No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g10043 FvH4_3g28221 FvH4_3g44891 FvH4_5g34872 FvH4_5g34873 |
| prunus_persica | Prupe.4G046500_v2.0.a1 |
| pyrus_communis | pycom16g17290 |
| rosa_laevigata | RLG00000000609 RLG00000012674 RLG00000030721 |
| rosa_multiflora | Rmu_sc0021420.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00101980 Rroxscaffold_7G00183680 |
| rosa_rugosa | Rorug02G0380600 Rorug02G0506500 Rorug07G0288400 Rorug07G0288500 |
| rosa_samantha | Rh2AG419700 Rh2BG441300 Rh2CG406900 Rh2CG407000 Rh2DG451400 Rh5AG234600 Rh5AG414900 Rh7AG309500 Rh7BG415700 Rh7BG415800 Rh7BG415900 Rh7CG328700 Rh7CG513300 |
| rosa_wichuraiana | Rw2G035330 Rw7G026260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 111 |
| AcsI | RAATTY | 2 cut(s) | 184, 276 |
| AcuI | CTGAAG | 1 cut(s) | 342 |
| AfaI | GTAC | 1 cut(s) | 418 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 371 |
| AgsI | TTSAA | 1 cut(s) | 221 |
| AjnI | CCWGG | 1 cut(s) | 451 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 346, 378 |
| AluBI | AGCT | 1 cut(s) | 362 |
| AluI | AGCT | 1 cut(s) | 362 |
| Alw26I | GTCTC | 1 cut(s) | 439 |
| AoxI | GGCC | 1 cut(s) | 140 |
| ApoI | RAATTY | 2 cut(s) | 184, 276 |
| AsuHPI | GGTGA | 3 cut(s) | 167, 179, 191 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 84, 116 |
| BbvCI | CCTCAGC | 1 cut(s) | 465 |
| BciT130I | CCWGG | 1 cut(s) | 453 |
| BcoDI | GTCTC | 1 cut(s) | 439 |
| BfaI | CTAG | 4 cut(s) | 201, 273, 324, 420 |
| BfmI | CTRYAG | 1 cut(s) | 90 |
| BmcAI | AGTACT | 1 cut(s) | 418 |
| Bme1390I | CCNGG | 1 cut(s) | 453 |
| BmrFI | CCNGG | 1 cut(s) | 453 |
| BmsI | GCATC | 1 cut(s) | 260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 465 |
| BsaI | GGTCTC | 1 cut(s) | 439 |
| BsaJI | CCNNGG | 2 cut(s) | 137, 281 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 61, 91, 346, 376 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 371 |
| BseBI | CCWGG | 1 cut(s) | 453 |
| BseDI | CCNNGG | 2 cut(s) | 137, 281 |
| BseGI | GGATG | 1 cut(s) | 377 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BseMII | CTCAG | 1 cut(s) | 479 |
| BseRI | GAGGAG | 1 cut(s) | 453 |
| BsgI | GTGCAG | 1 cut(s) | 417 |
| BshFI | GGCC | 1 cut(s) | 142 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BsmAI | GTCTC | 1 cut(s) | 439 |
| BsnI | GGCC | 1 cut(s) | 142 |
| Bso31I | GGTCTC | 1 cut(s) | 439 |
| BspANI | GGCC | 1 cut(s) | 142 |
| BspCNI | CTCAG | 1 cut(s) | 478 |
| BspTNI | GGTCTC | 1 cut(s) | 439 |
| BssECI | CCNNGG | 2 cut(s) | 137, 281 |
| BssT1I | CCWWGG | 2 cut(s) | 137, 281 |
| Bst2UI | CCWGG | 1 cut(s) | 453 |
| Bst6I | CTCTTC | 1 cut(s) | 301 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 2 cut(s) | 366, 465 |
| BstF5I | GGATG | 1 cut(s) | 377 |
| BstMAI | GTCTC | 1 cut(s) | 439 |
| BstNI | CCWGG | 1 cut(s) | 453 |
| BstNSI | RCATGY | 1 cut(s) | 337 |
| BstSCI | CCNGG | 1 cut(s) | 451 |
| BstSFI | CTRYAG | 1 cut(s) | 90 |
| BsuRI | GGCC | 1 cut(s) | 142 |
| BtsCI | GGATG | 1 cut(s) | 377 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| Csp6I | GTAC | 1 cut(s) | 417 |
