U3 snoRNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g10043 FvH4_3g28221 FvH4_3g44891 FvH4_5g34872 FvH4_5g34873 |
| prunus_persica | Prupe.4G046500_v2.0.a1 |
| pyrus_communis | pycom16g17290 |
| rosa_laevigata | RLG00000000609 RLG00000012674 RLG00000030721 |
| rosa_multiflora | Rmu_sc0021420.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00101980 Rroxscaffold_7G00183680 |
| rosa_rugosa | Rorug02G0380600 Rorug02G0506500 Rorug07G0288400 Rorug07G0288500 |
| rosa_samantha | Rh2AG419700 Rh2BG441300 Rh2CG406900 Rh2CG407000 Rh2DG451400 Rh5AG234600 Rh5AG414900 Rh7AG309500 Rh7BG415700 Rh7BG415800 Rh7BG415900 Rh7CG328700 Rh7CG513300 |
| rosa_wichuraiana | Rw2G035330 Rw7G026260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 4 |
| AgsI | TTSAA | 2 cut(s) | 65, 328 |
| AluBI | AGCT | 1 cut(s) | 114 |
| AluI | AGCT | 1 cut(s) | 114 |
| Alw26I | GTCTC | 1 cut(s) | 301 |
| AsuHPI | GGTGA | 1 cut(s) | 349 |
| BclI | TGATCA | 3 cut(s) | 130, 157, 229 |
| BcoDI | GTCTC | 1 cut(s) | 301 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| BsaWI | WCCGGW | 1 cut(s) | 334 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 101, 131 |
| BseGI | GGATG | 2 cut(s) | 232, 355 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseRI | GAGGAG | 1 cut(s) | 122 |
| BsiSI | CCGG | 1 cut(s) | 335 |
| BsmAI | GTCTC | 1 cut(s) | 301 |
| BsmI | GAATGC | 1 cut(s) | 346 |
| Bsp143I | GATC | 3 cut(s) | 130, 157, 229 |
| BspACI | CCGC | 1 cut(s) | 4 |
| BspCNI | CTCAG | 1 cut(s) | 194 |
| BssMI | GATC | 3 cut(s) | 130, 157, 229 |
| Bst4CI | ACNGT | 2 cut(s) | 250, 332 |
| Bst6I | CTCTTC | 3 cut(s) | 63, 81, 99 |
| BstDEI | CTNAG | 1 cut(s) | 181 |
| BstF5I | GGATG | 2 cut(s) | 232, 355 |
| BstKTI | GATC | 3 cut(s) | 133, 160, 232 |
| BstMAI | GTCTC | 1 cut(s) | 301 |
| BstMBI | GATC | 3 cut(s) | 130, 157, 229 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 28, 145 |
| BtsCI | GGATG | 2 cut(s) | 232, 355 |
| CviAII | CATG | 4 cut(s) | 28, 32, 161, 280 |
| CviJI | RGCY | 3 cut(s) | 114, 148, 368 |
| CviKI_1 | RGCY | 3 cut(s) | 114, 148, 368 |
| DdeI | CTNAG | 1 cut(s) | 181 |
| DpnI | GATC | 3 cut(s) | 132, 159, 231 |
| DpnII | GATC | 3 cut(s) | 130, 157, 229 |
| Eam1104I | CTCTTC | 3 cut(s) | 63, 81, 99 |
| EarI | CTCTTC | 3 cut(s) | 63, 81, 99 |
| EcoT22I | ATGCAT | 1 cut(s) | 33 |
| FaeI | CATG | 4 cut(s) | 31, 35, 164, 283 |
| FatI | CATG | 4 cut(s) | 27, 31, 160, 279 |
| FbaI | TGATCA | 3 cut(s) | 130, 157, 229 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| FokI | GGATG | 2 cut(s) | 239, 362 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 335 |
| Hin1II | CATG | 4 cut(s) | 31, 35, 164, 283 |
| HinfI | GANTC | 1 cut(s) | 179 |
| HpaII | CCGG | 1 cut(s) | 335 |
| HphI | GGTGA | 1 cut(s) | 349 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 301, 319 |
| HpyCH4III | ACNGT | 2 cut(s) | 250, 332 |
| HpyCH4V | TGCA | 4 cut(s) | 31, 139, 283, 344 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 28, 145 |
| HpyF3I | CTNAG | 1 cut(s) | 181 |
| Hsp92II | CATG | 4 cut(s) | 31, 35, 164, 283 |
| Ksp22I | TGATCA | 3 cut(s) | 130, 157, 229 |
| Kzo9I | GATC | 3 cut(s) | 130, 157, 229 |
| LpnPI | CCDG | 1 cut(s) | 348 |
| MalI | GATC | 3 cut(s) | 132, 159, 231 |
| MboI | GATC | 3 cut(s) | 130, 157, 229 |
| MluCI | AATT | 3 cut(s) | 73, 91, 313 |
| MlyI | GAGTC | 1 cut(s) | 173 |
| MnlI | CCTC | 4 cut(s) | 100, 159, 217, 340 |
| Mph1103I | ATGCAT | 1 cut(s) | 33 |
| MseI | TTAA | 1 cut(s) | 38 |
| MslI | CAYNNNNRTG | 1 cut(s) | 165 |
| MspI | CCGG | 1 cut(s) | 335 |
| Mva1269I | GAATGC | 1 cut(s) | 346 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 28, 145 |
| NdeII | GATC | 3 cut(s) | 130, 157, 229 |
| NlaIII | CATG | 4 cut(s) | 31, 35, 164, 283 |
| NsiI | ATGCAT | 1 cut(s) | 33 |
| PctI | GAATGC | 1 cut(s) | 346 |
| PflFI | GACNNNGTC | 1 cut(s) | 293 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| PleI | GAGTC | 1 cut(s) | 173 |
| PpsI | GAGTC | 1 cut(s) | 173 |
| PsyI | GACNNNGTC | 1 cut(s) | 293 |
| RseI | CAYNNNNRTG | 1 cut(s) | 165 |
| SaqAI | TTAA | 1 cut(s) | 38 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 3 cut(s) | 130, 157, 229 |
| SchI | GAGTC | 1 cut(s) | 173 |
| SetI | ASST | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 165 |
| Sse9I | AATT | 3 cut(s) | 73, 91, 313 |
| SsiI | CCGC | 1 cut(s) | 4 |
| TaaI | ACNGT | 2 cut(s) | 250, 332 |
| TasI | AATT | 3 cut(s) | 73, 91, 313 |
| TauI | GCSGC | 1 cut(s) | 7 |
| Tru1I | TTAA | 1 cut(s) | 38 |
| Tru9I | TTAA | 1 cut(s) | 38 |
| TspDTI | ATGAA | 4 cut(s) | 57, 216, 268, 369 |
| Tth111I | GACNNNGTC | 1 cut(s) | 293 |
| Zsp2I | ATGCAT | 1 cut(s) | 33 |