Rh2AG419700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004520
Physical Location & Seq
Reverse (-)
62391144 .. 62391992
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG419700.1

Sequence Viewer

Length: 561 bp
ATGCAGGTTGTCAGTAGAAAGGGAAAGACCACTATATGTACCAAGTGTTATGGAAAAGGACACAATAGGAGAAGTTGTAAAAATCAGCCTGTAAATGTTCCCCCAAATGTATATGTTGATAAAAGATATGCTTATCCAAGGCCAGCTAATGTTCTTGTAAAAAGAGGTCAAGAAAGTGGTGAAACTTCAGAACGAGGTTCGAGACAAGGAAAAAAGGTAAACATATTGGTAAGATTGATTTATTTAACGTCCAAGTTCCACGTCAACCTACCATTACAAGAGTGTCACGAGGTGGCACATTCGATCACCACAATTCCAAGACAGAAGAACTGTTCCAAGACAACTACCTCAACTTCTAGAGTAAACATTATGCCTCAACAGAAGGCTGGAACTTCAACTCCTAAGTTTGGTACATCCACAGCCCCAACACAAAAGAAATCTTCCAAGACTAGTACATCAACTTCTAAGTTTGGGTTGGCTTCAATGACATCCTCAAATGCTACACAAGGTTTTGCACCCATATGGAGACCACCTGGAATGACTCCTCAGCAGAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

186

Amino Acids

20.53

Weight (kDa)

10.57

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 292
AfaI GTAC 3 cut(s) 40, 412, 454
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 2 cut(s) 396, 483
AhlI ACTAGT 1 cut(s) 449
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 532
AloI GAACNNNNNNTCC 2 cut(s) 382, 414
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 2 cut(s) 196, 520
AoxI GGCC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 191, 298
BarI GAAGNNNNNNTAC 2 cut(s) 445, 477
BauI CACGAG 1 cut(s) 287
BbvCI CCTCAGC 1 cut(s) 546
BciT130I CCWGG 1 cut(s) 534
BcoDI GTCTC 2 cut(s) 196, 520
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 2 cut(s) 357, 450
Bme1390I CCNGG 1 cut(s) 534
BmgBI CACGTC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 534
Bpu10I CCTNAGC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 1 cut(s) 137
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 382, 412
Bsc4I CCNNNNNNNGG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 413, 488
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 560
BseRI GAGGAG 1 cut(s) 534
BshFI GGCC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 196, 520
BsnI GGCC 1 cut(s) 142
Bso31I GGTCTC 1 cut(s) 520
Bsp143I GATC 1 cut(s) 303
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 559
BspTNI GGTCTC 1 cut(s) 520
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 137
Bst2BI CACGAG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 3 cut(s) 402, 465, 546
BstF5I GGATG 2 cut(s) 413, 488
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 2 cut(s) 196, 520
BstMBI GATC 1 cut(s) 303
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 532
BsuRI GGCC 1 cut(s) 142
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 413, 488
Cac8I GCNNGC 1 cut(s) 144
Csp6I GTAC 3 cut(s) 39, 411, 453
CviJI RGCY 6 cut(s) 88, 142, 146, 386, 422, 479
CviKI_1 RGCY 6 cut(s) 88, 142, 146, 386, 422, 479
CviQI GTAC 3 cut(s) 39, 411, 453
DdeI CTNAG 3 cut(s) 402, 465, 546
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
DraIII CACNNNGTG 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FauNDI CATATG 1 cut(s) 521
FokI GGATG 2 cut(s) 400, 475
FspBI CTAG 2 cut(s) 357, 450
HaeIII GGCC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 1 cut(s) 541
HphI GGTGA 2 cut(s) 191, 298
Hpy166II GTNNAC 3 cut(s) 220, 265, 364
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 4 cut(s) 170, 201, 287, 357
Hpy8I GTNNAC 3 cut(s) 220, 265, 364
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 2 cut(s) 248, 261
HpyCH4V TGCA 2 cut(s) 4, 515
HpyF3I CTNAG 3 cut(s) 402, 465, 546
HpySE526I ACGT 2 cut(s) 248, 261
Kzo9I GATC 1 cut(s) 303
LpnPI CCDG 5 cut(s) 102, 156, 372, 519, 546
MaeI CTAG 2 cut(s) 357, 450
MaeII ACGT 2 cut(s) 248, 261
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 2 cut(s) 337, 432
MluCI AATT 1 cut(s) 312
MlyI GAGTC 1 cut(s) 535
MnlI CCTC 7 cut(s) 158, 188, 283, 358, 384, 502, 555
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 520
MspR9I CCNGG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 521
NdeII GATC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 284
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
RsaI GTAC 3 cut(s) 40, 412, 454
RsaNI GTAC 3 cut(s) 39, 411, 453
RseI CAYNNNNRTG 1 cut(s) 520
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 1 cut(s) 303
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 520
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 1 cut(s) 312
SspMI CTAG 2 cut(s) 357, 450
StyD4I CCNGG 1 cut(s) 532
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 2 cut(s) 251, 264
TaqI TCGA 2 cut(s) 200, 302
TasI AATT 1 cut(s) 312
TatI WGTACW 1 cut(s) 452
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
XbaI TCTAGA 1 cut(s) 356
XspI CTAG 2 cut(s) 357, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.