Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004520

Physical Location & Seq

Genomic Coordinates Forward (+)

28021005 .. 28022973

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0288400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTTCCACTTCGACTCTCCAATTCCACTCCCTTTCCTTCCAGACCTCAATTTGGGTCTCAAAGCATCAAACACCTGCATTGGTACTAAAGTTTAGACCCGAACTCGGGTCCAGTAACGGTCGGTTCATCTGGGCTCGACGGCTAAAACCCACTCACAGGTTCCTACTTAGAGCCATTGACGGCTCAGGTAGCTCTAATGGTGAAAACCCTAATGCCCATAATGATGAGAACTACAAGTATACCATAAACCTCAAAGACCCAGTTGACAAGTTCCACGGAATGATCAGCTCAGTCTCTCCCATTGTTTTCAAGATACGACAACGAGTGGGATCGAATTTGGCAATTGGTTTATGTATTGCAACTGCATTTTTGGTGGTTGCTCTGAGAGTATTCATGGTCAGGAAGTCGAAGAACAATCGTCAAGGCTCTGTAGCTGATCTTGTCAGACGTGGTCAGCTTAGGTCCGATAGAAGAGGCATTTCGAAGCCTCTCATGTACGATGACCCATTCAATAATCCATTGGTTAAAGTTGGTAAGGGAAATTCGACTATAGAGATGTGTGGAAAGGTTTATCGCCTTGCCCCAATTACTCTTACGAAAGAGGAACAAGCTATCCATCGAAAGAGGAGGTCGCGGGCATACCAGTGGAAGAGACCGACAATGTTCCTTAAAGAAGGGGATTCGATACCTGCTGATGTTGACCCGGATACAATTAGGTGGATTCCTTCCAATCATCCTTTTGCAACCACTGCCGGTGACATTGATGAAGACTTGGCACAGACCAATGTGTATCAGAAACATGGTGTACCGTATCGAATTCAGGCTGAGCATGAAGCACTGCAGAGAGAGCAAAAGGAGAGCAGGTTAGTGATGGACTCTAGCAATGCTACAGATCCTGTGAAAGCATTCAAGTCAGGTCCCAAGTCACCCGAGCATGGGGAAGAAAACCTCATCAGTAATGAAGGTGGTGACTCCAAGCCACCCTTAACAGAACGTGCCTCAAATTCCTCCGGTAGCATGTCATCCTCTGAGGAAAGGCATAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

350

Amino Acids

39.25

Weight (kDa)

