Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004520

Physical Location & Seq

Genomic Coordinates Forward (+)

25527884 .. 25528940

Gene Structure 1057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34873.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCATGCTGTTGCGTGTATTCATCACAATAGGGAGAAACCAGAGGCATATGTAGATAGATATTACCACAAGCAGACATACTTGAAGGCTTATGAACCTATAGTTCATCCAATTAAAGGGTCTGACATGTGGCCTAAGTGTAATCAAGAGCCACTTTTACCCCCATTAGTGAAAAAGCAACCAGGCAGGCCAAGGAAGGCTAGGAGAAAGGACCCAGAAATGGAGAAAGATCCTAACAATCCTATGCAGGTTGTGAGTAGAAAGGGAAAGACCACAACATGTACCAAGTGTTGGGGAAAAGGTCACAACAGAAGAAGTTGTAAAAATCAGCCTCGAGATGCCCCTCCAAATGTGTATGTTGATAAAAGATATTCTCATCCAAGGCCAGCAAGTGTTAGTGAAAGAAATGGTCAAGGAAGTGGTGGAGTATCAGAACAAAGTTCAAGACAAGGCAACAAGAAAAGGAAGACTACAAGTGCTAGCCCAAATCCATGCCCGAATATACAACCAACTGAAACTTCAAATATGCCTAGTGCAAACACCAATTCACGGCAAGGGCTGTATTGTAATCCACATGAGATGAGCTATGTTCAAGTTCCACATCAACTTGCCATTACAAGAGTGTCAGGAGGTGGCACATTCACAACAATTCCAAGGCACAATAACTCTTCCAATACAACTACCTCAACTTCTAGAGTAAACATGCCTCAACAGAAGGTTGGAACTTCTACTCCTAAGTTCGGCACATCCTTAAATACAACACAAAAGAAATCTTCCAAGACGACTACGTCAACTTTAAATACCAGAAAAGGTTCTGCACCCATATGGAGACCTCCTGGAATGACTCCTCGACAGAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

288

Amino Acids

32.08

Weight (kDa)

