Rw7G026260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004520
Physical Location & Seq
Reverse (-)
33338675 .. 33341770
3096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026260.1

Sequence Viewer

Length: 1368 bp
ATGGAGTTTGGTTCCCTATTACCATTAAACTTTATGCAAGATGACATTGTTCCGGTGAATTCAGAGGATGACGAAGAAGGAATGGTTAAATATCCTGAGTTTAACGCTACCACATATATGGAGAACCCTATTTTAGTGATAGGGATGTTATTTGCTACAAAAAATGATGTGAAGGAAGCAATTAAGGAGTATTCAATCAAAGGGGGTTATGAGACAACTATAAAAAAGAATGACAAGACTAGGATGACTGCAAATTGTACGTGGCAAATCAATTATCTGTTAAATGTGCACAATTGCAACAGGCAATATAAAAAGAAGCATGTCACCTATAAGTATATTGCCAAAACGTGGTTGGATCGGTTTAGAGATGACCCTAAGTTGTCCTTAAAAACTTTGAAATCAACTATCAGGAGAGAAATTGCAGTGGATGTATCTCATGGTCAGTGTACTAGGGGAAGACAAGAAGCCATTAAAATAATTGAAGGAAGATATAAAGAGTACAGTATATTTGTGAGGGCTAATCCTCCATACTTTCAGAGGCTTTTTATGTGTCTTGAAGCTTGTAAGAACGGCTTCAAAAAAGGGTGCATGCCAATTATAGGAGTAGATGGATGTCATCTTAAAGGCGCGTTTGGAGGTATTGAGCAACTACTAGCTGTAGTTGGCATTGATGCTAATGACAATATGTATCCAATAGCCTATGCAGTGGTGGAGAGTGAAGATAAGGAAACATGGTGTTGGTTTCTCCAACTTCTAATTGAAGATCTTGGACCTGGTTTAGATGAGGCTTTCAAAATTGTGGTACCAATGGCAGATCATAGATGGTGTGTGAGACACTTGTACGGGAATTTCAAAAAACTTCACAAACATAAGGCTTTGAAAGACTTGTTGTGGAATGCTGCTAGGGCACCTAATAATGCTGAGTTTGAGACGAAAATGATGAAGTTGAAGAAAAGATGGGCTAGGTCTAGGTTTACAAGCAGGTTAAAGTGTTATATGCTTTTGAATAACCTATGTGAGACTTTCAACAGTTGGATTCTTACTGCTAGAGACCAGCCCATATTAACCATGTTGGAGATGATAAGGCGTAATTTAATGAGGAGATATCAAGTTCTTCTCCCCCCAAAAGAGATGGAAGCTACAAACGCATTCCCCGGGCTGAGTTTTGGTATAGAGAAGAGTCTTCTCAACCTCTCTCCGATTTTGAGGCCCTCGTCACTATTGGCCGTTGCTAATGAGGCTGGTGCTAATTTGATTCACATTAAGGTAGACCATGGATGCATGCTTCAATTGGATTTTTTAAATTTGTTATGTTACTTTATTTACTTGCCTCATGACATTATGTTATTTGTGGTTCTCTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

455

Amino Acids

52.66

Weight (kDa)