9.81

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10043 FvH4_3g28221 FvH4_3g44891 FvH4_5g34872 FvH4_5g34873
prunus_persica	Prupe.4G046500_v2.0.a1
pyrus_communis	pycom16g17290
rosa_laevigata	RLG00000000609 RLG00000012674 RLG00000030721
rosa_multiflora	Rmu_sc0021420.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101980 Rroxscaffold_7G00183680
rosa_rugosa	Rorug02G0380600 Rorug02G0506500 Rorug07G0288400 Rorug07G0288500
rosa_samantha	Rh2AG419700 Rh2BG441300 Rh2CG406900 Rh2CG407000 Rh2DG451400 Rh5AG234600 Rh5AG414900 Rh7AG309500 Rh7BG415700 Rh7BG415800 Rh7BG415900 Rh7CG328700 Rh7CG513300
rosa_wichuraiana	Rw2G035330 Rw7G026260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	85
Acc36I	ACCTGC	3 cut(s)	85, 700, 855
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	1 cut(s)	637
AciI	CCGC	1 cut(s)	637
AclWI	GGATC	2 cut(s)	340, 890
AcsI	RAATTY	4 cut(s)	337, 544, 819, 1006
AfaI	GTAC	3 cut(s)	87, 500, 810
AfiI	CCNNNNNNNGG	6 cut(s)	54, 107, 108, 159, 938, 939
AgsI	TTSAA	3 cut(s)	313, 514, 913
AjiI	CACGTC	1 cut(s)	452
AloI	GAACNNNNNNTCC	2 cut(s)	600, 632
AluBI	AGCT	5 cut(s)	195, 291, 437, 460, 614
AluI	AGCT	5 cut(s)	195, 291, 437, 460, 614
Alw26I	GTCTC	3 cut(s)	64, 301, 649
AlwI	GGATC	2 cut(s)	340, 890
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	2 cut(s)	107, 932
ApoI	RAATTY	4 cut(s)	337, 544, 819, 1006
Asp700I	GAANNNNTTC	1 cut(s)	908
AspS9I	GGNCC	3 cut(s)	111, 465, 920
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	4 cut(s)	215, 770, 921, 983
AsuII	TTCGAA	1 cut(s)	485
AvaI	CYCGRG	2 cut(s)	107, 932
AvaII	GGWCC	3 cut(s)	111, 465, 920
BaeI	ACNNNNGTAYC	2 cut(s)	77, 110
BanII	GRGCYC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	777
BccI	CCATC	2 cut(s)	627, 868
BceAI	ACGGC	2 cut(s)	158, 199
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	3 cut(s)	64, 301, 649
BfaI	CTAG	1 cut(s)	882
BfmI	CTRYAG	4 cut(s)	432, 552, 842, 891
BfuAI	ACCTGC	3 cut(s)	85, 700, 855
BfuI	GTATCC	1 cut(s)	703
BlpI	GCTNAGC	1 cut(s)	828
Bme1390I	CCNGG	1 cut(s)	707
Bme18I	GGWCC	3 cut(s)	111, 465, 920
BmeT110I	CYCGRG	2 cut(s)	107, 932
BmgBI	CACGTC	1 cut(s)	452
BmgT120I	GGNCC	3 cut(s)	111, 465, 920
BmiI	GGNNCC	3 cut(s)	112, 164, 922
BmrFI	CCNGG	1 cut(s)	707
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	777
Bpu10I	CCTNAGC	2 cut(s)	187, 461
Bpu1102I	GCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	707
BsaI	GGTCTC	2 cut(s)	64, 649
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	1013
BsaXI	ACNNNNNCTCC	2 cut(s)	851, 881
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 107, 108, 159, 938, 939
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	3 cut(s)	114, 263, 646
Bse3DI	GCAATG	1 cut(s)	892
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	736, 1025
BseLI	CCNNNNNNNGG	6 cut(s)	54, 107, 108, 159, 938, 939
BseMI	GCAATG	1 cut(s)	892
BseMII	CTCAG	5 cut(s)	201, 306, 377, 819, 1023
BseNI	ACTGG	3 cut(s)	114, 263, 646
BseRI	GAGGAG	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	637
Bsh1285I	CGRYCG	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	124
BsiHKCI	CYCGRG	2 cut(s)	107, 932
BsiSI	CCGG	3 cut(s)	707, 756, 1014
BslFI	GGGAC	1 cut(s)	906
BslI	CCNNNNNNNGG	6 cut(s)	54, 107, 108, 159, 938, 939