| CviAII | CATG | 1 cut(s) | 334 |
| CviJI | RGCY | 3 cut(s) | 88, 142, 362 |
| CviKI_1 | RGCY | 3 cut(s) | 88, 142, 362 |
| CviQI | GTAC | 1 cut(s) | 417 |
| DdeI | CTNAG | 2 cut(s) | 366, 465 |
| Eam1104I | CTCTTC | 1 cut(s) | 301 |
| EarI | CTCTTC | 1 cut(s) | 301 |
| Eco130I | CCWWGG | 2 cut(s) | 137, 281 |
| Eco31I | GGTCTC | 1 cut(s) | 439 |
| Eco57I | CTGAAG | 1 cut(s) | 342 |
| EcoRI | GAATTC | 1 cut(s) | 276 |
| EcoRII | CCWGG | 1 cut(s) | 451 |
| EcoT14I | CCWWGG | 2 cut(s) | 137, 281 |
| ErhI | CCWWGG | 2 cut(s) | 137, 281 |
| FaeI | CATG | 1 cut(s) | 337 |
| FaiI | YATR | 7 cut(s) | 37, 39, 51, 129, 335, 440, 442 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 115, 147 |
| FatI | CATG | 1 cut(s) | 333 |
| FauNDI | CATATG | 1 cut(s) | 440 |
| FblI | GTMKAC | 1 cut(s) | 111 |
| FokI | GGATG | 1 cut(s) | 364 |
| FspBI | CTAG | 4 cut(s) | 201, 273, 324, 420 |
| HaeIII | GGCC | 1 cut(s) | 142 |
| Hin1II | CATG | 1 cut(s) | 337 |
| HinfI | GANTC | 1 cut(s) | 460 |
| HphI | GGTGA | 3 cut(s) | 167, 179, 191 |
| Hpy166II | GTNNAC | 3 cut(s) | 112, 170, 331 |
| Hpy188III | TCNNGA | 3 cut(s) | 201, 255, 324 |
| Hpy8I | GTNNAC | 3 cut(s) | 112, 170, 331 |
| HpyAV | CCTTC | 2 cut(s) | 110, 340 |
| HpyCH4IV | ACGT | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 434 |
| HpyF3I | CTNAG | 2 cut(s) | 366, 465 |
| HpySE526I | ACGT | 1 cut(s) | 114 |
| Hsp92II | CATG | 1 cut(s) | 337 |
| LmnI | GCTCC | 1 cut(s) | 367 |
| LpnPI | CCDG | 4 cut(s) | 102, 156, 438, 465 |
| LweI | GCATC | 1 cut(s) | 260 |
| MaeI | CTAG | 4 cut(s) | 201, 273, 324, 420 |
| MaeII | ACGT | 1 cut(s) | 114 |
| MboII | GAAGA | 2 cut(s) | 288, 396 |
| MluCI | AATT | 2 cut(s) | 184, 276 |
| MlyI | GAGTC | 1 cut(s) | 454 |
| MmeI | TCCRAC | 1 cut(s) | 331 |
| MnlI | CCTC | 3 cut(s) | 158, 251, 474 |
| MslI | CAYNNNNRTG | 1 cut(s) | 439 |
| MspR9I | CCNGG | 1 cut(s) | 453 |
| MvaI | CCWGG | 1 cut(s) | 453 |
| NdeI | CATATG | 1 cut(s) | 440 |
| NlaIII | CATG | 1 cut(s) | 337 |
| NspI | RCATGY | 1 cut(s) | 337 |
| PleI | GAGTC | 1 cut(s) | 454 |
| PpsI | GAGTC | 1 cut(s) | 454 |
| Psp6I | CCWGG | 1 cut(s) | 451 |
| PspGI | CCWGG | 1 cut(s) | 451 |
| RsaI | GTAC | 1 cut(s) | 418 |
| RsaNI | GTAC | 1 cut(s) | 417 |
| RseI | CAYNNNNRTG | 1 cut(s) | 439 |
| ScaI | AGTACT | 1 cut(s) | 418 |
| SchI | GAGTC | 1 cut(s) | 454 |
| ScrFI | CCNGG | 1 cut(s) | 453 |
| SfaNI | GCATC | 1 cut(s) | 260 |
| SfcI | CTRYAG | 1 cut(s) | 90 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 439 |
| Sse9I | AATT | 2 cut(s) | 184, 276 |
| SspMI | CTAG | 4 cut(s) | 201, 273, 324, 420 |
| StyD4I | CCNGG | 1 cut(s) | 451 |
| StyI | CCWWGG | 2 cut(s) | 137, 281 |
| TaiI | ACGT | 1 cut(s) | 117 |
| TasI | AATT | 2 cut(s) | 184, 276 |
| TatI | WGTACW | 1 cut(s) | 416 |
| XapI | RAATTY | 2 cut(s) | 184, 276 |
| XbaI | TCTAGA | 2 cut(s) | 200, 323 |
| XceI | RCATGY | 1 cut(s) | 337 |
| XmiI | GTMKAC | 1 cut(s) | 111 |
| XspI | CTAG | 4 cut(s) | 201, 273, 324, 420 |
| ZrmI | AGTACT | 1 cut(s) | 418 |