8.91

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 44 - 87 7.6e-07 MuDR family transposase
MULE PF10551 200 - 282 6.6e-10 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 972
Acc65I GGTACC 1 cut(s) 802
AccB1I GGYRCC 2 cut(s) 802, 907
AccB7I CCANNNNNTGG 1 cut(s) 348
AccI GTMKAC 1 cut(s) 1269
AccII CGCG 1 cut(s) 629
AclWI GGATC 1 cut(s) 363
AcoI YGGCCR 1 cut(s) 1224
AcsI RAATTY 3 cut(s) 58, 847, 1303
AfaI GTAC 5 cut(s) 259, 448, 500, 804, 842
AfiI CCNNNNNNNGG 2 cut(s) 348, 599
AjnI CCWGG 1 cut(s) 772
AluBI AGCT 3 cut(s) 560, 656, 1139
AluI AGCT 3 cut(s) 560, 656, 1139
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 5 cut(s) 206, 826, 923, 1013, 1044
Alw44I GTGCAC 1 cut(s) 287
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 1154
AoxI GGCC 2 cut(s) 1208, 1224
ApaLI GTGCAC 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 899
ApoI RAATTY 3 cut(s) 58, 847, 1303
Asp700I GAANNNNTTC 1 cut(s) 572
Asp718I GGTACC 1 cut(s) 802
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 2 cut(s) 770, 1209
AsuC2I CCSGG 2 cut(s) 1155, 1156
AsuHPI GGTGA 2 cut(s) 67, 316
AvaI CYCGRG 1 cut(s) 1154
AvaII GGWCC 1 cut(s) 770
BaeGI GKGCMC 2 cut(s) 291, 910
BanI GGYRCC 2 cut(s) 802, 907
BbsI GAAGAC 2 cut(s) 463, 1175
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 886
BccI CCATC 4 cut(s) 602, 816, 951, 1126
BceAI ACGGC 2 cut(s) 586, 1211
BciT130I CCWGG 1 cut(s) 774
BciVI GTATCC 1 cut(s) 699
BcnI CCSGG 2 cut(s) 1155, 1156
BcoDI GTCTC 5 cut(s) 206, 826, 923, 1013, 1044
BfaI CTAG 7 cut(s) 240, 450, 653, 903, 963, 969, 1047
BfmI CTRYAG 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 972
BfuI GTATCC 1 cut(s) 699
BglII AGATCT 1 cut(s) 763
BisI GCNGC 1 cut(s) 900
BlsI GCNGC 1 cut(s) 901
Bme1390I CCNGG 3 cut(s) 774, 1155, 1156
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 1 cut(s) 1154
BmgT120I GGNCC 2 cut(s) 770, 1209
BmiI GGNNCC 3 cut(s) 13, 804, 909
BmrFI CCNGG 3 cut(s) 774, 1155, 1156
BmsI GCATC 2 cut(s) 661, 1268
BpiI GAAGAC 2 cut(s) 463, 1175
BpuMI CCSGG 2 cut(s) 1155, 1156
BsaAI YACGTR 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 1044
BsaJI CCNNGG 3 cut(s) 1153, 1154, 1273
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 599
BseBI CCWGG 1 cut(s) 774
BseDI CCNNGG 3 cut(s) 1153, 1154, 1273
BseGI GGATG 6 cut(s) 73, 150, 249, 433, 617, 1283
BseLI CCNNNNNNNGG 2 cut(s) 348, 599
BseMII CTCAG 3 cut(s) 87, 912, 1151
BseRI GAGGAG 1 cut(s) 1114
BseSI GKGCMC 2 cut(s) 291, 910
BseXI GCAGC 1 cut(s) 886
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 2 cut(s) 1210, 1226
BshNI GGYRCC 2 cut(s) 802, 907
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 1154
BsiSI CCGG 2 cut(s) 53, 1155
BslI CCNNNNNNNGG 2 cut(s) 348, 599
BsmAI GTCTC 5 cut(s) 206, 826, 923, 1013, 1044
BsmBI CGTCTC 1 cut(s) 923
BsmI GAATGC 2 cut(s) 901, 1148
BsnI GGCC 2 cut(s) 1210, 1226
Bso31I GGTCTC 1 cut(s) 1044
BsoBI CYCGRG 1 cut(s) 1154
Bsp1286I GDGCHC 2 cut(s) 291, 910
Bsp143I GATC 3 cut(s) 355, 763, 814
Bsp19I CCATGG 1 cut(s) 1273
BspANI GGCC 2 cut(s) 1210, 1226
BspCNI CTCAG 3 cut(s) 88, 913, 1152
BspFNI CGCG 1 cut(s) 629
BspHI TCATGA 1 cut(s) 1333
BspLI GGNNCC 3 cut(s) 13, 804, 909
BspMI ACCTGC 1 cut(s) 972
BspPI GGATC 1 cut(s) 363
BspT107I GGYRCC 2 cut(s) 802, 907
BspTNI GGTCTC 1 cut(s) 1044