BsmAI	GTCTC	3 cut(s)	64, 301, 649
BsmFI	GGGAC	1 cut(s)	906
BsmI	GAATGC	1 cut(s)	908
Bso31I	GGTCTC	2 cut(s)	64, 649
BsoBI	CYCGRG	2 cut(s)	107, 932
Bsp119I	TTCGAA	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	285, 332, 439, 895
Bsp1720I	GCTNAGC	1 cut(s)	828
BspACI	CCGC	1 cut(s)	637
BspCNI	CTCAG	5 cut(s)	200, 305, 378, 820, 1024
BspFNI	CGCG	1 cut(s)	637
BspLI	GGNNCC	3 cut(s)	112, 164, 922
BspMAI	CTGCAG	1 cut(s)	846
BspMI	ACCTGC	3 cut(s)	85, 700, 855
BspPI	GGATC	2 cut(s)	340, 890
BspT104I	TTCGAA	1 cut(s)	485
BspTNI	GGTCTC	2 cut(s)	64, 649
BsrDI	GCAATG	1 cut(s)	892
BsrFI	RCCGGY	1 cut(s)	755
BsrI	ACTGG	3 cut(s)	114, 263, 646
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	4 cut(s)	285, 332, 439, 895
BssNAI	GTATAC	1 cut(s)	243
Bst1107I	GTATAC	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	122, 813
Bst6I	CTCTTC	2 cut(s)	469, 647
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstBI	TTCGAA	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	7 cut(s)	170, 187, 292, 386, 461, 828, 1032
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	736, 1025
BstFNI	CGCG	1 cut(s)	637
BstKTI	GATC	4 cut(s)	288, 335, 442, 898
BstMAI	GTCTC	3 cut(s)	64, 301, 649
BstMBI	GATC	4 cut(s)	285, 332, 439, 895
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 752, 850
BstNSI	RCATGY	1 cut(s)	1024
BstSCI	CCNGG	1 cut(s)	705
BstSFI	CTRYAG	4 cut(s)	432, 552, 842, 891
BstUI	CGCG	1 cut(s)	637
BstV2I	GAAGAC	1 cut(s)	777
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
BstZ17I	GTATAC	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	703
BtgI	CCRYGG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	736, 1025
BtsI	GCAGTG	2 cut(s)	750, 839
BtsIMutI	CAGTG	3 cut(s)	653, 750, 839
BveI	ACCTGC	3 cut(s)	85, 700, 855
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	899
Cfr10I	RCCGGY	1 cut(s)	755
Cfr13I	GGNCC	3 cut(s)	111, 465, 920
Csp6I	GTAC	3 cut(s)	86, 499, 809
CviAII	CATG	6 cut(s)	397, 496, 803, 833, 938, 1021
CviQI	GTAC	3 cut(s)	86, 499, 809
DdeI	CTNAG	7 cut(s)	170, 187, 292, 386, 461, 828, 1032
DpnI	GATC	4 cut(s)	287, 334, 441, 897
DpnII	GATC	4 cut(s)	285, 332, 439, 895
Eam1104I	CTCTTC	2 cut(s)	469, 647
EarI	CTCTTC	2 cut(s)	469, 647
Eco24I	GRGCYC	1 cut(s)	139
Eco31I	GGTCTC	2 cut(s)	64, 649
Eco47I	GGWCC	3 cut(s)	111, 465, 920
Eco88I	CYCGRG	2 cut(s)	107, 932
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	819
EcoT38I	GRGCYC	1 cut(s)	139
FaeI	CATG	6 cut(s)	400, 499, 806, 836, 941, 1024
FalI	AAGNNNNNCTT	2 cut(s)	971, 1003
FaqI	GGGAC	1 cut(s)	906
FatI	CATG	6 cut(s)	396, 495, 802, 832, 937, 1020
FauI	CCCGC	1 cut(s)	630
FbaI	TGATCA	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	242
FokI	GGATG	2 cut(s)	723, 1012
FriOI	GRGCYC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	882
HapII	CCGG	3 cut(s)	707, 756, 1014
Hin1II	CATG	6 cut(s)	400, 499, 806, 836, 941, 1024
HincII	GTYRAC	2 cut(s)	268, 703
HindII	GTYRAC	2 cut(s)	268, 703
HinfI	GANTC	5 cut(s)	16, 683, 724, 878, 974
HpaII	CCGG	3 cut(s)	707, 756, 1014
HphI	GGTGA	4 cut(s)	215, 770, 921, 983
Hpy166II	GTNNAC	4 cut(s)	243, 268, 703, 809
Hpy188I	TCNGA	5 cut(s)	387, 449, 469, 798, 1033
Hpy188III	TCNNGA	3 cut(s)	43, 313, 403
Hpy8I	GTNNAC	4 cut(s)	243, 268, 703, 809
