Rh5AG234600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004520
Physical Location & Seq
Reverse (-)
28397670 .. 28400644
2975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG234600.1

Sequence Viewer

Length: 1059 bp
ATGTCAAAGTCTCAATTTTCTTGCGAAGTGGAACATGGATTGAATGAAGAAGAGAATTGTGTAATTGAAGAAGAGGAAGGCATGTATGATAATTTTGTGCAAAATAAAGGGGAAGATGATCAATTGCAACAGAACCCTCGATTTGAACATGGAAGTGAGAGTGATGACTCCGATTATGAATTGTATGATGAAGAAAATGATGTTGCCATAGAGGATGATCATTTATTTGATGATACTGCTGTACATGTGTTGACTCCATTAGGGAGACCAAATGTTGAAGATGATGATACTTTGTCACTAAACCTTTCACAAGAGAACACTGTGTTAGAGGATGAATATACCATGGAATCTGGTTCCCTGTTACCATTAAATTTCATGCAAGATAACATTGTCCAAGAGAGAGAATATGATTCAGATGATTTGAACAGTCCAGTGAATTCAGATGATGAAGAAGAAGGAATGATTAAATATCCTGAGTTTAATGCTGCCACAGATATGGAGAACCCCGTATTCGTGATCGGGATGCTGTTTGCCACAAAAAATGATGTGAAGGAAGCAATTAAGGAGTATTCAATCAAAGGGGGTTATGAGACAACTATAAAAAAGAATGACAAGACCCGGATGACTGCAAAGTGTATCCCAGGTTGTCCTTGGAAAATTCATGCATCTCCGAATGAAGAAGGTACATGGCAAATCAAATCTCTGGTAAATGTGCACAACTGCAATAGGCAATATAAAAAGAAGCCTGTTACCTATAAGTATATTGCTAAGAAGTGGTTGGATCGGTTTAGAGATGACCCTAAGTTATCCTTAAAAACTTTGAAATCGACTGTTAGGAGAGAAATTGAAGTGGATGTATCTCATGGTCAGTGTACTAGAGGAAGACAAGAAGCCATTAAAATGATTGAAGGAAGCTACAAAGAGCAGTATAGTAGGATCTGGGAGTATTGTGCAGAACTGAGGCAAACTAATAAGAATAATAGTTCAAGTTCCACATCAACCTACCATTACAAGAGCGTCAAGAGGTGGCACATTCACCAGAATTCCAAGGCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

352

Amino Acids

40.86

Weight (kDa)