BssECI CCNNGG 3 cut(s) 1153, 1154, 1273
BssMI GATC 3 cut(s) 355, 763, 814
BssT1I CCWWGG 1 cut(s) 1273
Bst2UI CCWGG 1 cut(s) 774
Bst4CI ACNGT 2 cut(s) 503, 1031
Bst6I CTCTTC 1 cut(s) 1172
BstBAI YACGTR 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 590, 1283
BstDEI CTNAG 4 cut(s) 96, 375, 921, 1160
BstDSI CCRYGG 1 cut(s) 1273
BstF5I GGATG 6 cut(s) 73, 150, 249, 433, 617, 1283
BstFNI CGCG 1 cut(s) 629
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 3 cut(s) 358, 766, 817
BstMAI GTCTC 5 cut(s) 206, 826, 923, 1013, 1044
BstMBI GATC 3 cut(s) 355, 763, 814
BstMWI GCNNNNNNNGC 3 cut(s) 905, 1145, 1238
BstNI CCWGG 1 cut(s) 774
BstNSI RCATGY 3 cut(s) 323, 592, 1285
BstSCI CCNGG 3 cut(s) 772, 1153, 1154
BstSFI CTRYAG 1 cut(s) 657
BstSLI GKGCMC 2 cut(s) 291, 910
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 1 cut(s) 886
BstV2I GAAGAC 2 cut(s) 463, 1175
BstX2I RGATCY 1 cut(s) 763
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 1 cut(s) 763
BsuI GTATCC 1 cut(s) 699
BsuRI GGCC 2 cut(s) 1210, 1226
BtgI CCRYGG 1 cut(s) 1273
BtsCI GGATG 6 cut(s) 73, 150, 249, 433, 617, 1283
BtsI GCAGTG 2 cut(s) 429, 711
BtsIMutI CAGTG 3 cut(s) 429, 449, 711
BveI ACCTGC 1 cut(s) 972
Cac8I GCNNGC 2 cut(s) 590, 1283
CciI TCATGA 1 cut(s) 1333
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 2 cut(s) 770, 1209
Cfr9I CCCGGG 1 cut(s) 1154
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 5 cut(s) 258, 447, 499, 803, 841
CviAII CATG 8 cut(s) 320, 437, 589, 732, 1069, 1274, 1282, 1334
CviQI GTAC 5 cut(s) 258, 447, 499, 803, 841
DdeI CTNAG 4 cut(s) 96, 375, 921, 1160
DpnI GATC 3 cut(s) 357, 765, 816
DpnII GATC 3 cut(s) 355, 763, 814
DraI TTTAAA 1 cut(s) 1302
EaeI YGGCCR 1 cut(s) 1224
Eam1104I CTCTTC 1 cut(s) 1172
EarI CTCTTC 1 cut(s) 1172
Eco130I CCWWGG 1 cut(s) 1273
Eco31I GGTCTC 1 cut(s) 1044
Eco32I GATATC 1 cut(s) 1106
Eco47I GGWCC 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 1154
EcoO109I RGGNCCY 1 cut(s) 1209
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 772
EcoRV GATATC 1 cut(s) 1106
EcoT14I CCWWGG 1 cut(s) 1273
EcoT22I ATGCAT 1 cut(s) 1283
ErhI CCWWGG 1 cut(s) 1273
Esp3I CGTCTC 1 cut(s) 923
FaeI CATG 8 cut(s) 323, 440, 592, 735, 1072, 1277, 1285, 1337
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 557, 589
FatI CATG 8 cut(s) 319, 436, 588, 731, 1068, 1273, 1281, 1333
FblI GTMKAC 1 cut(s) 1269
Fnu4HI GCNGC 1 cut(s) 900
FokI GGATG 6 cut(s) 80, 157, 256, 440, 624, 1290
Fsp4HI GCNGC 1 cut(s) 900
FspBI CTAG 7 cut(s) 240, 450, 653, 903, 963, 969, 1047
GlaI GCGC 1 cut(s) 628
GluI GCNGC 1 cut(s) 900
HaeIII GGCC 2 cut(s) 1210, 1226
HapII CCGG 2 cut(s) 53, 1155
HhaI GCGC 1 cut(s) 629
Hin1II CATG 8 cut(s) 323, 440, 592, 735, 1072, 1277, 1285, 1337
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 3 cut(s) 1036, 1180, 1255
HpaII CCGG 2 cut(s) 53, 1155
HphI GGTGA 2 cut(s) 67, 316
Hpy166II GTNNAC 4 cut(s) 289, 447, 975, 1270
Hpy188I TCNGA 3 cut(s) 64, 537, 1200
Hpy188III TCNNGA 4 cut(s) 95, 409, 554, 1334
Hpy8I GTNNAC 4 cut(s) 289, 447, 975, 1270
HpyAV CCTTC 3 cut(s) 71, 166, 476
HpyCH4III ACNGT 2 cut(s) 503, 1031
HpyCH4IV ACGT 2 cut(s) 260, 347
HpyCH4V TGCA 8 cut(s) 37, 251, 289, 297, 422, 588, 704, 1281
HpyF10VI GCNNNNNNNGC 3 cut(s) 905, 1145, 1238
