Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004520

Physical Location & Seq

Genomic Coordinates Reverse (-)

65458704 .. 65459865

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG451400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGAGAGACTATAAAAGGTAGGCCAAAGAAGGTTAGGCGGAAGGACCCAGAAATGGAGAAAGATCCTAACAATCCTATGCAGACAAAGAAGACTATAAGTGTTAGCCCTTCTTCATGCCAAAACATTGGATCAACTGCAAATTCAAATATGCCTAGTGCAAGTATAAACTCATGGCAAGGGTTGTATTGCAATCCGCATGAGGCTAGCTATGTTCAAGTTCCATGTCAACCTACCATTACAAGAGTGTCACGAGGTGGCACATTCACCACAATTCTAAGACACAGGAACTGTTCCAAGACAACTACCTCAACTTCTAGAGTAAACATTATGCCTCAACAGAAGGCTGGAACTTCAGCTCCTAAGTTTGGCACATCTACAGCTCCAACACAAAAGAAATCTTCCAAGACTAGTACATCAACTTCGAAGTTTGGGTTGACTTCAATGACATCCTCAAAAACTACACAAGGTTTTGCACCGCACCCATATGGAGACCACCTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.21

Weight (kDa)

10.11

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10043 FvH4_3g28221 FvH4_3g44891 FvH4_5g34872 FvH4_5g34873
prunus_persica	Prupe.4G046500_v2.0.a1
pyrus_communis	pycom16g17290
rosa_laevigata	RLG00000000609 RLG00000012674 RLG00000030721
rosa_multiflora	Rmu_sc0021420.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101980 Rroxscaffold_7G00183680
rosa_rugosa	Rorug02G0380600 Rorug02G0506500 Rorug07G0288400 Rorug07G0288500
rosa_samantha	Rh2AG419700 Rh2BG441300 Rh2CG406900 Rh2CG407000 Rh2DG451400 Rh5AG234600 Rh5AG414900 Rh7AG309500 Rh7BG415700 Rh7BG415800 Rh7BG415900 Rh7CG328700 Rh7CG513300
rosa_wichuraiana	Rw2G035330 Rw7G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	40, 197, 479
AclWI	GGATC	2 cut(s)	59, 139
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	55, 368
AgsI	TTSAA	3 cut(s)	147, 218, 444
AhlI	ACTAGT	1 cut(s)	410
AloI	GAACNNNNNNTCC	2 cut(s)	343, 375
AluBI	AGCT	3 cut(s)	210, 359, 383
AluI	AGCT	3 cut(s)	210, 359, 383
Alw26I	GTCTC	2 cut(s)	2, 486
AlwI	GGATC	2 cut(s)	59, 139
AlwNI	CAGNNNCTG	1 cut(s)	291
AoxI	GGCC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	425
AsuNHI	GCTAGC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	406, 438
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	2, 486
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	5 cut(s)	156, 207, 318, 411, 500
BfmI	CTRYAG	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	48
BmtI	GCTAGC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 368
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	2 cut(s)	55, 368
BshFI	GGCC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	55, 368
BsmAI	GTCTC	2 cut(s)	2, 486
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	486
Bsp119I	TTCGAA	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	64, 131
BspACI	CCGC	3 cut(s)	40, 197, 479
BspANI	GGCC	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	210
BspPI	GGATC	2 cut(s)	59, 139
BspT104I	TTCGAA	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	486
BssMI	GATC	2 cut(s)	64, 131
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	278, 363
BstF5I	GGATG	1 cut(s)	449
BstKTI	GATC	2 cut(s)	67, 134
BstMAI	GTCTC	2 cut(s)	2, 486
BstMBI	GATC	2 cut(s)	64, 131
BstSFI	CTRYAG	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	4 cut(s)	117, 174, 200, 225
CviJI	RGCY	7 cut(s)	25, 108, 206, 210, 347, 359, 383
CviKI_1	RGCY	7 cut(s)	25, 108, 206, 210, 347, 359, 383
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	278, 363
DpnI	GATC	2 cut(s)	66, 133
DpnII	GATC	2 cut(s)	64, 131
DraIII	CACNNNGTG	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	46
FaeI	CATG	4 cut(s)	120, 177, 203, 228
FatI	CATG	4 cut(s)	116, 173, 199, 224
FauNDI	CATATG	1 cut(s)	487
FokI	GGATG	1 cut(s)	436
FspBI	CTAG	5 cut(s)	156, 207, 318, 411, 500
HaeIII	GGCC	1 cut(s)	25
Hin1II	CATG	4 cut(s)	120, 177, 203, 228
HincII	GTYRAC	2 cut(s)	230, 438
HindII	GTYRAC	2 cut(s)	230, 438
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	230, 325, 438
Hpy188III	TCNNGA	2 cut(s)	252, 318
Hpy8I	GTNNAC	3 cut(s)	230, 325, 438
HpyAV	CCTTC	4 cut(s)	25, 37, 120, 337
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	5 cut(s)	82, 140, 161, 192, 476
HpyF3I	CTNAG	2 cut(s)	278, 363
Hsp92II	CATG	4 cut(s)	120, 177, 203, 228
Kzo9I	GATC	2 cut(s)	64, 131
LmnI	GCTCC	2 cut(s)	364, 388
LpnPI	CCDG	3 cut(s)	63, 271, 333
MaeI	CTAG	5 cut(s)	156, 207, 318, 411, 500
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	2 cut(s)	66, 133
MboI	GATC	2 cut(s)	64, 131
MboII	GAAGA	3 cut(s)	103, 105, 393
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	2 cut(s)	142, 273
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	5 cut(s)	196, 248, 319, 345, 463
MslI	CAYNNNNRTG	1 cut(s)	486
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	2 cut(s)	64, 131
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	4 cut(s)	120, 177, 203, 228
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	486
Sau3AI	GATC	2 cut(s)	64, 131
Sau96I	GGNCC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	425
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	486
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	2 cut(s)	142, 273
SsiI	CCGC	3 cut(s)	40, 197, 479
SspMI	CTAG	5 cut(s)	156, 207, 318, 411, 500
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	425
TasI	AATT	2 cut(s)	142, 273
TatI	WGTACW	1 cut(s)	413
TseFI	GTSAC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	317
XspI	CTAG	5 cut(s)	156, 207, 318, 411, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.