4.8

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 172 - 227 1.1e-12 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 789, 944
AcsI RAATTY 4 cut(s) 370, 436, 657, 1042
AfaI GTAC 3 cut(s) 243, 685, 874
AflIII ACRYGT 1 cut(s) 244
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 1 cut(s) 915
AluI AGCT 1 cut(s) 915
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 3 cut(s) 15, 259, 584
Alw44I GTGCAC 1 cut(s) 713
AlwI GGATC 2 cut(s) 789, 944
ApaLI GTGCAC 1 cut(s) 713
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 4 cut(s) 370, 436, 657, 1042
AsuC2I CCSGG 1 cut(s) 619
AsuHPI GGTGA 1 cut(s) 1028
BaeGI GKGCMC 1 cut(s) 717
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BbsI GAAGAC 1 cut(s) 889
Bbv12I GWGCWC 1 cut(s) 717
BbvI GCAGC 1 cut(s) 472
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 1 cut(s) 647
BclI TGATCA 2 cut(s) 118, 217
BcnI CCSGG 1 cut(s) 619
BcoDI GTCTC 3 cut(s) 15, 259, 584
BfaI CTAG 1 cut(s) 876
BfuI GTATCC 1 cut(s) 647
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 2 cut(s) 619, 642
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 2 cut(s) 619, 642
BmsI GCATC 2 cut(s) 513, 674
BpiI GAAGAC 1 cut(s) 889
BpuMI CCSGG 1 cut(s) 619
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 4 cut(s) 342, 640, 650, 1047
Bse1I ACTGG 1 cut(s) 431
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 4 cut(s) 342, 640, 650, 1047
BseGI GGATG 5 cut(s) 220, 337, 528, 627, 859
BseMII CTCAG 2 cut(s) 465, 950
BseNI ACTGG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 717
BseXI GCAGC 1 cut(s) 472
BsgI GTGCAG 1 cut(s) 972
BsiHKAI GWGCWC 1 cut(s) 717
BsiSI CCGG 1 cut(s) 619
BsmAI GTCTC 3 cut(s) 15, 259, 584
Bso31I GGTCTC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 717
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 5 cut(s) 118, 217, 516, 781, 936
Bsp19I CCATGG 1 cut(s) 342
BspCNI CTCAG 2 cut(s) 466, 951
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 2 cut(s) 789, 944
BspTNI GGTCTC 1 cut(s) 259
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 4 cut(s) 342, 640, 650, 1047
BssMI GATC 5 cut(s) 118, 217, 516, 781, 936
BssT1I CCWWGG 3 cut(s) 342, 650, 1047
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 3 cut(s) 322, 428, 832
Bst6I CTCTTC 2 cut(s) 45, 66
BstAUI TGTACA 1 cut(s) 241
BstDEI CTNAG 4 cut(s) 474, 768, 801, 959
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 5 cut(s) 220, 337, 528, 627, 859
BstKTI GATC 5 cut(s) 121, 220, 519, 784, 939
BstMAI GTCTC 3 cut(s) 15, 259, 584
BstMBI GATC 5 cut(s) 118, 217, 516, 781, 936
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 2 cut(s) 85, 248
BstSCI CCNGG 2 cut(s) 617, 640
BstSLI GKGCMC 1 cut(s) 717
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 889
BstX2I RGATCY 1 cut(s) 936
BstXI CCANNNNNNTGG 1 cut(s) 496
BstYI RGATCY 1 cut(s) 936
BsuI GTATCC 1 cut(s) 647
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 5 cut(s) 220, 337, 528, 627, 859
BtsIMutI CAGTG 3 cut(s) 318, 438, 875
CseI GACGC 1 cut(s) 1006
Csp6I GTAC 3 cut(s) 242, 684, 873
CviAII CATG 9 cut(s) 35, 82, 149, 245, 343, 376, 662, 687, 863
CviJI RGCY 3 cut(s) 745, 893, 915
CviKI_1 RGCY 3 cut(s) 745, 893, 915
CviQI GTAC 3 cut(s) 242, 684, 873
DdeI CTNAG 4 cut(s) 474, 768, 801, 959
DpnI GATC 5 cut(s) 120, 219, 518, 783, 938
DpnII GATC 5 cut(s) 118, 217, 516, 781, 936
Eam1104I CTCTTC 2 cut(s) 45, 66
EarI CTCTTC 2 cut(s) 45, 66
Eco130I CCWWGG 3 cut(s) 342, 650, 1047
Eco31I GGTCTC 1 cut(s) 259
EcoRI GAATTC 2 cut(s) 436, 1042
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 3 cut(s) 342, 650, 1047