HpyF3I CTNAG 4 cut(s) 96, 375, 921, 1160
HpySE526I ACGT 2 cut(s) 260, 347
Hsp92II CATG 8 cut(s) 323, 440, 592, 735, 1072, 1277, 1285, 1337
HspAI GCGC 1 cut(s) 627
KpnI GGTACC 1 cut(s) 806
Kzo9I GATC 3 cut(s) 355, 763, 814
Lsp1109I GCAGC 1 cut(s) 886
LweI GCATC 2 cut(s) 661, 1268
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 7 cut(s) 240, 450, 653, 903, 963, 969, 1047
MaeII ACGT 2 cut(s) 260, 347
MaeIII GTNAC 3 cut(s) 322, 1215, 1313
MalI GATC 3 cut(s) 357, 765, 816
MboI GATC 3 cut(s) 355, 763, 814
MboII GAAGA 9 cut(s) 86, 468, 498, 731, 773, 961, 1106, 1175, 1189
MfeI CAATTG 2 cut(s) 292, 1289
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 2 cut(s) 291, 910
MlyI GAGTC 1 cut(s) 1189
MmeI TCCRAC 4 cut(s) 333, 772, 1013, 1053
Mph1103I ATGCAT 1 cut(s) 1283
MroXI GAANNNNTTC 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 116
MspI CCGG 2 cut(s) 53, 1155
MspR9I CCNGG 3 cut(s) 774, 1155, 1156
MunI CAATTG 2 cut(s) 292, 1289
Mva1269I GAATGC 2 cut(s) 901, 1148
MvaI CCWGG 1 cut(s) 774
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 3 cut(s) 905, 1145, 1238
NciI CCSGG 2 cut(s) 1155, 1156
NcoI CCATGG 1 cut(s) 1273
NdeII GATC 3 cut(s) 355, 763, 814
NlaIII CATG 8 cut(s) 323, 440, 592, 735, 1072, 1277, 1285, 1337
NlaIV GGNNCC 3 cut(s) 13, 804, 909
NmuCI GTSAC 2 cut(s) 322, 1215
NsiI ATGCAT 1 cut(s) 1283
NspI RCATGY 3 cut(s) 323, 592, 1285
PaeI GCATGC 2 cut(s) 592, 1285
PagI TCATGA 1 cut(s) 1333
PctI GAATGC 2 cut(s) 901, 1148
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 1036, 1255
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 1 cut(s) 901
PleI GAGTC 1 cut(s) 1188
PpsI GAGTC 1 cut(s) 1188
Ppu21I YACGTR 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 772
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 3 cut(s) 13, 804, 909
PspPI GGNCC 2 cut(s) 770, 1209
PsuI RGATCY 1 cut(s) 763
RsaI GTAC 5 cut(s) 259, 448, 500, 804, 842
RsaNI GTAC 5 cut(s) 258, 447, 499, 803, 841
RseI CAYNNNNRTG 1 cut(s) 116
SatI GCNGC 1 cut(s) 900
Sau3AI GATC 3 cut(s) 355, 763, 814
Sau96I GGNCC 2 cut(s) 770, 1209
SchI GAGTC 1 cut(s) 1189
ScrFI CCNGG 3 cut(s) 774, 1155, 1156
SduI GDGCHC 2 cut(s) 291, 910
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 2 cut(s) 661, 1268
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 1 cut(s) 770
SmaI CCCGGG 1 cut(s) 1156
SmiMI CAYNNNNRTG 1 cut(s) 116
SphI GCATGC 2 cut(s) 592, 1285
SspMI CTAG 7 cut(s) 240, 450, 653, 903, 963, 969, 1047
StyD4I CCNGG 3 cut(s) 772, 1153, 1154
StyI CCWWGG 1 cut(s) 1273
TaaI ACNGT 2 cut(s) 503, 1031
TaiI ACGT 2 cut(s) 263, 350
TatI WGTACW 2 cut(s) 446, 498
TfiI GAWTC 2 cut(s) 1036, 1255
TscAI CASTG 3 cut(s) 429, 449, 711
TseFI GTSAC 2 cut(s) 322, 1215
TseI GCWGC 1 cut(s) 899
Tsp45I GTSAC 2 cut(s) 322, 1215
TspDTI ATGAA 1 cut(s) 956
TspMI CCCGGG 1 cut(s) 1154
TspRI CASTG 3 cut(s) 429, 449, 711
Van91I CCANNNNNTGG 1 cut(s) 348
VneI GTGCAC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 3 cut(s) 58, 847, 1303
XceI RCATGY 3 cut(s) 323, 592, 1285
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmaI CCCGGG 1 cut(s) 1154
XmiI GTMKAC 1 cut(s) 1269
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 7 cut(s) 240, 450, 653, 903, 963, 969, 1047
Zsp2I ATGCAT 1 cut(s) 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.