut(s) 492, 730
Sau3AI GATC 4 cut(s) 130, 229, 621, 787
SchI GAGTC 2 cut(s) 173, 797
ScrFI CCNGG 1 cut(s) 648
SetI ASST 8 cut(s) 361, 592, 652, 670, 691, 761, 827, 923
SfaNI GCATC 1 cut(s) 680
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 3 cut(s) 165, 500, 905
Sse9I AATT 9 cut(s) 85, 93, 134, 191, 353, 376, 442, 724, 849
StyD4I CCNGG 1 cut(s) 646
StyI CCWWGG 2 cut(s) 348, 656
TaaI ACNGT 3 cut(s) 311, 434, 838
TaiI ACGT 2 cut(s) 670, 827
TaqI TCGA 1 cut(s) 833
TasI AATT 9 cut(s) 85, 93, 134, 191, 353, 376, 442, 724, 849
TfiI GAWTC 2 cut(s) 12, 416
Tru1I TTAA 4 cut(s) 257, 282, 713, 818
Tru9I TTAA 4 cut(s) 257, 282, 713, 818
TscAI CASTG 2 cut(s) 444, 881
TseFI GTSAC 2 cut(s) 173, 754
TseI GCWGC 2 cut(s) 491, 729
Tsp45I GTSAC 2 cut(s) 173, 754
TspDTI ATGAA 7 cut(s) 132, 171, 204, 216, 370, 468, 699
TspRI CASTG 2 cut(s) 444, 881
XapI RAATTY 2 cut(s) 376, 442
XceI RCATGY 2 cut(s) 68, 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 654
XmiI GTMKAC 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.