10.33

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10043 FvH4_3g28221 FvH4_3g44891 FvH4_5g34872 FvH4_5g34873
prunus_persica	Prupe.4G046500_v2.0.a1
pyrus_communis	pycom16g17290
rosa_laevigata	RLG00000000609 RLG00000012674 RLG00000030721
rosa_multiflora	Rmu_sc0021420.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101980 Rroxscaffold_7G00183680
rosa_rugosa	Rorug02G0380600 Rorug02G0506500 Rorug07G0288400 Rorug07G0288500
rosa_samantha	Rh2AG419700 Rh2BG441300 Rh2CG406900 Rh2CG407000 Rh2DG451400 Rh5AG234600 Rh5AG414900 Rh7AG309500 Rh7BG415700 Rh7BG415800 Rh7BG415900 Rh7CG328700 Rh7CG513300
rosa_wichuraiana	Rw2G035330 Rw7G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	787
Acc36I	ACCTGC	1 cut(s)	238
AccB7I	CCANNNNNTGG	1 cut(s)	291
AclWI	GGATC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	5 cut(s)	116, 220, 291, 549, 740
AflIII	ACRYGT	2 cut(s)	126, 278
AgsI	TTSAA	4 cut(s)	85, 444, 522, 593
AjnI	CCWGG	2 cut(s)	181, 835
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AloI	GAACNNNNNNTCC	2 cut(s)	715, 747
AluBI	AGCT	1 cut(s)	585
AluI	AGCT	1 cut(s)	585
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	3 cut(s)	131, 188, 383
Asp700I	GAANNNNTTC	1 cut(s)	811
AspS9I	GGNCC	1 cut(s)	211
AsuNHI	GCTAGC	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	2 cut(s)	183, 837
BcoDI	GTCTC	1 cut(s)	823
BfaI	CTAG	4 cut(s)	201, 480, 531, 693
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	183, 837
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	183, 837
BmsI	GCATC	1 cut(s)	328
BmtI	GCTAGC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	823
BsaJI	CCNNGG	3 cut(s)	191, 380, 653
BsaXI	ACNNNNNCTCC	2 cut(s)	715, 745
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 220, 291, 549, 740
BseBI	CCWGG	2 cut(s)	183, 837
BseDI	CCNNGG	3 cut(s)	191, 380, 653
BseGI	GGATG	3 cut(s)	106, 376, 746
BseLI	CCNNNNNNNGG	5 cut(s)	116, 220, 291, 549, 740
BseRI	GAGGAG	1 cut(s)	837
BsgI	GTGCAG	1 cut(s)	801
BshFI	GGCC	3 cut(s)	133, 190, 385
BsiHKCI	CYCGRG	1 cut(s)	333
BslI	CCNNNNNNNGG	5 cut(s)	116, 220, 291, 549, 740
BsmAI	GTCTC	1 cut(s)	823
BsnI	GGCC	3 cut(s)	133, 190, 385
Bso31I	GGTCTC	1 cut(s)	823
BsoBI	CYCGRG	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	3 cut(s)	133, 190, 385
BspLI	GGNNCC	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	238
BspOI	GCTAGC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	823
BssECI	CCNNGG	3 cut(s)	191, 380, 653
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	3 cut(s)	191, 380, 653
Bst2UI	CCWGG	2 cut(s)	183, 837
Bst6I	CTCTTC	1 cut(s)	673
BstC8I	GCNNGC	4 cut(s)	6, 188, 387, 481
BstDEI	CTNAG	2 cut(s)	135, 735
BstF5I	GGATG	3 cut(s)	106, 376, 746
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	1 cut(s)	229
BstNI	CCWGG	2 cut(s)	183, 837
BstNSI	RCATGY	4 cut(s)	8, 130, 282, 706
BstSCI	CCNGG	2 cut(s)	181, 835
BstSFI	CTRYAG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	133, 190, 385
BtsCI	GGATG	3 cut(s)	106, 376, 746
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	4 cut(s)	6, 188, 387, 481
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	6 cut(s)	5, 127, 279, 492, 575, 703
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	2 cut(s)	135, 735
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DraI	TTTAAA	1 cut(s)	798
DrdI	GACNNNNNNGTC	1 cut(s)	787
DseDI	GACNNNNNNGTC	1 cut(s)	787
Eam1104I	CTCTTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	673
Eco130I	CCWWGG	3 cut(s)	191, 380, 653
Eco31I	GGTCTC	1 cut(s)	823
Eco47I	GGWCC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	181, 835
EcoT14I	CCWWGG	3 cut(s)	191, 380, 653
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	191, 380, 653
FaeI	CATG	6 cut(s)	8, 130, 282, 495, 578, 706
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	6 cut(s)	4, 126, 278, 491, 574, 702
FauNDI	CATATG	2 cut(s)	49, 824
FokI	GGATG	3 cut(s)	93, 363, 733
FspBI	CTAG	4 cut(s)	201, 480, 531, 693
HaeIII	GGCC	3 cut(s)	133, 190, 385
Hin1II	CATG	6 cut(s)	8, 130, 282, 495, 578, 706
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HinfI	GANTC	1 cut(s)	844
Hpy166II	GTNNAC	2 cut(s)	700, 792
Hpy188I	TCNGA	2 cut(s)	124, 433
Hpy188III	TCNNGA	5 cut(s)	146, 335, 444, 627, 693
Hpy8I	GTNNAC	2 cut(s)	700, 792
HpyAV	CCTTC	3 cut(s)	79, 190, 709
HpyCH4IV	ACGT	1 cut(s)	788
HpyCH4V	TGCA	4 cut(s)	4, 247, 536, 818
HpyF3I	CTNAG	2 cut(s)	135, 735
HpySE526I	ACGT	1 cut(s)	788
Hsp92II	CATG	6 cut(s)	8, 130, 282, 495, 578, 706
Kzo9I	GATC	1 cut(s)	229
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	4 cut(s)	201, 480, 531, 693
MaeII	ACGT	1 cut(s)	788
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	4 cut(s)	324, 478, 660, 765
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	4 cut(s)	111, 544, 648, 859
MlyI	GAGTC	1 cut(s)	838
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	8 cut(s)	37, 342, 354, 623, 694, 717, 843, 858
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	811
MseI	TTAA	3 cut(s)	114, 752, 797
MslI	CAYNNNNRTG	1 cut(s)	823
MspR9I	CCNGG	2 cut(s)	183, 837
MvaI	CCWGG	2 cut(s)	183, 837
NdeI	CATATG	2 cut(s)	49, 824
NdeII	GATC	1 cut(s)	229
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	6 cut(s)	8, 130, 282, 495, 578, 706
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	302
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	4 cut(s)	8, 130, 282, 706
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	333
PciI	ACATGT	2 cut(s)	126, 278
PdmI	GAANNNNTTC	1 cut(s)	811
PflFI	GACNNNGTC	1 cut(s)	787
PflMI	CCANNNNNTGG	1 cut(s)	291
PfoI	TCCNGGA	1 cut(s)	835
PleI	GAGTC	1 cut(s)	838
PpsI	GAGTC	1 cut(s)	838
PpuMI	RGGWCCY	1 cut(s)	211
PscI	ACATGT	2 cut(s)	126, 278
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	181, 835
PspGI	CCWGG	2 cut(s)	181, 835
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	787
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	823
SaqAI	TTAA	3 cut(s)	114, 752, 797
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	838
ScrFI	CCNGG	2 cut(s)	183, 837
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	211
SlaI	CTCGAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	823
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	4 cut(s)	111, 544, 648, 859
SspMI	CTAG	4 cut(s)	201, 480, 531, 693
StyD4I	CCNGG	2 cut(s)	181, 835
StyI	CCWWGG	3 cut(s)	191, 380, 653
TaiI	ACGT	1 cut(s)	791
TaqI	TCGA	2 cut(s)	334, 850
TasI	AATT	4 cut(s)	111, 544, 648, 859
Tru1I	TTAA	3 cut(s)	114, 752, 797
Tru9I	TTAA	3 cut(s)	114, 752, 797
TseFI	GTSAC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	11, 95, 108
Tth111I	GACNNNGTC	1 cut(s)	787
Van91I	CCANNNNNTGG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	692
XceI	RCATGY	4 cut(s)	8, 130, 282, 706
XhoI	CTCGAG	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	811
XspI	CTAG	4 cut(s)	201, 480, 531, 693
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.