EcoT22I ATGCAT 1 cut(s) 667
ErhI CCWWGG 3 cut(s) 342, 650, 1047
FaeI CATG 9 cut(s) 38, 85, 152, 248, 346, 379, 665, 690, 866
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FatI CATG 9 cut(s) 34, 81, 148, 244, 342, 375, 661, 686, 862
FbaI TGATCA 2 cut(s) 118, 217
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 5 cut(s) 227, 344, 535, 634, 866
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 1 cut(s) 876
GluI GCNGC 1 cut(s) 486
HapII CCGG 1 cut(s) 619
HgaI GACGC 1 cut(s) 1006
Hin1II CATG 9 cut(s) 38, 85, 152, 248, 346, 379, 665, 690, 866
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 4 cut(s) 167, 253, 347, 410
HpaII CCGG 1 cut(s) 619
HphI GGTGA 1 cut(s) 1028
Hpy166II GTNNAC 3 cut(s) 252, 715, 873
Hpy188I TCNGA 4 cut(s) 172, 415, 442, 672
Hpy188III TCNNGA 4 cut(s) 473, 514, 520, 1021
Hpy8I GTNNAC 3 cut(s) 252, 715, 873
HpyAV CCTTC 5 cut(s) 71, 449, 544, 674, 902
HpyCH4III ACNGT 3 cut(s) 322, 428, 832
HpyCH4V TGCA 8 cut(s) 100, 127, 379, 629, 665, 715, 723, 953
HpyF3I CTNAG 4 cut(s) 474, 768, 801, 959
Hsp92II CATG 9 cut(s) 38, 85, 152, 248, 346, 379, 665, 690, 866
Ksp22I TGATCA 2 cut(s) 118, 217
Kzo9I GATC 5 cut(s) 118, 217, 516, 781, 936
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 2 cut(s) 513, 674
MaeI CTAG 1 cut(s) 876
MaeIII GTNAC 3 cut(s) 294, 360, 748
MalI GATC 5 cut(s) 120, 219, 518, 783, 938
MboI GATC 5 cut(s) 118, 217, 516, 781, 936
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 1 cut(s) 936
MhlI GDGCHC 1 cut(s) 717
MlyI GAGTC 2 cut(s) 161, 247
MmeI TCCRAC 1 cut(s) 759
MnlI CCTC 7 cut(s) 67, 147, 205, 322, 872, 954, 1017
Mph1103I ATGCAT 1 cut(s) 667
MseI TTAA 7 cut(s) 368, 465, 480, 561, 812, 897, 1057
MslI CAYNNNNRTG 3 cut(s) 153, 494, 899
MspI CCGG 1 cut(s) 619
MspR9I CCNGG 2 cut(s) 619, 642
MunI CAATTG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 642
NciI CCSGG 1 cut(s) 619
NcoI CCATGG 1 cut(s) 342
NdeII GATC 5 cut(s) 118, 217, 516, 781, 936
NlaIII CATG 9 cut(s) 38, 85, 152, 248, 346, 379, 665, 690, 866
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 294
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 2 cut(s) 85, 248
PciI ACATGT 1 cut(s) 244
PfeI GAWTC 2 cut(s) 347, 410
PkrI GCNGC 1 cut(s) 487
PleI GAGTC 2 cut(s) 161, 247
PpsI GAGTC 2 cut(s) 161, 247
PscI ACATGT 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 1 cut(s) 355
PsuI RGATCY 1 cut(s) 936
RsaI GTAC 3 cut(s) 243, 685, 874
RsaNI GTAC 3 cut(s) 242, 684, 873
RseI CAYNNNNRTG 3 cut(s) 153, 494, 899
SaqAI TTAA 7 cut(s) 368, 465, 480, 561, 812, 897, 1057
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 5 cut(s) 118, 217, 516, 781, 936
SchI GAGTC 2 cut(s) 161, 247
ScrFI CCNGG 2 cut(s) 619, 642
SduI GDGCHC 1 cut(s) 717
SetI ASST 7 cut(s) 306, 646, 685, 755, 917, 1004, 1028
SfaNI GCATC 2 cut(s) 513, 674
SmiMI CAYNNNNRTG 3 cut(s) 153, 494, 899
SspMI CTAG 1 cut(s) 876
StyD4I CCNGG 2 cut(s) 617, 640
StyI CCWWGG 3 cut(s) 342, 650, 1047
TaaI ACNGT 3 cut(s) 322, 428, 832
TaqI TCGA 2 cut(s) 139, 827
TatI WGTACW 2 cut(s) 241, 872
TfiI GAWTC 2 cut(s) 347, 410
Tru1I TTAA 7 cut(s) 368, 465, 480, 561, 812, 897, 1057
Tru9I TTAA 7 cut(s) 368, 465, 480, 561, 812, 897, 1057
TscAI CASTG 3 cut(s) 325, 438, 875
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 8 cut(s) 60, 192, 204, 348, 364, 462, 650, 690
TspRI CASTG 3 cut(s) 325, 438, 875
VneI GTGCAC 1 cut(s) 713
XapI RAATTY 4 cut(s) 370, 436, 657, 1042
XceI RCATGY 2 cut(s) 85, 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 648
XspI CTAG 1 cut(s) 876
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.