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	4 cut(s)	49, 671, 738, 959
HpyCH4III	ACNGT	2 cut(s)	122, 813
HpyCH4IV	ACGT	2 cut(s)	451, 997
HpyCH4V	TGCA	5 cut(s)	80, 362, 368, 746, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 752, 850
HpyF3I	CTNAG	7 cut(s)	170, 187, 292, 386, 461, 828, 1032
HpySE526I	ACGT	2 cut(s)	451, 997
Hsp92II	CATG	6 cut(s)	400, 499, 806, 836, 941, 1024
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	285, 332, 439, 895
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	882
MaeII	ACGT	2 cut(s)	451, 997
MaeIII	GTNAC	4 cut(s)	116, 758, 927, 971
MalI	GATC	4 cut(s)	287, 334, 441, 897
MboI	GATC	4 cut(s)	285, 332, 439, 895
MboII	GAAGA	5 cut(s)	424, 486, 664, 782, 956
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	9 cut(s)	23, 51, 337, 345, 544, 588, 714, 819, 1006
MlyI	GAGTC	3 cut(s)	10, 872, 968
MroXI	GAANNNNTTC	1 cut(s)	908
MseI	TTAA	3 cut(s)	528, 672, 989
MslI	CAYNNNNRTG	2 cut(s)	225, 646
MspI	CCGG	3 cut(s)	707, 756, 1014
MspR9I	CCNGG	1 cut(s)	707
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	908
MvnI	CGCG	1 cut(s)	637
MwoI	GCNNNNNNNGC	3 cut(s)	192, 752, 850
NciI	CCSGG	1 cut(s)	707
NdeII	GATC	4 cut(s)	285, 332, 439, 895
NlaIII	CATG	6 cut(s)	400, 499, 806, 836, 941, 1024
NlaIV	GGNNCC	3 cut(s)	112, 164, 922
NmuCI	GTSAC	3 cut(s)	758, 927, 971
NspI	RCATGY	1 cut(s)	1024
NspV	TTCGAA	1 cut(s)	485
PaqCI	CACCTGC	1 cut(s)	85
PctI	GAATGC	1 cut(s)	908
PdmI	GAANNNNTTC	1 cut(s)	908
PfeI	GAWTC	2 cut(s)	683, 724
PflFI	GACNNNGTC	1 cut(s)	453
PleI	GAGTC	3 cut(s)	10, 872, 968
PpsI	GAGTC	3 cut(s)	10, 872, 968
PpuMI	RGGWCCY	1 cut(s)	920
Psp5II	RGGWCCY	1 cut(s)	920
PspN4I	GGNNCC	3 cut(s)	112, 164, 922
PspPI	GGNCC	3 cut(s)	111, 465, 920
PspPPI	RGGWCCY	1 cut(s)	920
PstI	CTGCAG	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	895
PsyI	GACNNNGTC	1 cut(s)	453
RsaI	GTAC	3 cut(s)	87, 500, 810
RsaNI	GTAC	3 cut(s)	86, 499, 809
RseI	CAYNNNNRTG	2 cut(s)	225, 646
SaqAI	TTAA	3 cut(s)	528, 672, 989
Sau3AI	GATC	4 cut(s)	285, 332, 439, 895
Sau96I	GGNCC	3 cut(s)	111, 465, 920
SchI	GAGTC	3 cut(s)	10, 872, 968
ScrFI	CCNGG	1 cut(s)	707
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	4 cut(s)	432, 552, 842, 891
SfuI	TTCGAA	1 cut(s)	485
SinI	GGWCC	3 cut(s)	111, 465, 920
SmiMI	CAYNNNNRTG	2 cut(s)	225, 646
Sse9I	AATT	9 cut(s)	23, 51, 337, 345, 544, 588, 714, 819, 1006
SsiI	CCGC	1 cut(s)	637
SspMI	CTAG	1 cut(s)	882
StyD4I	CCNGG	1 cut(s)	705
TaaI	ACNGT	2 cut(s)	122, 813
TaiI	ACGT	2 cut(s)	454, 1000
TaqI	TCGA	9 cut(s)	14, 139, 335, 410, 485, 548, 622, 686, 817
TaqII	GACCGA	1 cut(s)	673
TasI	AATT	9 cut(s)	23, 51, 337, 345, 544, 588, 714, 819, 1006
TfiI	GAWTC	2 cut(s)	683, 724
Tru1I	TTAA	3 cut(s)	528, 672, 989
Tru9I	TTAA	3 cut(s)	528, 672, 989
TscAI	CASTG	3 cut(s)	653, 757, 846
TseFI	GTSAC	3 cut(s)	758, 927, 971
Tsp45I	GTSAC	3 cut(s)	758, 927, 971
TspDTI	ATGAA	5 cut(s)	118, 385, 783, 849, 978
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	3 cut(s)	653, 757, 846
Tth111I	GACNNNGTC	1 cut(s)	453
VpaK11BI	GGWCC	3 cut(s)	111, 465, 920
XapI	RAATTY	4 cut(s)	337, 544, 819, 1006
XceI	RCATGY	1 cut(s)	1024
XmiI	GTMKAC	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	908
XspI	CTAG	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.